Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21277 * 120.00393 * 2 1 4 4 N 1.34778 * 119.99392 * 179.97438 * 2 1 3 5 5 C 1.47077 * 120.88310 * 5.35518 * 4 2 1 6 6 C 1.53240 * 108.52087 * 231.15972 * 5 4 2 7 7 N 1.46901 * 109.34026 * 306.17355 * 6 5 4 8 8 C 1.46895 * 110.99923 * 187.25567 * 7 6 5 9 9 C 1.46898 * 111.27084 * 63.09989 * 7 6 5 10 10 C 1.47086 * 120.87722 * 185.32947 * 4 2 1 11 11 H 1.09000 * 109.78381 * 248.64520 * 10 4 2 12 12 C 1.50692 * 109.62906 * 9.12961 * 10 4 2 13 13 H 1.07999 * 120.00119 * 64.01591 * 12 10 4 14 14 C 1.37880 * 120.00175 * 244.01329 * 12 10 4 15 15 N 1.31512 * 119.99750 * 354.71643 * 14 12 10 16 16 Si 1.86801 * 120.00045 * 174.99018 * 14 12 10 17 17 H 1.48498 * 109.47244 * 90.00567 * 16 14 12 18 18 H 1.48510 * 109.46803 * 210.00284 * 16 14 12 19 19 H 1.48498 * 109.47128 * 330.00001 * 16 14 12 20 20 H 1.08998 * 109.47421 * 270.00407 * 1 2 3 21 21 H 1.09001 * 109.46594 * 30.00107 * 1 2 3 22 22 H 1.09000 * 109.47380 * 149.99702 * 1 2 3 23 23 H 1.08998 * 109.62745 * 111.45014 * 5 4 2 24 24 H 1.08998 * 109.78998 * 350.96680 * 5 4 2 25 25 H 1.08997 * 109.49582 * 186.21340 * 6 5 4 26 26 H 1.09005 * 109.49210 * 66.12781 * 6 5 4 27 27 H 1.09000 * 109.47260 * 295.68926 * 8 7 6 28 28 H 1.09001 * 109.47661 * 55.69542 * 8 7 6 29 29 H 1.09003 * 109.47033 * 175.69664 * 8 7 6 30 30 H 1.09003 * 109.49017 * 176.93914 * 9 7 6 31 31 H 1.08998 * 109.51218 * 56.87193 * 9 7 6 32 32 H 0.97004 * 120.00232 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4698 -2.4494 -0.1167 6 6 1.9373 -3.3705 1.0152 7 7 3.4028 -3.4683 0.9890 8 6 3.8805 -4.4745 1.9468 9 6 4.0285 -2.1632 1.2404 10 6 3.6468 -1.1926 0.1178 11 1 4.0863 -1.5281 -0.8216 12 6 4.1521 0.1880 0.4486 13 1 3.8800 0.6527 1.3847 14 6 4.9619 0.8579 -0.4439 15 7 5.3782 0.2539 -1.5354 16 14 5.4739 2.6210 -0.0989 17 1 6.7423 2.6260 0.6732 18 1 5.6735 3.3388 -1.3836 19 1 4.4128 3.2996 0.6876 20 1 -0.3634 0.0001 1.0276 21 1 -0.3632 0.8900 -0.5139 22 1 -0.3634 -0.8899 -0.5139 23 1 1.6973 -2.9076 -1.0792 24 1 0.3955 -2.2845 -0.0345 25 1 1.5042 -4.3616 0.8800 26 1 1.6172 -2.9608 1.9732 27 1 3.6333 -4.1578 2.9600 28 1 3.4015 -5.4311 1.7380 29 1 4.9612 -4.5811 1.8530 30 1 5.1120 -2.2787 1.2685 31 1 3.6797 -1.7701 2.1954 32 1 5.9476 0.7252 -2.1635 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = -34.804870 kcal Electronic energy + Delta-G solvation = -15078.081867 eV Core-core repulsion = 12652.426594 eV Total energy + Delta-G solvation = -2425.655273 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.77413 -38.55040 -35.37373 -34.88192 -32.12480 -30.49682 -28.75287 -27.16727 -24.93442 -23.63980 -21.95092 -19.65468 -18.71647 -17.28631 -16.80947 -16.30984 -15.96483 -15.75419 -15.52603 -15.44341 -14.36070 -14.24685 -14.12704 -13.18107 -12.98283 -12.94393 -12.83640 -12.79982 -12.55930 -12.41505 -12.28417 -11.91213 -11.63462 -11.18343 -10.91534 -9.96485 -9.36319 -8.93881 -8.11303 -5.97399 1.32101 1.36855 1.51348 2.16297 2.44432 2.55546 3.15172 3.37892 4.01386 4.18537 4.24362 4.37876 4.47199 4.47911 4.62999 4.65102 4.75458 4.78181 4.84454 5.03061 5.06258 5.13529 5.17203 5.51617 5.73151 5.95334 6.12498 6.21571 6.34727 6.84513 7.16238 7.51162 7.87497 8.98149 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029660 B = 0.013325 C = 0.010128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.806368 B = 2100.868103 C = 2763.873082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.479 3.521 3 O -0.566 6.566 4 N -0.621 5.621 5 C 0.100 3.900 6 C 0.047 3.953 7 N -0.561 5.561 8 C 0.029 3.971 9 C 0.075 3.925 10 C 0.253 3.747 11 H 0.039 0.961 12 C -0.456 4.456 13 H 0.030 0.970 14 C 0.021 3.979 15 N -0.933 5.933 16 Si 0.948 3.052 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.285 1.285 20 H 0.102 0.898 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.062 0.938 24 H 0.119 0.881 25 H 0.115 0.885 26 H 0.030 0.970 27 H 0.022 0.978 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.011 0.989 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.765 -9.406 4.931 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.268 3.732 3 O -0.444 6.444 4 N -0.355 5.355 5 C -0.022 4.022 6 C -0.082 4.082 7 N -0.286 5.286 8 C -0.119 4.119 9 C -0.054 4.054 10 C 0.152 3.848 11 H 0.057 0.943 12 C -0.496 4.496 13 H 0.049 0.951 14 C -0.176 4.176 15 N -0.576 5.576 16 Si 0.775 3.225 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.211 1.211 20 H 0.120 0.880 21 H 0.102 0.898 22 H 0.123 0.877 23 H 0.080 0.920 24 H 0.137 0.863 25 H 0.133 0.867 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.203 -8.984 4.330 13.570 hybrid contribution 0.403 1.423 0.747 1.657 sum -8.800 -7.561 5.077 12.664 Atomic orbital electron populations 1.22004 0.89791 1.05226 1.05238 1.21601 0.91534 0.83508 0.76564 1.90764 1.70955 1.33051 1.49670 1.49004 1.08552 1.06031 1.71961 1.22078 0.98006 0.83386 0.98779 1.22530 0.87385 1.01048 0.97208 1.61997 1.07343 1.07513 1.51754 1.22388 1.01220 0.95530 0.92774 1.22329 0.98175 0.88285 0.96597 1.18985 0.77283 0.93677 0.94864 0.94289 1.20792 1.26125 1.00029 1.02609 0.95134 1.25354 0.96607 1.00842 0.94823 1.69983 1.37062 1.37912 1.12620 0.85701 0.77676 0.81831 0.77256 1.19452 1.21213 1.21062 0.87983 0.89830 0.87672 0.91976 0.86326 0.86740 0.95138 0.95893 0.89094 0.91916 0.92181 0.97066 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 9.60 71.24 0.68 -3.97 16 2 C 0.48 21.48 7.67 87.66 0.67 22.16 16 3 O -0.57 -32.26 13.80 -3.02 -0.04 -32.30 16 4 N -0.62 -27.12 3.01 -798.26 -2.40 -29.53 16 5 C 0.10 3.04 6.42 86.35 0.55 3.59 16 6 C 0.05 1.29 5.62 86.38 0.49 1.77 16 7 N -0.56 -19.32 4.88 -921.49 -4.50 -23.82 16 8 C 0.03 0.75 9.58 127.69 1.22 1.98 16 9 C 0.08 3.31 4.90 86.38 0.42 3.73 16 10 C 0.25 13.26 3.36 44.21 0.15 13.41 16 11 H 0.04 2.36 6.93 -2.39 -0.02 2.34 16 12 C -0.46 -27.29 5.17 25.60 0.13 -27.15 16 13 H 0.03 1.91 7.50 -2.91 -0.02 1.89 16 14 C 0.02 1.29 5.25 84.66 0.44 1.73 16 15 N -0.93 -58.81 12.62 21.45 0.27 -58.54 16 16 Si 0.95 50.11 29.54 68.60 2.03 52.14 16 17 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 18 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16 19 H -0.28 -15.54 7.11 99.48 0.71 -14.84 16 20 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 22 H 0.10 2.23 6.02 -2.39 -0.01 2.22 16 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.12 2.54 5.49 -2.39 -0.01 2.53 16 25 H 0.11 2.27 8.06 -2.39 -0.02 2.25 16 26 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 2.76 8.11 -2.39 -0.02 2.74 16 31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -76.75 258.25 1.21 -75.53 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: 1.09 Total: -0.74 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 4.77 Total: 17.26 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -6.63 Total: -111.89 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.04 Total: -32.30 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.03 Total: 52.14 kcal Total: -76.75 1.21 -75.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.730 kcal (2) G-P(sol) polarization free energy of solvation -76.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds