Wall clock time and date at job start Mon Mar 30 2020 02:45:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 O 1.21277 * 120.00393 * 2 1
4 4 N 1.34778 * 119.99392 * 179.97438 * 2 1 3
5 5 C 1.47077 * 120.88310 * 5.35518 * 4 2 1
6 6 C 1.53240 * 108.52087 * 231.15972 * 5 4 2
7 7 N 1.46901 * 109.34026 * 306.17355 * 6 5 4
8 8 C 1.46895 * 110.99923 * 187.25567 * 7 6 5
9 9 C 1.46898 * 111.27084 * 63.09989 * 7 6 5
10 10 C 1.47086 * 120.87722 * 185.32947 * 4 2 1
11 11 H 1.09000 * 109.78381 * 248.64520 * 10 4 2
12 12 C 1.50692 * 109.62906 * 9.12961 * 10 4 2
13 13 H 1.07999 * 120.00119 * 64.01591 * 12 10 4
14 14 C 1.37880 * 120.00175 * 244.01329 * 12 10 4
15 15 N 1.31512 * 119.99750 * 354.71643 * 14 12 10
16 16 Si 1.86801 * 120.00045 * 174.99018 * 14 12 10
17 17 H 1.48498 * 109.47244 * 90.00567 * 16 14 12
18 18 H 1.48510 * 109.46803 * 210.00284 * 16 14 12
19 19 H 1.48498 * 109.47128 * 330.00001 * 16 14 12
20 20 H 1.08998 * 109.47421 * 270.00407 * 1 2 3
21 21 H 1.09001 * 109.46594 * 30.00107 * 1 2 3
22 22 H 1.09000 * 109.47380 * 149.99702 * 1 2 3
23 23 H 1.08998 * 109.62745 * 111.45014 * 5 4 2
24 24 H 1.08998 * 109.78998 * 350.96680 * 5 4 2
25 25 H 1.08997 * 109.49582 * 186.21340 * 6 5 4
26 26 H 1.09005 * 109.49210 * 66.12781 * 6 5 4
27 27 H 1.09000 * 109.47260 * 295.68926 * 8 7 6
28 28 H 1.09001 * 109.47661 * 55.69542 * 8 7 6
29 29 H 1.09003 * 109.47033 * 175.69664 * 8 7 6
30 30 H 1.09003 * 109.49017 * 176.93914 * 9 7 6
31 31 H 1.08998 * 109.51218 * 56.87193 * 9 7 6
32 32 H 0.97004 * 120.00232 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 8 2.1135 1.0502 0.0000
4 7 2.1808 -1.1673 0.0005
5 6 1.4698 -2.4494 -0.1167
6 6 1.9373 -3.3705 1.0152
7 7 3.4028 -3.4683 0.9890
8 6 3.8805 -4.4745 1.9468
9 6 4.0285 -2.1632 1.2404
10 6 3.6468 -1.1926 0.1178
11 1 4.0863 -1.5281 -0.8216
12 6 4.1521 0.1880 0.4486
13 1 3.8800 0.6527 1.3847
14 6 4.9619 0.8579 -0.4439
15 7 5.3782 0.2539 -1.5354
16 14 5.4739 2.6210 -0.0989
17 1 6.7423 2.6260 0.6732
18 1 5.6735 3.3388 -1.3836
19 1 4.4128 3.2996 0.6876
20 1 -0.3634 0.0001 1.0276
21 1 -0.3632 0.8900 -0.5139
22 1 -0.3634 -0.8899 -0.5139
23 1 1.6973 -2.9076 -1.0792
24 1 0.3955 -2.2845 -0.0345
25 1 1.5042 -4.3616 0.8800
26 1 1.6172 -2.9608 1.9732
27 1 3.6333 -4.1578 2.9600
28 1 3.4015 -5.4311 1.7380
29 1 4.9612 -4.5811 1.8530
30 1 5.1120 -2.2787 1.2685
31 1 3.6797 -1.7701 2.1954
32 1 5.9476 0.7252 -2.1635
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260103313.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:45:44
Heat of formation + Delta-G solvation = -34.804870 kcal
Electronic energy + Delta-G solvation = -15078.081867 eV
Core-core repulsion = 12652.426594 eV
Total energy + Delta-G solvation = -2425.655273 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.77413 -38.55040 -35.37373 -34.88192 -32.12480 -30.49682 -28.75287 -27.16727
-24.93442 -23.63980 -21.95092 -19.65468 -18.71647 -17.28631 -16.80947 -16.30984
-15.96483 -15.75419 -15.52603 -15.44341 -14.36070 -14.24685 -14.12704 -13.18107
-12.98283 -12.94393 -12.83640 -12.79982 -12.55930 -12.41505 -12.28417 -11.91213
-11.63462 -11.18343 -10.91534 -9.96485 -9.36319 -8.93881 -8.11303 -5.97399
1.32101 1.36855 1.51348 2.16297 2.44432 2.55546 3.15172 3.37892
4.01386 4.18537 4.24362 4.37876 4.47199 4.47911 4.62999 4.65102
4.75458 4.78181 4.84454 5.03061 5.06258 5.13529 5.17203 5.51617
5.73151 5.95334 6.12498 6.21571 6.34727 6.84513 7.16238 7.51162
7.87497 8.98149
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.029660 B = 0.013325 C = 0.010128
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 943.806368 B = 2100.868103 C = 2763.873082
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.479 3.521
3 O -0.566 6.566
4 N -0.621 5.621
5 C 0.100 3.900
6 C 0.047 3.953
7 N -0.561 5.561
8 C 0.029 3.971
9 C 0.075 3.925
10 C 0.253 3.747
11 H 0.039 0.961
12 C -0.456 4.456
13 H 0.030 0.970
14 C 0.021 3.979
15 N -0.933 5.933
16 Si 0.948 3.052
17 H -0.269 1.269
18 H -0.286 1.286
19 H -0.285 1.285
20 H 0.102 0.898
21 H 0.083 0.917
22 H 0.105 0.895
23 H 0.062 0.938
24 H 0.119 0.881
25 H 0.115 0.885
26 H 0.030 0.970
27 H 0.022 0.978
28 H 0.090 0.910
29 H 0.062 0.938
30 H 0.060 0.940
31 H 0.011 0.989
32 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.765 -9.406 4.931 14.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.268 3.732
3 O -0.444 6.444
4 N -0.355 5.355
5 C -0.022 4.022
6 C -0.082 4.082
7 N -0.286 5.286
8 C -0.119 4.119
9 C -0.054 4.054
10 C 0.152 3.848
11 H 0.057 0.943
12 C -0.496 4.496
13 H 0.049 0.951
14 C -0.176 4.176
15 N -0.576 5.576
16 Si 0.775 3.225
17 H -0.195 1.195
18 H -0.212 1.212
19 H -0.211 1.211
20 H 0.120 0.880
21 H 0.102 0.898
22 H 0.123 0.877
23 H 0.080 0.920
24 H 0.137 0.863
25 H 0.133 0.867
26 H 0.049 0.951
27 H 0.041 0.959
28 H 0.109 0.891
29 H 0.081 0.919
30 H 0.078 0.922
31 H 0.029 0.971
32 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -9.203 -8.984 4.330 13.570
hybrid contribution 0.403 1.423 0.747 1.657
sum -8.800 -7.561 5.077 12.664
Atomic orbital electron populations
1.22004 0.89791 1.05226 1.05238 1.21601 0.91534 0.83508 0.76564
1.90764 1.70955 1.33051 1.49670 1.49004 1.08552 1.06031 1.71961
1.22078 0.98006 0.83386 0.98779 1.22530 0.87385 1.01048 0.97208
1.61997 1.07343 1.07513 1.51754 1.22388 1.01220 0.95530 0.92774
1.22329 0.98175 0.88285 0.96597 1.18985 0.77283 0.93677 0.94864
0.94289 1.20792 1.26125 1.00029 1.02609 0.95134 1.25354 0.96607
1.00842 0.94823 1.69983 1.37062 1.37912 1.12620 0.85701 0.77676
0.81831 0.77256 1.19452 1.21213 1.21062 0.87983 0.89830 0.87672
0.91976 0.86326 0.86740 0.95138 0.95893 0.89094 0.91916 0.92181
0.97066 0.93225
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.65 9.60 71.24 0.68 -3.97 16
2 C 0.48 21.48 7.67 87.66 0.67 22.16 16
3 O -0.57 -32.26 13.80 -3.02 -0.04 -32.30 16
4 N -0.62 -27.12 3.01 -798.26 -2.40 -29.53 16
5 C 0.10 3.04 6.42 86.35 0.55 3.59 16
6 C 0.05 1.29 5.62 86.38 0.49 1.77 16
7 N -0.56 -19.32 4.88 -921.49 -4.50 -23.82 16
8 C 0.03 0.75 9.58 127.69 1.22 1.98 16
9 C 0.08 3.31 4.90 86.38 0.42 3.73 16
10 C 0.25 13.26 3.36 44.21 0.15 13.41 16
11 H 0.04 2.36 6.93 -2.39 -0.02 2.34 16
12 C -0.46 -27.29 5.17 25.60 0.13 -27.15 16
13 H 0.03 1.91 7.50 -2.91 -0.02 1.89 16
14 C 0.02 1.29 5.25 84.66 0.44 1.73 16
15 N -0.93 -58.81 12.62 21.45 0.27 -58.54 16
16 Si 0.95 50.11 29.54 68.60 2.03 52.14 16
17 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16
18 H -0.29 -14.81 7.11 99.48 0.71 -14.11 16
19 H -0.28 -15.54 7.11 99.48 0.71 -14.84 16
20 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16
21 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16
22 H 0.10 2.23 6.02 -2.39 -0.01 2.22 16
23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
24 H 0.12 2.54 5.49 -2.39 -0.01 2.53 16
25 H 0.11 2.27 8.06 -2.39 -0.02 2.25 16
26 H 0.03 0.85 8.14 -2.38 -0.02 0.83 16
27 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16
28 H 0.09 1.84 8.08 -2.39 -0.02 1.82 16
29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
30 H 0.06 2.76 8.11 -2.39 -0.02 2.74 16
31 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16
32 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16
Total: -1.00 -76.75 258.25 1.21 -75.53
By element:
Atomic # 1 Polarization: -1.83 SS G_CDS: 1.09 Total: -0.74 kcal
Atomic # 6 Polarization: 12.49 SS G_CDS: 4.77 Total: 17.26 kcal
Atomic # 7 Polarization: -105.26 SS G_CDS: -6.63 Total: -111.89 kcal
Atomic # 8 Polarization: -32.26 SS G_CDS: -0.04 Total: -32.30 kcal
Atomic # 14 Polarization: 50.11 SS G_CDS: 2.03 Total: 52.14 kcal
Total: -76.75 1.21 -75.53 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260103313.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.730 kcal
(2) G-P(sol) polarization free energy of solvation -76.748 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.017 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.805 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds