Wall clock time and date at job start Mon Mar 30 2020 02:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46893 * 2 1 4 4 C 1.50699 * 109.47103 * 239.99735 * 2 1 3 5 5 H 1.07996 * 119.99877 * 239.99780 * 4 2 1 6 6 C 1.37871 * 119.99979 * 60.00087 * 4 2 1 7 7 N 1.31516 * 120.00082 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00179 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46914 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47343 * 119.99990 * 8 6 4 11 11 H 1.48496 * 109.47280 * 239.99992 * 8 6 4 12 12 N 1.46503 * 109.46876 * 119.99715 * 2 1 3 13 13 C 1.46381 * 119.32754 * 239.97468 * 12 2 1 14 14 C 1.53282 * 109.20760 * 151.02196 * 13 12 2 15 15 H 1.08999 * 109.58635 * 295.68899 * 14 13 12 16 16 C 1.53002 * 109.67277 * 175.11968 * 14 13 12 17 17 C 1.53243 * 108.54282 * 55.37965 * 14 13 12 18 18 N 1.46384 * 109.20453 * 304.60398 * 17 14 13 19 19 C 1.34129 * 121.34251 * 29.04828 * 18 17 14 20 20 O 1.21593 * 118.69674 * 179.40606 * 19 18 17 21 21 H 1.09006 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47306 * 299.99764 * 1 2 3 23 23 H 1.08995 * 109.47164 * 60.00244 * 1 2 3 24 24 H 0.97008 * 120.00007 * 180.02562 * 7 6 4 25 25 H 1.08991 * 109.52727 * 270.86530 * 13 12 2 26 26 H 1.09003 * 109.52280 * 31.00552 * 13 12 2 27 27 H 1.08994 * 109.46946 * 300.92043 * 16 14 13 28 28 H 1.09002 * 109.46612 * 60.92237 * 16 14 13 29 29 H 1.09000 * 109.46694 * 180.91976 * 16 14 13 30 30 H 1.09002 * 109.52434 * 184.66692 * 17 14 13 31 31 H 1.08995 * 109.52284 * 64.53960 * 17 14 13 32 32 H 0.97006 * 119.32690 * 209.02597 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1484 -2.2858 -3.6036 10 1 1.1678 -1.5868 -4.8164 11 1 3.1472 -0.1859 -4.8160 12 7 2.0183 -0.6906 1.1962 13 6 2.8594 0.0348 2.1498 14 6 2.6520 -0.5497 3.5515 15 1 1.6232 -0.3806 3.8694 16 6 3.6144 0.1182 4.5357 17 6 2.9332 -2.0552 3.4982 18 7 2.0878 -2.6669 2.4716 19 6 1.6861 -1.9748 1.3952 20 8 0.9936 -2.5338 0.5667 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7081 1.1607 -3.4845 25 1 3.9062 -0.0689 1.8646 26 1 2.5843 1.0896 2.1493 27 1 4.6409 -0.0470 4.2087 28 1 3.4122 1.1887 4.5716 29 1 3.4755 -0.3113 5.5278 30 1 2.7106 -2.5019 4.4673 31 1 3.9821 -2.2213 3.2529 32 1 1.8128 -3.5918 2.5717 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260606764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:16 Heat of formation + Delta-G solvation = -52.340524 kcal Electronic energy + Delta-G solvation = -14930.036046 eV Core-core repulsion = 12503.620370 eV Total energy + Delta-G solvation = -2426.415676 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45378 -37.67034 -36.80520 -34.40653 -33.42073 -30.94958 -27.26279 -26.99287 -26.41489 -24.16406 -21.73615 -19.77830 -18.75102 -18.10564 -17.40742 -16.70791 -16.39815 -15.50933 -15.34150 -14.90004 -14.53871 -14.27268 -13.56564 -13.31485 -13.27078 -13.07229 -12.85269 -12.72903 -12.29842 -12.27835 -12.06708 -11.86165 -11.71038 -11.15944 -10.68662 -10.39050 -9.88934 -9.18565 -8.10380 -6.19215 1.35451 1.38746 1.50120 2.09397 2.42244 2.50115 3.14639 3.18244 3.78460 3.88826 4.23273 4.41792 4.59989 4.68955 4.75287 4.78937 4.92631 4.95515 5.11267 5.15100 5.26095 5.31813 5.47193 5.61141 5.80660 5.91795 6.15341 6.28918 6.32382 6.82849 7.30025 7.43457 7.96707 8.93787 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043051 B = 0.009628 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.232629 B = 2907.613240 C = 3050.564828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.287 3.713 3 H 0.033 0.967 4 C -0.507 4.507 5 H 0.033 0.967 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.956 3.044 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.619 5.619 13 C 0.109 3.891 14 C -0.116 4.116 15 H 0.073 0.927 16 C -0.129 4.129 17 C 0.114 3.886 18 N -0.743 5.743 19 C 0.693 3.307 20 O -0.634 6.634 21 H 0.031 0.969 22 H 0.022 0.978 23 H 0.066 0.934 24 H 0.263 0.737 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.231 -1.178 15.242 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.185 3.815 3 H 0.051 0.949 4 C -0.546 4.546 5 H 0.051 0.949 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.354 5.354 13 C -0.014 4.014 14 C -0.136 4.136 15 H 0.091 0.909 16 C -0.187 4.187 17 C -0.009 4.009 18 N -0.402 5.402 19 C 0.394 3.606 20 O -0.515 6.515 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.875 -1.128 14.651 15.825 hybrid contribution -0.070 -0.715 -1.125 1.335 sum 5.804 -1.843 13.526 14.834 Atomic orbital electron populations 1.21943 0.98603 0.99764 0.99442 1.18414 0.91046 0.90964 0.81100 0.94893 1.21439 1.30237 1.11121 0.91807 0.94859 1.25561 0.95672 0.95965 1.01428 1.69969 1.37901 1.24039 1.24020 0.85541 0.78077 0.78487 0.79657 1.20652 1.20781 1.19407 1.47275 1.53400 1.09761 1.24994 1.21834 0.94358 0.96843 0.88335 1.21759 1.01914 0.95488 0.94452 0.90887 1.21617 0.98178 1.00798 0.98117 1.21805 0.94440 0.92751 0.91888 1.44999 1.56751 1.15809 1.22593 1.15799 0.80653 0.82106 0.82073 1.90871 1.45293 1.69102 1.46240 0.94964 0.95940 0.91507 0.92770 0.92306 0.90363 0.91436 0.91570 0.89898 0.86853 0.91406 0.75012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.58 8.88 71.98 0.64 -6.95 16 2 C 0.29 15.52 2.64 44.25 0.12 15.63 16 3 H 0.03 1.82 7.76 -2.39 -0.02 1.81 16 4 C -0.51 -30.60 7.48 25.60 0.19 -30.41 16 5 H 0.03 2.12 7.42 -2.91 -0.02 2.10 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -54.84 11.32 21.45 0.24 -54.60 16 8 Si 0.96 47.51 29.54 68.60 2.03 49.54 16 9 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 N -0.62 -27.80 2.77 -821.29 -2.27 -30.07 16 13 C 0.11 3.52 5.76 86.50 0.50 4.02 16 14 C -0.12 -2.64 2.98 -10.62 -0.03 -2.67 16 15 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 16 C -0.13 -1.83 9.22 71.98 0.66 -1.16 16 17 C 0.11 2.48 6.50 86.48 0.56 3.04 16 18 N -0.74 -24.06 5.58 -479.85 -2.68 -26.74 16 19 C 0.69 31.71 7.47 179.46 1.34 33.05 16 20 O -0.63 -35.78 13.86 -4.01 -0.06 -35.83 16 21 H 0.03 1.87 6.07 -2.38 -0.01 1.86 16 22 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 23 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 24 H 0.26 14.81 8.31 -92.70 -0.77 14.04 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 2.42 7.90 -2.39 -0.02 2.40 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.41 11.90 8.88 -92.70 -0.82 11.07 16 Total: -1.00 -75.04 258.17 1.97 -73.06 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.28 Total: 8.94 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 4.43 Total: 15.69 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -4.71 Total: -111.41 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -0.06 Total: -35.83 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -75.04 1.97 -73.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260606764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.722 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds