Wall clock time and date at job start Mon Mar 30 2020 02:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46893 * 2 1 4 4 C 1.50699 * 109.47103 * 239.99735 * 2 1 3 5 5 H 1.07996 * 119.99877 * 239.99780 * 4 2 1 6 6 C 1.37871 * 119.99979 * 60.00087 * 4 2 1 7 7 N 1.31516 * 120.00082 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00179 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46914 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47343 * 119.99990 * 8 6 4 11 11 H 1.48496 * 109.47280 * 239.99992 * 8 6 4 12 12 N 1.46503 * 109.46876 * 119.99715 * 2 1 3 13 13 C 1.46381 * 119.32754 * 239.97468 * 12 2 1 14 14 C 1.53282 * 109.20760 * 151.02196 * 13 12 2 15 15 H 1.08999 * 109.58635 * 295.68899 * 14 13 12 16 16 C 1.53002 * 109.67277 * 175.11968 * 14 13 12 17 17 C 1.53243 * 108.54282 * 55.37965 * 14 13 12 18 18 N 1.46384 * 109.20453 * 304.60398 * 17 14 13 19 19 C 1.34129 * 121.34251 * 29.04828 * 18 17 14 20 20 O 1.21593 * 118.69674 * 179.40606 * 19 18 17 21 21 H 1.09006 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47306 * 299.99764 * 1 2 3 23 23 H 1.08995 * 109.47164 * 60.00244 * 1 2 3 24 24 H 0.97008 * 120.00007 * 180.02562 * 7 6 4 25 25 H 1.08991 * 109.52727 * 270.86530 * 13 12 2 26 26 H 1.09003 * 109.52280 * 31.00552 * 13 12 2 27 27 H 1.08994 * 109.46946 * 300.92043 * 16 14 13 28 28 H 1.09002 * 109.46612 * 60.92237 * 16 14 13 29 29 H 1.09000 * 109.46694 * 180.91976 * 16 14 13 30 30 H 1.09002 * 109.52434 * 184.66692 * 17 14 13 31 31 H 1.08995 * 109.52284 * 64.53960 * 17 14 13 32 32 H 0.97006 * 119.32690 * 209.02597 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1472 -0.1859 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 2.8594 0.0348 2.1498 14 6 2.6520 -0.5497 3.5515 15 1 1.6232 -0.3806 3.8694 16 6 3.6144 0.1182 4.5357 17 6 2.9332 -2.0552 3.4982 18 7 2.0878 -2.6669 2.4716 19 6 1.6861 -1.9748 1.3952 20 8 0.9936 -2.5338 0.5667 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7081 1.1607 -3.4845 25 1 3.9062 -0.0689 1.8646 26 1 2.5843 1.0896 2.1493 27 1 4.6409 -0.0470 4.2087 28 1 3.4122 1.1887 4.5716 29 1 3.4755 -0.3113 5.5278 30 1 2.7106 -2.5019 4.4673 31 1 3.9821 -2.2213 3.2529 32 1 1.8128 -3.5918 2.5717 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260606764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:16 Heat of formation + Delta-G solvation = -27.998194 kcal Electronic energy + Delta-G solvation = -14928.980483 eV Core-core repulsion = 12503.620370 eV Total energy + Delta-G solvation = -2425.360113 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86360 -36.21317 -34.94981 -32.50486 -31.97476 -28.99614 -25.94394 -25.13645 -24.90402 -22.45094 -20.18696 -18.30150 -16.91666 -16.47128 -15.66880 -15.03194 -14.67561 -14.03370 -13.62366 -13.42233 -13.02451 -12.47450 -12.37144 -12.12422 -11.78631 -11.21630 -10.96823 -10.82249 -10.73123 -10.67690 -10.29801 -10.17935 -9.88293 -9.15316 -8.68764 -8.40308 -8.21997 -7.40698 -5.88744 -3.89966 3.39295 3.46609 3.52694 3.63979 4.16409 4.45196 4.61627 4.90327 4.96202 5.21256 5.42715 5.48543 5.50881 5.68892 5.74733 5.92607 6.03916 6.10475 6.39348 6.71109 7.00603 7.18756 7.30930 7.50378 7.76042 7.91722 8.04416 8.24742 8.42599 8.96577 9.09497 9.60133 9.77268 11.17334 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043051 B = 0.009628 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.232629 B = 2907.613240 C = 3050.564828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.284 3.716 3 H 0.042 0.958 4 C -0.490 4.490 5 H 0.057 0.943 6 C 0.057 3.943 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.611 5.611 13 C 0.120 3.880 14 C -0.126 4.126 15 H 0.080 0.920 16 C -0.138 4.138 17 C 0.121 3.879 18 N -0.755 5.755 19 C 0.702 3.298 20 O -0.575 6.575 21 H 0.055 0.945 22 H 0.000 1.000 23 H 0.088 0.912 24 H 0.259 0.741 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 -1.132 13.501 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.184 3.816 3 H 0.060 0.940 4 C -0.530 4.530 5 H 0.076 0.924 6 C -0.143 4.143 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.348 5.348 13 C -0.004 4.004 14 C -0.145 4.145 15 H 0.098 0.902 16 C -0.196 4.196 17 C -0.004 4.004 18 N -0.415 5.415 19 C 0.403 3.597 20 O -0.451 6.451 21 H 0.074 0.926 22 H 0.019 0.981 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.560 -1.093 12.837 13.667 hybrid contribution 0.305 -0.737 -0.652 1.030 sum 4.865 -1.830 12.185 13.248 Atomic orbital electron populations 1.22167 0.98135 1.01463 0.99552 1.18737 0.91413 0.91422 0.80029 0.94039 1.21332 1.29976 1.11649 0.89993 0.92439 1.24843 0.95445 0.95200 0.98831 1.69887 1.37607 1.23379 1.23198 0.86431 0.78500 0.79529 0.82865 1.19984 1.21080 1.21318 1.47408 1.52829 1.09423 1.25091 1.21471 0.95186 0.96711 0.87060 1.21776 1.01099 0.95242 0.96429 0.90187 1.21654 0.99025 1.00750 0.98192 1.21408 0.94632 0.92912 0.91477 1.45139 1.57263 1.15663 1.23473 1.15526 0.80897 0.81994 0.81290 1.90922 1.42696 1.67828 1.43693 0.92646 0.98070 0.89329 0.93150 0.92775 0.90789 0.92213 0.91998 0.92375 0.91135 0.92682 0.76047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.88 37.16 0.33 -3.79 16 2 C 0.28 7.52 2.64 -69.08 -0.18 7.34 16 3 H 0.04 1.12 7.76 -51.93 -0.40 0.72 16 4 C -0.49 -14.43 7.48 -34.44 -0.26 -14.69 16 5 H 0.06 1.78 7.42 -52.49 -0.39 1.39 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -26.56 11.32 55.43 0.63 -25.93 16 8 Si 0.90 22.90 29.54 -169.99 -5.02 17.88 16 9 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 N -0.61 -13.68 2.77 -173.45 -0.48 -14.16 16 13 C 0.12 2.02 5.76 -3.96 -0.02 2.00 16 14 C -0.13 -1.62 2.98 -90.35 -0.27 -1.88 16 15 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.14 -1.27 9.22 37.16 0.34 -0.92 16 17 C 0.12 1.53 6.50 -3.98 -0.03 1.50 16 18 N -0.76 -12.83 5.58 -65.53 -0.37 -13.20 16 19 C 0.70 15.98 7.47 -88.07 -0.66 15.33 16 20 O -0.57 -15.74 13.86 5.28 0.07 -15.66 16 21 H 0.05 1.57 6.07 -51.93 -0.32 1.26 16 22 H 0.00 0.01 8.14 -51.93 -0.42 -0.42 16 23 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.18 7.90 -51.93 -0.41 0.77 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.40 6.12 8.88 -40.82 -0.36 5.76 16 LS Contribution 258.17 15.07 3.89 3.89 Total: -1.00 -33.64 258.17 -6.83 -40.46 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.71 Total: 0.28 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -0.84 Total: 6.43 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.22 Total: -53.29 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.07 Total: -15.66 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.64 -6.83 -40.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260606764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.465 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds