Wall clock time and date at job start Mon Mar 30 2020 02:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.45753 * 110.99896 * 2 1 4 4 C 1.51681 * 113.94040 * 57.30188 * 3 2 1 5 5 C 1.53119 * 110.75327 * 66.76474 * 4 3 2 6 6 N 1.47256 * 108.39998 * 274.41628 * 5 4 3 7 7 C 1.46493 * 120.07274 * 249.96879 * 6 5 4 8 8 C 1.50706 * 109.47128 * 90.00507 * 7 6 5 9 9 H 1.08000 * 119.99302 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00436 * 179.72498 * 8 7 6 11 11 N 1.31515 * 119.99684 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00405 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47154 * 89.99418 * 12 10 8 14 14 H 1.48493 * 109.47010 * 209.99942 * 12 10 8 15 15 H 1.48502 * 109.46736 * 329.99638 * 12 10 8 16 16 C 1.33607 * 119.84806 * 70.25333 * 6 5 4 17 17 O 1.21283 * 119.88022 * 180.25476 * 16 6 5 18 18 C 1.46877 * 111.00122 * 125.82818 * 2 1 3 19 19 H 1.08998 * 109.46902 * 60.00267 * 1 2 3 20 20 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46936 * 299.99890 * 1 2 3 22 22 H 1.09000 * 108.59275 * 296.14964 * 3 2 1 23 23 H 1.09000 * 108.58929 * 178.45268 * 3 2 1 24 24 H 1.08999 * 109.22042 * 306.43877 * 4 3 2 25 25 H 1.08995 * 109.22229 * 187.09555 * 4 3 2 26 26 H 1.08998 * 109.67789 * 154.69226 * 5 4 3 27 27 H 1.08998 * 109.67851 * 34.14499 * 5 4 3 28 28 H 1.09001 * 109.47786 * 330.00780 * 7 6 5 29 29 H 1.08998 * 109.47558 * 210.00642 * 7 6 5 30 30 H 0.97004 * 120.00247 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.60376 * 80.51891 * 18 2 1 32 32 H 1.08999 * 109.60079 * 200.84514 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9913 1.3607 0.0000 4 6 1.5127 2.2037 1.1666 5 6 2.0746 1.6709 2.4876 6 7 1.1834 0.6050 2.9755 7 6 0.3554 0.8270 4.1634 8 6 -0.9748 1.4012 3.7485 9 1 -1.1822 1.5831 2.7043 10 6 -1.9286 1.6897 4.7013 11 7 -1.6779 1.4632 5.9723 12 14 -3.5776 2.4009 4.1869 13 1 -4.5330 1.2951 3.9232 14 1 -4.1058 3.2627 5.2746 15 1 -3.4045 3.2101 2.9538 16 6 1.1360 -0.5669 2.3356 17 8 0.3987 -1.4436 2.7342 18 6 1.9954 -0.8026 1.1117 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6908 1.8483 -0.9274 23 1 3.0800 1.3150 0.0279 24 1 0.4237 2.1792 1.2041 25 1 1.8431 3.2327 1.0252 26 1 2.1177 2.4771 3.2199 27 1 3.0742 1.2679 2.3253 28 1 0.8593 1.5244 4.8326 29 1 0.1972 -0.1206 4.6784 30 1 -2.3491 1.6657 6.6427 31 1 1.9686 -1.8591 0.8449 32 1 3.0223 -0.5049 1.3236 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260523813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:40 Heat of formation + Delta-G solvation = -25.889909 kcal Electronic energy + Delta-G solvation = -15123.534299 eV Core-core repulsion = 12698.265608 eV Total energy + Delta-G solvation = -2425.268691 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.06253 -36.72666 -35.01551 -32.68384 -31.12118 -28.71038 -26.95343 -25.81112 -23.96169 -22.48045 -20.25893 -18.20406 -16.74017 -16.53063 -15.82637 -15.34557 -14.98317 -14.40526 -13.52143 -13.35003 -13.25380 -12.87603 -12.20105 -12.00048 -11.61618 -11.59577 -11.38267 -11.24813 -11.14371 -10.78305 -10.65492 -10.54430 -10.07866 -9.63363 -9.17548 -8.46193 -8.00281 -7.71013 -6.07292 -4.12088 3.28296 3.31432 3.34783 3.37869 3.90330 4.35317 4.41777 4.97812 5.00151 5.14736 5.28060 5.36472 5.62122 5.65781 5.68741 5.85848 5.90560 6.05279 6.07621 6.13921 6.31005 6.60065 6.97244 7.09350 7.25052 7.41596 7.51506 7.88777 8.19917 8.40900 8.86674 9.07801 9.53022 11.00885 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035977 B = 0.010739 C = 0.010274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.082394 B = 2606.697098 C = 2724.545864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.525 5.525 3 C 0.052 3.948 4 C -0.180 4.180 5 C 0.115 3.885 6 N -0.595 5.595 7 C 0.244 3.756 8 C -0.523 4.523 9 H 0.056 0.944 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.279 1.279 14 H -0.285 1.285 15 H -0.275 1.275 16 C 0.477 3.523 17 O -0.547 6.547 18 C 0.036 3.964 19 H 0.065 0.935 20 H 0.070 0.930 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.295 1.883 -9.966 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.249 5.249 3 C -0.076 4.076 4 C -0.220 4.220 5 C -0.009 4.009 6 N -0.327 5.327 7 C 0.125 3.875 8 C -0.562 4.562 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.533 5.533 12 Si 0.725 3.275 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.200 1.200 16 C 0.261 3.739 17 O -0.424 6.424 18 C -0.095 4.095 19 H 0.084 0.916 20 H 0.088 0.912 21 H 0.072 0.928 22 H 0.091 0.909 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.976 1.222 -9.970 12.827 hybrid contribution -1.232 0.945 0.575 1.656 sum 6.744 2.167 -9.395 11.767 Atomic orbital electron populations 1.22561 0.86563 1.02921 1.01790 1.61955 1.09129 1.12453 1.41365 1.21806 0.99734 0.88044 0.98050 1.22448 1.03830 1.00064 0.95679 1.21663 0.92206 0.91303 0.95756 1.48286 1.41713 1.12415 1.30250 1.19326 0.89044 0.97817 0.81358 1.21377 0.99259 1.42164 0.93378 0.92599 1.24935 0.98600 0.95735 0.94827 1.69930 1.35011 1.48223 1.00148 0.86517 0.83946 0.78975 0.78109 1.20528 1.21115 1.19955 1.21136 0.84403 0.82831 0.85493 1.90681 1.40759 1.43758 1.67199 1.22723 0.98552 1.00457 0.87731 0.91631 0.91154 0.92804 0.90913 0.91172 0.89841 0.90641 0.89665 0.92160 0.95136 0.93910 0.92705 0.88120 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.37 60.07 0.50 0.66 16 2 N -0.53 -7.88 5.09 -245.77 -1.25 -9.13 16 3 C 0.05 0.66 5.23 -5.11 -0.03 0.64 16 4 C -0.18 -2.60 5.45 -27.34 -0.15 -2.75 16 5 C 0.11 1.84 5.95 -3.57 -0.02 1.82 16 6 N -0.59 -12.62 2.31 -174.42 -0.40 -13.02 16 7 C 0.24 6.40 5.16 -5.19 -0.03 6.37 16 8 C -0.52 -14.71 9.39 -34.44 -0.32 -15.03 16 9 H 0.06 1.56 6.82 -52.49 -0.36 1.20 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 12 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.48 10.12 4.90 -11.16 -0.05 10.07 16 17 O -0.55 -14.23 16.63 5.55 0.09 -14.14 16 18 C 0.04 0.58 5.80 -4.65 -0.03 0.55 16 19 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 20 H 0.07 1.22 8.12 -51.93 -0.42 0.80 16 21 H 0.05 1.09 4.64 -51.93 -0.24 0.85 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 24 H 0.08 1.49 5.86 -51.93 -0.30 1.19 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.36 7.79 -51.93 -0.40 0.96 16 27 H 0.06 0.80 6.77 -51.93 -0.35 0.45 16 28 H 0.03 0.81 7.88 -51.93 -0.41 0.40 16 29 H 0.04 1.28 7.40 -51.93 -0.38 0.90 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.10 1.55 8.13 -51.93 -0.42 1.13 16 32 H 0.09 1.14 6.68 -51.93 -0.35 0.80 16 LS Contribution 254.50 15.07 3.84 3.84 Total: -1.00 -32.33 254.50 -6.68 -39.02 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.45 Total: -1.47 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -0.22 Total: 3.97 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.92 Total: -48.04 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.33 -6.68 -39.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.127 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds