Wall clock time and date at job start Mon Mar 30 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47896 * 110.99782 * 2 1 4 4 C 1.53997 * 107.05754 * 145.84347 * 3 2 1 5 5 C 1.54599 * 105.13815 * 358.77976 * 4 3 2 6 6 H 1.09002 * 110.72617 * 96.39862 * 5 4 3 7 7 C 1.52998 * 110.72221 * 219.50567 * 5 4 3 8 8 C 1.50701 * 109.47294 * 182.54781 * 7 5 4 9 9 O 1.21303 * 119.99878 * 359.97438 * 8 7 5 10 10 N 1.34768 * 120.00460 * 179.97438 * 8 7 5 11 11 C 1.37097 * 120.00138 * 180.02562 * 10 8 7 12 12 H 1.07998 * 120.00038 * 359.97438 * 11 10 8 13 13 C 1.38956 * 120.00032 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00000 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00068 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47117 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46961 * 119.99669 * 15 13 11 18 18 H 1.48498 * 109.47506 * 239.99818 * 15 13 11 19 19 C 1.49005 * 110.97145 * 117.44663 * 2 1 3 20 20 H 1.09004 * 109.47732 * 59.87299 * 1 2 3 21 21 H 1.09001 * 109.47210 * 179.87149 * 1 2 3 22 22 H 1.09000 * 109.47031 * 299.86989 * 1 2 3 23 23 H 1.09008 * 109.92080 * 26.49628 * 3 2 1 24 24 H 1.08999 * 110.08833 * 265.28765 * 3 2 1 25 25 H 1.08999 * 110.31386 * 239.86336 * 4 3 2 26 26 H 1.09002 * 110.30705 * 117.69177 * 4 3 2 27 27 H 1.09006 * 109.47400 * 302.54582 * 7 5 4 28 28 H 1.08993 * 109.47613 * 62.55085 * 7 5 4 29 29 H 0.97006 * 120.00230 * 0.02562 * 10 8 7 30 30 H 0.97000 * 120.00322 * 180.02562 * 14 13 11 31 31 H 1.09000 * 110.86440 * 81.89429 * 19 2 1 32 32 H 1.09003 * 110.68346 * 318.61724 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3807 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4491 -0.0930 1.3153 6 1 4.1115 -0.6541 0.6561 7 6 3.9630 -0.1309 2.7559 8 6 4.1590 -1.5631 3.1818 9 8 3.9116 -2.4649 2.4092 10 7 4.6093 -1.8421 4.4211 11 6 4.7881 -3.1450 4.8083 12 1 4.5678 -3.9479 4.1204 13 6 5.2518 -3.4326 6.0862 14 7 5.5195 -2.4557 6.9234 15 14 5.4948 -5.2079 6.6141 16 1 5.1254 -6.1120 5.4954 17 1 6.9183 -5.4261 6.9767 18 1 4.6346 -5.4971 7.7895 19 6 2.0023 -0.6413 1.2347 20 1 -0.3635 0.5158 -0.8888 21 1 -0.3634 -1.0277 -0.0023 22 1 -0.3633 0.5118 0.8911 23 1 1.2757 2.0562 0.4572 24 1 2.2116 1.7001 -1.0202 25 1 3.2135 2.0428 1.6767 26 1 4.1469 1.6455 0.2024 27 1 4.9133 0.3995 2.8168 28 1 3.2371 0.3474 3.4134 29 1 4.8069 -1.1210 5.0391 30 1 5.8435 -2.6564 7.8154 31 1 2.0071 -1.7269 1.1373 32 1 1.4256 -0.3349 2.1075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260146246.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:34 Heat of formation + Delta-G solvation = -66.795805 kcal Electronic energy + Delta-G solvation = -14128.898382 eV Core-core repulsion = 11701.855878 eV Total energy + Delta-G solvation = -2427.042504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.60417 -39.27544 -36.01013 -34.19481 -33.22748 -30.77559 -28.53790 -26.87188 -25.41662 -22.11497 -21.47968 -20.66394 -19.82499 -17.79251 -17.01321 -16.42762 -16.25286 -15.98933 -15.63909 -14.96253 -14.58541 -14.39228 -13.86444 -13.57409 -13.15937 -13.01577 -12.86821 -12.42685 -12.34671 -12.22190 -12.15247 -12.01093 -11.70761 -11.48878 -11.38601 -10.27665 -10.00497 -9.37606 -8.46999 -5.95557 1.36074 1.41085 1.55413 2.07453 2.29998 3.04859 3.20651 3.28063 3.76491 3.81156 4.04036 4.30024 4.36170 4.46490 4.50960 4.58752 4.70646 4.73236 4.82273 4.93206 4.96740 5.03762 5.09588 5.33450 5.42014 5.42607 5.91633 6.01127 6.14160 6.59955 7.12929 7.57607 8.13392 8.70804 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.061536 B = 0.006281 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.907531 B = 4457.143419 C = 4695.447925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.543 5.543 3 C 0.035 3.965 4 C -0.120 4.120 5 C -0.069 4.069 6 H 0.062 0.938 7 C -0.112 4.112 8 C 0.436 3.564 9 O -0.629 6.629 10 N -0.576 5.576 11 C -0.334 4.334 12 H 0.078 0.922 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.992 3.008 16 H -0.274 1.274 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.050 3.950 20 H 0.085 0.915 21 H 0.061 0.939 22 H 0.031 0.969 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.396 0.604 30 H 0.277 0.723 31 H 0.057 0.943 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 9.784 -7.627 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.268 5.268 3 C -0.092 4.092 4 C -0.158 4.158 5 C -0.088 4.088 6 H 0.081 0.919 7 C -0.152 4.152 8 C 0.225 3.775 9 O -0.517 6.517 10 N -0.213 5.213 11 C -0.464 4.464 12 H 0.096 0.904 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.816 3.184 16 H -0.199 1.199 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.078 4.078 20 H 0.104 0.896 21 H 0.080 0.920 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.230 0.770 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.609 8.914 -8.416 13.482 hybrid contribution -0.030 -0.350 1.501 1.541 sum -5.639 8.564 -6.916 12.369 Atomic orbital electron populations 1.22541 0.87088 1.02167 1.01440 1.64816 1.09134 1.16102 1.36734 1.22941 0.96023 0.89017 1.01269 1.22501 0.98255 0.94742 1.00322 1.21661 0.95745 0.96916 0.94522 0.91934 1.21544 1.03954 0.92355 0.97338 1.21073 0.81804 0.92451 0.82192 1.90490 1.57302 1.50010 1.53852 1.42017 1.58352 1.08094 1.12804 1.19719 1.43139 0.84989 0.98543 0.90442 1.26035 0.96270 1.03761 0.95239 1.69676 1.45372 1.33453 1.07757 0.84881 0.78331 0.77119 0.78062 1.19899 1.19532 1.19556 1.23195 0.94897 0.99121 0.90576 0.89648 0.92033 0.95032 0.92566 0.89343 0.89547 0.89561 0.87734 0.88441 0.76993 0.91313 0.92479 0.94247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.40 127.69 1.20 1.57 16 2 N -0.54 -15.36 5.56 -907.84 -5.05 -20.40 16 3 C 0.04 0.77 6.70 86.45 0.58 1.35 16 4 C -0.12 -2.70 6.51 31.48 0.20 -2.50 16 5 C -0.07 -2.20 2.62 -9.59 -0.03 -2.22 16 6 H 0.06 2.32 7.97 -2.39 -0.02 2.30 16 7 C -0.11 -3.77 5.08 29.85 0.15 -3.62 16 8 C 0.44 20.92 7.59 87.66 0.67 21.59 16 9 O -0.63 -35.02 14.26 -3.10 -0.04 -35.07 16 10 N -0.58 -29.98 5.29 -306.98 -1.62 -31.60 16 11 C -0.33 -19.28 9.68 84.04 0.81 -18.46 16 12 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 13 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 14 N -0.92 -50.21 13.05 21.66 0.28 -49.92 16 15 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 C 0.05 1.69 5.41 86.56 0.47 2.16 16 20 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.03 0.68 8.01 -2.39 -0.02 0.66 16 23 H 0.06 1.06 7.74 -2.38 -0.02 1.05 16 24 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.09 1.64 7.85 -2.39 -0.02 1.62 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 28 H 0.10 2.91 8.05 -2.39 -0.02 2.89 16 29 H 0.40 19.55 7.90 -92.70 -0.73 18.82 16 30 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.06 2.37 7.23 -2.39 -0.02 2.36 16 32 H 0.04 1.30 7.82 -2.39 -0.02 1.28 16 Total: -1.00 -66.64 266.26 0.49 -66.15 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.37 Total: 25.81 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.53 Total: -0.41 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -6.39 Total: -101.93 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.04 Total: -35.07 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -66.64 0.49 -66.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260146246.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.647 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds