Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21280 * 120.00436 * 2 1 4 4 N 1.34783 * 119.99508 * 180.02562 * 2 1 3 5 5 C 1.47020 * 125.64933 * 359.97438 * 4 2 1 6 6 C 1.54323 * 107.26852 * 178.96140 * 5 4 2 7 7 C 1.55150 * 102.94393 * 337.80945 * 6 5 4 8 8 H 1.09004 * 111.00240 * 277.38739 * 7 6 5 9 9 C 1.53006 * 111.00549 * 153.57793 * 7 6 5 10 10 N 1.46504 * 109.46883 * 174.99995 * 9 7 6 11 11 C 1.36936 * 119.99477 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00404 * 359.97438 * 11 10 9 13 13 C 1.38814 * 119.99891 * 179.97438 * 11 10 9 14 14 N 1.31625 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00093 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47326 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47231 * 119.99688 * 15 13 11 18 18 H 1.48502 * 109.47486 * 239.99534 * 15 13 11 19 19 C 1.47421 * 125.64436 * 180.02562 * 4 2 1 20 20 H 1.08995 * 109.47025 * 270.00306 * 1 2 3 21 21 H 1.08995 * 109.46619 * 29.99733 * 1 2 3 22 22 H 1.08993 * 109.47325 * 149.99608 * 1 2 3 23 23 H 1.08997 * 109.88509 * 59.54614 * 5 4 2 24 24 H 1.08999 * 109.88019 * 298.37601 * 5 4 2 25 25 H 1.08996 * 110.72010 * 219.44036 * 6 5 4 26 26 H 1.09003 * 110.87183 * 96.24498 * 6 5 4 27 27 H 1.09001 * 109.47002 * 294.99493 * 9 7 6 28 28 H 1.08993 * 109.46955 * 54.99930 * 9 7 6 29 29 H 0.96992 * 119.99966 * 359.97438 * 10 9 7 30 30 H 0.96993 * 120.00031 * 180.02562 * 14 13 11 31 31 H 1.08997 * 110.37164 * 85.26348 * 19 4 2 32 32 H 1.09002 * 110.36736 * 322.93673 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.5746 -2.5067 -0.0006 6 6 2.7279 -3.5316 -0.0280 7 6 3.9079 -2.7114 -0.6128 8 1 3.8587 -2.6776 -1.7012 9 6 5.2518 -3.2738 -0.1449 10 7 6.3406 -2.5525 -0.8087 11 6 7.6426 -2.8845 -0.5446 12 1 7.8669 -3.6777 0.1533 13 6 8.6744 -2.2015 -1.1739 14 7 8.4012 -1.2352 -2.0248 15 14 10.4505 -2.6539 -0.8132 16 1 10.4882 -3.7654 0.1709 17 1 11.1169 -3.0827 -2.0690 18 1 11.1584 -1.4738 -0.2552 19 6 3.6479 -1.3124 -0.0001 20 1 -0.3633 0.0001 1.0276 21 1 -0.3632 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5139 23 1 0.9481 -2.6300 -0.8839 24 1 0.9783 -2.6436 0.9015 25 1 2.4823 -4.3713 -0.6780 26 1 2.9617 -3.8802 0.9780 27 1 5.3405 -3.1521 0.9347 28 1 5.3103 -4.3324 -0.3973 29 1 6.1393 -1.8404 -1.4356 30 1 9.1220 -0.7582 -2.4647 31 1 4.0334 -1.2665 1.0184 32 1 4.1060 -0.5379 -0.6152 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260265726.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -54.902357 kcal Electronic energy + Delta-G solvation = -14053.119228 eV Core-core repulsion = 11626.592463 eV Total energy + Delta-G solvation = -2426.526765 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.03668 -38.80096 -36.44637 -34.01290 -32.23765 -30.72319 -29.70594 -26.83897 -24.96059 -23.38982 -21.43744 -20.30780 -19.11015 -17.99575 -17.47101 -16.60055 -16.41231 -15.64741 -15.34422 -15.09641 -14.68723 -14.17933 -13.80003 -13.61591 -13.24687 -13.12681 -13.00220 -12.93911 -12.77060 -12.19597 -12.12070 -11.85624 -11.62406 -11.58415 -11.02504 -10.93553 -9.69133 -9.01994 -7.96516 -5.26160 1.46364 1.47943 1.58029 1.59178 2.04500 2.55197 3.36472 3.45069 3.66483 3.86919 3.91554 4.18699 4.31963 4.44204 4.52136 4.59391 4.63732 4.71575 4.84034 4.87225 4.97437 5.06190 5.10093 5.21817 5.28612 5.42285 5.49325 6.25531 6.56679 7.12748 7.31208 8.07510 8.29018 9.27732 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050285 B = 0.006380 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.694566 B = 4387.589380 C = 4805.432031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.506 3.494 3 O -0.613 6.613 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.114 4.114 7 C -0.098 4.098 8 H 0.075 0.925 9 C 0.162 3.838 10 N -0.750 5.750 11 C -0.244 4.244 12 H 0.081 0.919 13 C -0.080 4.080 14 N -0.974 5.974 15 Si 0.976 3.024 16 H -0.262 1.262 17 H -0.292 1.292 18 H -0.296 1.296 19 C 0.115 3.885 20 H 0.114 0.886 21 H 0.092 0.908 22 H 0.110 0.890 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.024 0.976 28 H 0.037 0.963 29 H 0.371 0.629 30 H 0.251 0.749 31 H 0.056 0.944 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.824 -6.377 4.954 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.298 3.702 3 O -0.496 6.496 4 N -0.354 5.354 5 C -0.022 4.022 6 C -0.152 4.152 7 C -0.117 4.117 8 H 0.093 0.907 9 C 0.036 3.964 10 N -0.392 5.392 11 C -0.376 4.376 12 H 0.098 0.902 13 C -0.272 4.272 14 N -0.625 5.625 15 Si 0.805 3.195 16 H -0.186 1.186 17 H -0.219 1.219 18 H -0.223 1.223 19 C -0.009 4.009 20 H 0.133 0.867 21 H 0.111 0.889 22 H 0.129 0.871 23 H 0.113 0.887 24 H 0.118 0.882 25 H 0.127 0.873 26 H 0.107 0.893 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.202 0.798 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.464 -5.900 5.064 20.034 hybrid contribution 1.494 0.606 -0.302 1.640 sum -16.970 -5.294 4.762 18.403 Atomic orbital electron populations 1.21888 0.86667 1.06308 1.06420 1.21661 0.92595 0.81335 0.74575 1.90712 1.72507 1.33086 1.53292 1.48849 1.06942 1.07492 1.72162 1.22382 0.96397 0.79180 1.04260 1.22687 0.91774 0.97593 1.03152 1.22417 0.95534 0.93649 1.00144 0.90707 1.20788 0.85656 0.94937 0.95015 1.42660 1.02035 1.42227 1.52275 1.19731 0.84307 1.13870 1.19689 0.90154 1.25642 1.02411 0.99054 1.00059 1.69849 1.32075 1.26974 1.33621 0.85027 0.79818 0.77351 0.77286 1.18591 1.21926 1.22318 1.22067 0.81201 0.97730 0.99852 0.86721 0.88874 0.87132 0.88694 0.88179 0.87252 0.89285 0.95822 0.94545 0.79789 0.94066 0.92528 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.90 71.24 0.71 -1.66 16 2 C 0.51 14.87 7.96 87.66 0.70 15.57 16 3 O -0.61 -25.63 17.36 -3.03 -0.05 -25.68 16 4 N -0.62 -16.96 3.33 -811.76 -2.70 -19.66 16 5 C 0.10 1.59 6.16 86.73 0.53 2.12 16 6 C -0.11 -2.11 6.42 31.78 0.20 -1.91 16 7 C -0.10 -3.00 3.05 -9.39 -0.03 -3.03 16 8 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 9 C 0.16 6.27 5.72 86.38 0.49 6.77 16 10 N -0.75 -38.97 5.55 -343.43 -1.91 -40.88 16 11 C -0.24 -13.89 9.99 84.03 0.84 -13.05 16 12 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 13 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 14 N -0.97 -62.03 13.06 21.65 0.28 -61.75 16 15 Si 0.98 47.10 29.55 68.60 2.03 49.12 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 18 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 19 C 0.11 4.04 6.32 86.86 0.55 4.59 16 20 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.11 1.00 7.06 -2.39 -0.02 0.98 16 23 H 0.09 1.08 7.77 -2.39 -0.02 1.06 16 24 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.09 1.52 8.04 -2.39 -0.02 1.50 16 27 H 0.02 0.92 7.96 -2.39 -0.02 0.90 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.37 20.98 7.67 -92.71 -0.71 20.27 16 30 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.06 2.09 7.91 -2.39 -0.02 2.07 16 32 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 Total: -1.00 -77.89 270.62 2.50 -75.38 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.39 Total: 18.32 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 4.46 Total: 5.14 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -4.32 Total: -122.29 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -77.89 2.50 -75.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260265726.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.480 kcal (2) G-P(sol) polarization free energy of solvation -77.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds