Wall clock time and date at job start Mon Mar 30 2020 02:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.45753 * 110.99896 * 2 1 4 4 C 1.51681 * 113.94040 * 57.30188 * 3 2 1 5 5 C 1.53119 * 110.75327 * 66.76474 * 4 3 2 6 6 N 1.47256 * 108.39998 * 274.41628 * 5 4 3 7 7 C 1.46493 * 120.07274 * 249.96879 * 6 5 4 8 8 C 1.50706 * 109.47128 * 90.00507 * 7 6 5 9 9 H 1.08000 * 119.99302 * 359.97438 * 8 7 6 10 10 C 1.37871 * 120.00436 * 179.72498 * 8 7 6 11 11 N 1.31515 * 119.99684 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00405 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47154 * 89.99418 * 12 10 8 14 14 H 1.48493 * 109.47010 * 209.99942 * 12 10 8 15 15 H 1.48502 * 109.46736 * 329.99638 * 12 10 8 16 16 C 1.33607 * 119.84806 * 70.25333 * 6 5 4 17 17 O 1.21283 * 119.88022 * 180.25476 * 16 6 5 18 18 C 1.46877 * 111.00122 * 125.82818 * 2 1 3 19 19 H 1.08998 * 109.46902 * 60.00267 * 1 2 3 20 20 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46936 * 299.99890 * 1 2 3 22 22 H 1.09000 * 108.59275 * 296.14964 * 3 2 1 23 23 H 1.09000 * 108.58929 * 178.45268 * 3 2 1 24 24 H 1.08999 * 109.22042 * 306.43877 * 4 3 2 25 25 H 1.08995 * 109.22229 * 187.09555 * 4 3 2 26 26 H 1.08998 * 109.67789 * 154.69226 * 5 4 3 27 27 H 1.08998 * 109.67851 * 34.14499 * 5 4 3 28 28 H 1.09001 * 109.47786 * 330.00780 * 7 6 5 29 29 H 1.08998 * 109.47558 * 210.00642 * 7 6 5 30 30 H 0.97004 * 120.00247 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.60376 * 80.51891 * 18 2 1 32 32 H 1.08999 * 109.60079 * 200.84514 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9913 1.3607 0.0000 4 6 1.5127 2.2037 1.1666 5 6 2.0746 1.6709 2.4876 6 7 1.1834 0.6050 2.9755 7 6 0.3554 0.8270 4.1634 8 6 -0.9748 1.4012 3.7485 9 1 -1.1822 1.5831 2.7043 10 6 -1.9286 1.6897 4.7013 11 7 -1.6779 1.4632 5.9723 12 14 -3.5776 2.4009 4.1869 13 1 -4.5330 1.2951 3.9232 14 1 -4.1058 3.2627 5.2746 15 1 -3.4045 3.2101 2.9538 16 6 1.1360 -0.5669 2.3356 17 8 0.3987 -1.4436 2.7342 18 6 1.9954 -0.8026 1.1117 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6908 1.8483 -0.9274 23 1 3.0800 1.3150 0.0279 24 1 0.4237 2.1792 1.2041 25 1 1.8431 3.2327 1.0252 26 1 2.1177 2.4771 3.2199 27 1 3.0742 1.2679 2.3253 28 1 0.8593 1.5244 4.8326 29 1 0.1972 -0.1206 4.6784 30 1 -2.3491 1.6657 6.6427 31 1 1.9686 -1.8591 0.8449 32 1 3.0223 -0.5049 1.3236 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260523813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:39 Heat of formation + Delta-G solvation = -50.510620 kcal Electronic energy + Delta-G solvation = -15124.601933 eV Core-core repulsion = 12698.265608 eV Total energy + Delta-G solvation = -2426.336325 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.56876 -38.22409 -36.70533 -34.75258 -32.51003 -30.44016 -28.50020 -27.31527 -25.50130 -24.33891 -21.43814 -19.81994 -18.79230 -18.05833 -17.49214 -16.74238 -16.55244 -16.16662 -15.11839 -14.80721 -14.61110 -14.40087 -14.13926 -13.59817 -13.29793 -13.09749 -12.85241 -12.80607 -12.61314 -12.56015 -12.38081 -11.91673 -11.82694 -11.56575 -10.80039 -10.67927 -9.50182 -9.36659 -8.26129 -6.40371 1.32169 1.35416 1.44620 1.73296 2.25369 2.40801 3.03440 3.07433 3.62616 3.88098 3.99667 4.15679 4.40615 4.45550 4.54030 4.57181 4.71136 4.82132 4.91835 4.94071 4.97397 5.09571 5.17706 5.40701 5.53052 5.77874 5.84160 6.02067 6.08918 6.66139 6.76456 7.24688 7.43541 8.81291 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035977 B = 0.010739 C = 0.010274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.082394 B = 2606.697098 C = 2724.545864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.049 3.951 4 C -0.173 4.173 5 C 0.106 3.894 6 N -0.598 5.598 7 C 0.258 3.742 8 C -0.534 4.534 9 H 0.052 0.948 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.965 3.035 13 H -0.282 1.282 14 H -0.274 1.274 15 H -0.261 1.261 16 C 0.468 3.532 17 O -0.610 6.610 18 C 0.050 3.950 19 H 0.090 0.910 20 H 0.055 0.945 21 H 0.014 0.986 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.043 0.957 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.023 0.977 29 H -0.007 1.007 30 H 0.267 0.733 31 H 0.106 0.894 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.576 3.282 -12.262 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.238 5.238 3 C -0.078 4.078 4 C -0.212 4.212 5 C -0.016 4.016 6 N -0.328 5.328 7 C 0.136 3.864 8 C -0.573 4.573 9 H 0.071 0.929 10 C -0.192 4.192 11 N -0.569 5.569 12 Si 0.790 3.210 13 H -0.208 1.208 14 H -0.199 1.199 15 H -0.185 1.185 16 C 0.255 3.745 17 O -0.491 6.491 18 C -0.081 4.081 19 H 0.109 0.891 20 H 0.074 0.926 21 H 0.032 0.968 22 H 0.112 0.888 23 H 0.124 0.876 24 H 0.062 0.938 25 H 0.125 0.875 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.041 0.959 29 H 0.011 0.989 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.304 2.661 -12.304 15.654 hybrid contribution -1.581 0.518 1.297 2.109 sum 7.723 3.179 -11.007 13.817 Atomic orbital electron populations 1.22450 0.87970 1.01743 1.01039 1.62045 1.07724 1.14076 1.39937 1.22000 1.01631 0.86238 0.97970 1.22377 1.01223 1.02280 0.95348 1.22063 0.93050 0.90014 0.96491 1.48315 1.41602 1.14111 1.28807 1.18788 0.89693 0.94674 0.83195 1.21622 1.00319 1.42087 0.93239 0.92946 1.25858 1.02512 0.96059 0.94796 1.70051 1.36414 1.49154 1.01261 0.85448 0.78869 0.78258 0.78463 1.20775 1.19878 1.18525 1.22272 0.84146 0.81699 0.86363 1.90641 1.43573 1.45735 1.69142 1.22752 0.99080 1.01363 0.84863 0.89113 0.92646 0.96778 0.88848 0.87641 0.93798 0.87495 0.90059 0.88078 0.95938 0.98896 0.92426 0.87601 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.37 127.69 1.07 1.60 16 2 N -0.51 -13.79 5.09 -931.49 -4.74 -18.53 16 3 C 0.05 1.02 5.23 86.09 0.45 1.47 16 4 C -0.17 -4.45 5.45 30.20 0.16 -4.29 16 5 C 0.11 3.15 5.95 86.27 0.51 3.66 16 6 N -0.60 -25.60 2.31 -824.78 -1.91 -27.51 16 7 C 0.26 14.18 5.16 85.64 0.44 14.62 16 8 C -0.53 -31.05 9.39 25.60 0.24 -30.80 16 9 H 0.05 3.02 6.82 -2.91 -0.02 3.00 16 10 C 0.01 0.38 5.46 84.65 0.46 0.85 16 11 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 12 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 16 C 0.47 20.04 4.90 88.06 0.43 20.47 16 17 O -0.61 -33.24 16.63 -3.04 -0.05 -33.29 16 18 C 0.05 1.47 5.80 85.78 0.50 1.97 16 19 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 20 H 0.05 1.92 8.12 -2.39 -0.02 1.91 16 21 H 0.01 0.57 4.64 -2.39 -0.01 0.56 16 22 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.11 1.56 7.78 -2.39 -0.02 1.54 16 24 H 0.04 1.52 5.86 -2.39 -0.01 1.50 16 25 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.08 2.48 7.79 -2.39 -0.02 2.46 16 27 H 0.10 2.22 6.77 -2.39 -0.02 2.20 16 28 H 0.02 1.25 7.88 -2.39 -0.02 1.23 16 29 H -0.01 -0.45 7.40 -2.39 -0.02 -0.47 16 30 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 31 H 0.11 3.03 8.13 -2.39 -0.02 3.01 16 32 H 0.13 2.70 6.68 -2.39 -0.02 2.68 16 Total: -1.00 -74.76 254.50 0.99 -73.78 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.10 Total: 5.22 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 4.27 Total: 9.54 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -6.36 Total: -102.68 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -0.05 Total: -33.29 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.76 0.99 -73.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260523813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.268 kcal (2) G-P(sol) polarization free energy of solvation -74.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds