Wall clock time and date at job start Mon Mar 30 2020 02:45:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 O 1.21277 * 120.00393 * 2 1
4 4 N 1.34778 * 119.99392 * 179.97438 * 2 1 3
5 5 C 1.47077 * 120.88310 * 5.35518 * 4 2 1
6 6 C 1.53240 * 108.52087 * 231.15972 * 5 4 2
7 7 N 1.46901 * 109.34026 * 306.17355 * 6 5 4
8 8 C 1.46895 * 110.99923 * 187.25567 * 7 6 5
9 9 C 1.46898 * 111.27084 * 63.09989 * 7 6 5
10 10 C 1.47086 * 120.87722 * 185.32947 * 4 2 1
11 11 H 1.09000 * 109.78381 * 248.64520 * 10 4 2
12 12 C 1.50692 * 109.62906 * 9.12961 * 10 4 2
13 13 H 1.07999 * 120.00119 * 64.01591 * 12 10 4
14 14 C 1.37880 * 120.00175 * 244.01329 * 12 10 4
15 15 N 1.31512 * 119.99750 * 354.71643 * 14 12 10
16 16 Si 1.86801 * 120.00045 * 174.99018 * 14 12 10
17 17 H 1.48498 * 109.47244 * 90.00567 * 16 14 12
18 18 H 1.48510 * 109.46803 * 210.00284 * 16 14 12
19 19 H 1.48498 * 109.47128 * 330.00001 * 16 14 12
20 20 H 1.08998 * 109.47421 * 270.00407 * 1 2 3
21 21 H 1.09001 * 109.46594 * 30.00107 * 1 2 3
22 22 H 1.09000 * 109.47380 * 149.99702 * 1 2 3
23 23 H 1.08998 * 109.62745 * 111.45014 * 5 4 2
24 24 H 1.08998 * 109.78998 * 350.96680 * 5 4 2
25 25 H 1.08997 * 109.49582 * 186.21340 * 6 5 4
26 26 H 1.09005 * 109.49210 * 66.12781 * 6 5 4
27 27 H 1.09000 * 109.47260 * 295.68926 * 8 7 6
28 28 H 1.09001 * 109.47661 * 55.69542 * 8 7 6
29 29 H 1.09003 * 109.47033 * 175.69664 * 8 7 6
30 30 H 1.09003 * 109.49017 * 176.93914 * 9 7 6
31 31 H 1.08998 * 109.51218 * 56.87193 * 9 7 6
32 32 H 0.97004 * 120.00232 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.1135 1.0502 0.0000
4 7 2.1808 -1.1673 0.0005
5 6 1.4698 -2.4494 -0.1167
6 6 1.9373 -3.3705 1.0152
7 7 3.4028 -3.4683 0.9890
8 6 3.8805 -4.4745 1.9468
9 6 4.0285 -2.1632 1.2404
10 6 3.6468 -1.1926 0.1178
11 1 4.0863 -1.5281 -0.8216
12 6 4.1521 0.1880 0.4486
13 1 3.8800 0.6527 1.3847
14 6 4.9619 0.8579 -0.4439
15 7 5.3782 0.2539 -1.5354
16 14 5.4739 2.6210 -0.0989
17 1 6.7423 2.6260 0.6732
18 1 5.6735 3.3388 -1.3836
19 1 4.4128 3.2996 0.6876
20 1 -0.3634 0.0001 1.0276
21 1 -0.3632 0.8900 -0.5139
22 1 -0.3634 -0.8899 -0.5139
23 1 1.6973 -2.9076 -1.0792
24 1 0.3955 -2.2845 -0.0345
25 1 1.5042 -4.3616 0.8800
26 1 1.6172 -2.9608 1.9732
27 1 3.6333 -4.1578 2.9600
28 1 3.4015 -5.4311 1.7380
29 1 4.9612 -4.5811 1.8530
30 1 5.1120 -2.2787 1.2685
31 1 3.6797 -1.7701 2.1954
32 1 5.9476 0.7252 -2.1635
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260103313.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:44
Heat of formation + Delta-G solvation = -9.329290 kcal
Electronic energy + Delta-G solvation = -15076.977163 eV
Core-core repulsion = 12652.426594 eV
Total energy + Delta-G solvation = -2424.550569 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.07417 -36.91927 -33.62198 -32.90848 -30.28270 -29.08120 -27.29797 -25.18742
-23.50419 -21.87342 -20.34872 -17.95020 -16.67957 -15.53252 -15.01826 -14.64524
-14.33758 -14.12971 -13.96782 -13.86264 -12.91494 -12.50506 -12.28377 -11.79059
-11.63357 -11.35176 -11.24811 -10.97639 -10.75966 -10.74248 -10.40515 -10.27236
-9.65481 -9.14277 -8.86683 -7.96026 -7.83666 -7.17495 -5.89501 -3.73529
3.43609 3.51169 3.64341 3.88352 4.18251 4.49663 4.68562 5.38913
5.43782 5.51817 5.62168 5.69429 5.71124 5.81845 5.88611 5.91081
5.98262 6.13209 6.31897 6.35888 6.47231 6.48369 6.90787 7.43385
7.60056 7.78292 7.92139 8.06403 8.21783 8.87029 9.15421 9.61695
9.75122 11.19715
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.029660 B = 0.013325 C = 0.010128
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 943.806368 B = 2100.868103 C = 2763.873082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.499 3.501
3 O -0.501 6.501
4 N -0.614 5.614
5 C 0.106 3.894
6 C 0.047 3.953
7 N -0.547 5.547
8 C 0.028 3.972
9 C 0.057 3.943
10 C 0.254 3.746
11 H 0.080 0.920
12 C -0.459 4.459
13 H 0.052 0.948
14 C 0.072 3.928
15 N -0.899 5.899
16 Si 0.900 3.100
17 H -0.287 1.287
18 H -0.290 1.290
19 H -0.271 1.271
20 H 0.075 0.925
21 H 0.078 0.922
22 H 0.069 0.931
23 H 0.063 0.937
24 H 0.075 0.925
25 H 0.071 0.929
26 H 0.028 0.972
27 H 0.016 0.984
28 H 0.058 0.942
29 H 0.065 0.935
30 H 0.075 0.925
31 H 0.019 0.981
32 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.595 -7.652 4.134 11.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C 0.285 3.715
3 O -0.374 6.374
4 N -0.350 5.350
5 C -0.019 4.019
6 C -0.083 4.083
7 N -0.271 5.271
8 C -0.121 4.121
9 C -0.071 4.071
10 C 0.155 3.845
11 H 0.098 0.902
12 C -0.498 4.498
13 H 0.071 0.929
14 C -0.129 4.129
15 N -0.539 5.539
16 Si 0.729 3.271
17 H -0.213 1.213
18 H -0.216 1.216
19 H -0.196 1.196
20 H 0.094 0.906
21 H 0.097 0.903
22 H 0.088 0.912
23 H 0.082 0.918
24 H 0.093 0.907
25 H 0.090 0.910
26 H 0.046 0.954
27 H 0.035 0.965
28 H 0.077 0.923
29 H 0.084 0.916
30 H 0.094 0.906
31 H 0.038 0.962
32 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -7.002 -7.180 3.517 10.628
hybrid contribution -0.161 0.991 0.970 1.396
sum -7.163 -6.188 4.487 10.476
Atomic orbital electron populations
1.22149 0.96020 1.03175 1.02948 1.20383 0.88560 0.84425 0.78176
1.90807 1.68825 1.31043 1.46712 1.49152 1.09555 1.03617 1.72656
1.21704 0.96030 0.85984 0.98164 1.22395 0.89089 0.99049 0.97737
1.62085 1.05631 1.09225 1.50207 1.22316 1.00992 0.95451 0.93339
1.22816 0.98775 0.86684 0.98802 1.19334 0.75082 0.94559 0.95567
0.90239 1.20693 1.26751 0.98658 1.03684 0.92929 1.24761 0.95759
0.97845 0.94565 1.69884 1.35435 1.36912 1.11639 0.86451 0.77859
0.85383 0.77434 1.21326 1.21557 1.19566 0.90598 0.90340 0.91225
0.91827 0.90730 0.91021 0.95381 0.96522 0.92282 0.91615 0.90646
0.96233 0.93031
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.94 9.60 36.01 0.35 -2.59 16
2 C 0.50 11.37 7.67 -10.98 -0.08 11.29 16
3 O -0.50 -13.93 13.80 5.56 0.08 -13.85 16
4 N -0.61 -13.66 3.01 -166.24 -0.50 -14.16 16
5 C 0.11 1.79 6.42 -3.60 -0.02 1.76 16
6 C 0.05 0.74 5.62 -3.70 -0.02 0.72 16
7 N -0.55 -10.00 4.88 -242.61 -1.18 -11.18 16
8 C 0.03 0.40 9.58 60.06 0.58 0.98 16
9 C 0.06 1.25 4.90 -3.70 -0.02 1.23 16
10 C 0.25 6.48 3.36 -68.65 -0.23 6.25 16
11 H 0.08 2.30 6.93 -51.93 -0.36 1.94 16
12 C -0.46 -13.20 5.17 -34.44 -0.18 -13.38 16
13 H 0.05 1.58 7.50 -52.49 -0.39 1.18 16
14 C 0.07 2.14 5.25 -17.82 -0.09 2.04 16
15 N -0.90 -27.22 12.62 55.43 0.70 -26.52 16
16 Si 0.90 23.60 29.54 -169.99 -5.02 18.58 16
17 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
18 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16
19 H -0.27 -7.28 7.11 56.52 0.40 -6.88 16
20 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16
21 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
22 H 0.07 0.93 6.02 -51.93 -0.31 0.62 16
23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
24 H 0.07 1.01 5.49 -51.93 -0.28 0.73 16
25 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16
26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16
27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16
28 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16
29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
30 H 0.08 1.68 8.11 -51.93 -0.42 1.26 16
31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
LS Contribution 258.25 15.07 3.89 3.89
Total: -1.00 -33.07 258.25 -6.47 -39.54
By element:
Atomic # 1 Polarization: 0.10 SS G_CDS: -4.70 Total: -4.60 kcal
Atomic # 6 Polarization: 8.03 SS G_CDS: 0.27 Total: 8.31 kcal
Atomic # 7 Polarization: -50.88 SS G_CDS: -0.99 Total: -51.87 kcal
Atomic # 8 Polarization: -13.93 SS G_CDS: 0.08 Total: -13.85 kcal
Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal
Total LS contribution 3.89 Total: 3.89 kcal
Total: -33.07 -6.47 -39.54 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260103313.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.211 kcal
(2) G-P(sol) polarization free energy of solvation -33.071 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.859 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.329 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds