Wall clock time and date at job start Mon Mar 30 2020 02:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 120.00033 * 2 1 4 4 N 1.34779 * 119.99735 * 180.02562 * 2 1 3 5 5 C 1.47068 * 136.06001 * 359.62003 * 4 2 1 6 6 C 1.53760 * 87.88426 * 152.97074 * 5 4 2 7 7 C 1.52998 * 114.26338 * 139.79590 * 6 5 4 8 8 N 1.46903 * 109.47235 * 91.47587 * 7 6 5 9 9 C 1.46891 * 111.00039 * 180.02562 * 8 7 6 10 10 C 1.50708 * 109.47303 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99755 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00361 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99698 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00187 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46828 * 90.00460 * 14 12 10 16 16 H 1.48494 * 109.47289 * 210.00276 * 14 12 10 17 17 H 1.48500 * 109.47200 * 330.00772 * 14 12 10 18 18 C 1.47067 * 136.05232 * 180.02562 * 4 2 1 19 19 H 1.09002 * 109.47152 * 269.99891 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.99992 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.99972 * 1 2 3 22 22 H 1.08995 * 113.46676 * 267.70582 * 5 4 2 23 23 H 1.09003 * 113.46340 * 38.14714 * 5 4 2 24 24 H 1.09001 * 114.39202 * 272.67895 * 6 5 4 25 25 H 1.08997 * 109.47017 * 211.46972 * 7 6 5 26 26 H 1.09000 * 109.47428 * 331.47627 * 7 6 5 27 27 H 1.00905 * 110.99974 * 303.95314 * 8 7 6 28 28 H 1.09008 * 109.47278 * 299.99287 * 9 8 7 29 29 H 1.08996 * 109.47550 * 59.99857 * 9 8 7 30 30 H 0.97003 * 119.99584 * 179.97438 * 13 12 10 31 31 H 1.08990 * 113.47221 * 321.86278 * 18 4 2 32 32 H 1.09005 * 113.46914 * 92.24556 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5946 0.0056 6 6 3.1646 -2.8713 -0.6996 7 6 3.8908 -4.1224 -0.2015 8 7 3.4911 -5.2776 -1.0163 9 6 4.1698 -6.4999 -0.5654 10 6 3.7354 -7.6610 -1.4223 11 1 3.0263 -7.5063 -2.2222 12 6 4.2438 -8.9206 -1.1859 13 7 5.1076 -9.1088 -0.2123 14 14 3.7048 -10.3598 -2.2476 15 1 4.6151 -10.4824 -3.4145 16 1 3.7537 -11.6103 -1.4483 17 1 2.3171 -10.1310 -2.7243 18 6 3.5942 -1.5740 -0.0002 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 -0.8900 -0.5138 21 1 -0.3633 0.8900 -0.5138 22 1 1.7665 -3.0226 1.0062 23 1 0.9552 -2.8281 -0.6064 24 1 3.1236 -2.8009 -1.7865 25 1 4.9675 -3.9747 -0.2843 26 1 3.6280 -4.3045 0.8406 27 1 2.4892 -5.3967 -1.0079 28 1 5.2486 -6.3689 -0.6504 29 1 3.9086 -6.6982 0.4740 30 1 5.4651 -9.9951 -0.0457 31 1 4.2291 -0.9380 -0.6169 32 1 4.0001 -1.7324 0.9989 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260273433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:15 Heat of formation + Delta-G solvation = -29.208011 kcal Electronic energy + Delta-G solvation = -13574.992868 eV Core-core repulsion = 11149.580294 eV Total energy + Delta-G solvation = -2425.412575 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.42912 -39.13234 -36.78131 -34.51020 -32.24926 -30.30794 -28.35956 -26.94537 -25.64431 -23.32923 -21.66137 -19.98378 -18.58448 -17.95273 -17.14970 -16.77882 -16.56916 -16.23903 -15.30018 -14.96999 -14.72397 -14.11599 -13.89746 -13.51399 -13.42691 -13.31118 -13.05776 -12.82759 -12.73437 -12.44003 -12.22959 -11.88784 -11.51106 -11.21243 -10.89519 -10.62582 -9.80065 -9.06240 -8.19396 -6.30013 1.45098 1.46384 1.54332 1.57367 1.85707 2.43200 3.14730 3.23305 3.57329 3.68223 4.00772 4.25446 4.32905 4.39070 4.51105 4.56295 4.61372 4.64399 4.76408 4.82318 4.92158 5.06504 5.15134 5.32288 5.35072 5.65811 6.06510 6.49101 6.69890 6.79548 6.96246 7.05507 7.41361 8.92099 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.076132 B = 0.004708 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.695368 B = 5945.354116 C = 6164.456666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.527 3.473 3 O -0.607 6.607 4 N -0.650 5.650 5 C 0.108 3.892 6 C -0.106 4.106 7 C 0.074 3.926 8 N -0.688 5.688 9 C 0.206 3.794 10 C -0.534 4.534 11 H 0.067 0.933 12 C 0.001 3.999 13 N -0.935 5.935 14 Si 0.971 3.029 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.261 1.261 18 C 0.101 3.899 19 H 0.110 0.890 20 H 0.101 0.899 21 H 0.097 0.903 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.339 0.661 28 H -0.002 1.002 29 H -0.035 1.035 30 H 0.264 0.736 31 H 0.070 0.930 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.719 11.717 1.036 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.320 3.680 3 O -0.490 6.490 4 N -0.384 5.384 5 C -0.014 4.014 6 C -0.126 4.126 7 C -0.056 4.056 8 N -0.319 5.319 9 C 0.078 3.922 10 C -0.572 4.572 11 H 0.085 0.915 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.796 3.204 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.022 4.022 19 H 0.129 0.871 20 H 0.120 0.880 21 H 0.115 0.885 22 H 0.117 0.883 23 H 0.122 0.878 24 H 0.127 0.873 25 H 0.080 0.920 26 H 0.050 0.950 27 H 0.157 0.843 28 H 0.016 0.984 29 H -0.017 1.017 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.985 12.478 0.627 15.390 hybrid contribution -0.067 -0.986 0.633 1.174 sum -9.052 11.493 1.260 14.684 Atomic orbital electron populations 1.21848 0.87527 1.06084 1.06158 1.21289 0.91920 0.80680 0.74085 1.90686 1.72288 1.32306 1.53708 1.49855 1.10031 1.06446 1.72090 1.23378 0.98988 0.77192 1.01796 1.22881 0.96051 0.92501 1.01132 1.21773 0.99728 0.89661 0.94482 1.60503 1.12007 1.03939 1.55404 1.19215 0.93421 0.87173 0.92406 1.21585 1.26096 0.93186 1.16364 0.91507 1.25930 0.95024 1.02065 0.96694 1.70090 1.31710 1.23593 1.32191 0.85357 0.79132 0.77713 0.78237 1.20160 1.20937 1.18476 1.23090 0.84313 0.93509 1.01314 0.87119 0.88049 0.88450 0.88278 0.87844 0.87334 0.91989 0.95029 0.84348 0.98350 1.01713 0.92708 0.91104 0.88782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.18 71.24 0.73 -1.53 16 2 C 0.53 13.20 8.19 87.66 0.72 13.92 16 3 O -0.61 -21.16 17.88 -3.02 -0.05 -21.22 16 4 N -0.65 -14.75 3.69 -857.67 -3.16 -17.91 16 5 C 0.11 1.96 7.85 83.27 0.65 2.61 16 6 C -0.11 -2.43 4.26 -10.37 -0.04 -2.48 16 7 C 0.07 2.21 5.60 86.30 0.48 2.70 16 8 N -0.69 -26.61 6.49 -517.93 -3.36 -29.97 16 9 C 0.21 10.47 5.44 85.56 0.47 10.94 16 10 C -0.53 -29.31 9.32 25.60 0.24 -29.07 16 11 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 12 C 0.00 0.05 5.46 84.65 0.46 0.52 16 13 N -0.94 -55.37 13.29 21.45 0.28 -55.09 16 14 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 C 0.10 2.31 8.19 83.19 0.68 3.00 16 19 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 20 H 0.10 1.03 7.76 -2.39 -0.02 1.01 16 21 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.10 1.62 7.88 -2.39 -0.02 1.60 16 23 H 0.10 1.46 7.96 -2.39 -0.02 1.44 16 24 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.03 0.92 7.81 -2.39 -0.02 0.90 16 27 H 0.34 11.92 8.72 -89.69 -0.78 11.14 16 28 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 29 H -0.03 -1.89 8.14 -2.39 -0.02 -1.91 16 30 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.98 8.11 -2.38 -0.02 1.96 16 Total: -1.00 -69.81 278.05 0.43 -69.38 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.31 Total: 9.16 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 4.38 Total: 0.61 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -6.24 Total: -102.97 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.81 0.43 -69.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260273433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.172 kcal (2) G-P(sol) polarization free energy of solvation -69.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds