Wall clock time and date at job start Mon Mar 30 2020 02:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46954 * 2 1 4 4 C 1.50703 * 109.47424 * 119.99751 * 2 1 3 5 5 H 1.08003 * 119.99763 * 26.33482 * 4 2 1 6 6 C 1.37870 * 120.00156 * 206.33940 * 4 2 1 7 7 N 1.31510 * 120.00260 * 354.08360 * 6 4 2 8 8 Si 1.86810 * 119.99983 * 174.08894 * 6 4 2 9 9 H 1.48497 * 109.46770 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47061 * 119.99644 * 8 6 4 11 11 H 1.48495 * 109.47227 * 240.00002 * 8 6 4 12 12 N 1.46501 * 109.47210 * 239.99950 * 2 1 3 13 13 C 1.46382 * 119.32836 * 120.00369 * 12 2 1 14 14 C 1.53239 * 109.15380 * 150.91644 * 13 12 2 15 15 H 1.08999 * 109.62096 * 295.75192 * 14 13 12 16 16 C 1.53001 * 109.61875 * 175.19728 * 14 13 12 17 17 C 1.53237 * 108.56353 * 55.47646 * 14 13 12 18 18 N 1.46380 * 109.15631 * 304.52111 * 17 14 13 19 19 C 1.34129 * 119.33107 * 299.72307 * 12 2 1 20 20 O 1.21590 * 118.69550 * 0.57626 * 19 12 2 21 21 H 1.08999 * 109.46936 * 306.50624 * 1 2 3 22 22 H 1.09001 * 109.47052 * 66.51203 * 1 2 3 23 23 H 1.08998 * 109.46822 * 186.50648 * 1 2 3 24 24 H 0.96995 * 119.99747 * 3.45105 * 7 6 4 25 25 H 1.09005 * 109.51787 * 270.81801 * 13 12 2 26 26 H 1.08997 * 109.52327 * 31.00786 * 13 12 2 27 27 H 1.08997 * 109.47010 * 60.00437 * 16 14 13 28 28 H 1.08999 * 109.46680 * 180.02562 * 16 14 13 29 29 H 1.08994 * 109.47316 * 299.99646 * 16 14 13 30 30 H 1.09003 * 109.52407 * 64.42025 * 17 14 13 31 31 H 1.08999 * 109.52598 * 184.55043 * 17 14 13 32 32 H 0.96992 * 119.33319 * 209.03935 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 1.4221 -1.4640 1.7060 6 6 3.2711 -0.3982 1.7493 7 7 4.0625 0.4330 1.1072 8 14 3.8253 -1.1559 3.3644 9 1 2.7592 -2.0502 3.8830 10 1 5.0661 -1.9409 3.1428 11 1 4.0906 -0.0787 4.3513 12 7 2.0184 -0.6906 -1.1962 13 6 2.8590 0.0349 -2.1500 14 6 3.7978 -0.9554 -2.8474 15 1 4.4787 -1.3912 -2.1163 16 6 4.5975 -0.2291 -3.9309 17 6 2.9521 -2.0619 -3.4865 18 7 2.1064 -2.6736 -2.4602 19 6 1.6908 -1.9764 -1.3922 20 8 0.9853 -2.5308 -0.5717 21 1 -0.3633 0.6114 0.8260 22 1 -0.3633 0.4096 -0.9425 23 1 -0.3633 -1.0210 0.1165 24 1 3.7555 0.8651 0.2949 25 1 2.2286 0.5240 -2.8926 26 1 3.4478 0.7839 -1.6204 27 1 5.1854 0.5679 -3.4758 28 1 5.2639 -0.9357 -4.4256 29 1 3.9125 0.1975 -4.6635 30 1 2.3244 -1.6349 -4.2687 31 1 3.6077 -2.8183 -3.9180 32 1 1.8441 -3.6028 -2.5525 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260606777.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:22 Heat of formation + Delta-G solvation = -60.084659 kcal Electronic energy + Delta-G solvation = -15187.637508 eV Core-core repulsion = 12760.886022 eV Total energy + Delta-G solvation = -2426.751486 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.44715 -37.66788 -37.01669 -34.19407 -33.43931 -31.41529 -27.07339 -26.78329 -26.25779 -24.28154 -22.04052 -19.85415 -19.05799 -18.25024 -17.45692 -16.50785 -15.83418 -15.65832 -15.46991 -15.11112 -14.83672 -14.40786 -13.91237 -13.37340 -13.27176 -13.10512 -12.76388 -12.63860 -12.34846 -12.09339 -11.96548 -11.90369 -11.64262 -10.90727 -10.71240 -10.48762 -9.90699 -9.07277 -8.60885 -6.31100 1.48304 1.54266 1.76166 2.09447 2.49418 2.55338 3.04537 3.38119 3.74633 3.83217 4.17475 4.34214 4.48601 4.56336 4.59708 4.69348 4.76365 4.78485 4.83486 5.00507 5.08664 5.24357 5.33699 5.43069 5.71968 6.08142 6.20332 6.29082 6.32031 6.67152 7.30878 7.45423 7.97232 8.77420 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029593 B = 0.012759 C = 0.011177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.950962 B = 2194.084473 C = 2504.636064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.253 3.747 3 H 0.037 0.963 4 C -0.584 4.584 5 H 0.028 0.972 6 C -0.019 4.019 7 N -0.924 5.924 8 Si 1.112 2.888 9 H -0.288 1.288 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.613 5.613 13 C 0.111 3.889 14 C -0.119 4.119 15 H 0.047 0.953 16 C -0.127 4.127 17 C 0.120 3.880 18 N -0.746 5.746 19 C 0.696 3.304 20 O -0.640 6.640 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.263 0.737 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -0.908 -12.018 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.153 3.847 3 H 0.055 0.945 4 C -0.623 4.623 5 H 0.046 0.954 6 C -0.220 4.220 7 N -0.562 5.562 8 Si 0.936 3.064 9 H -0.214 1.214 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.349 5.349 13 C -0.012 4.012 14 C -0.139 4.139 15 H 0.066 0.934 16 C -0.185 4.185 17 C -0.003 4.003 18 N -0.404 5.404 19 C 0.397 3.603 20 O -0.522 6.522 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.283 -1.017 -10.523 10.815 hybrid contribution -1.331 -0.253 -0.849 1.599 sum 0.951 -1.270 -11.372 11.482 Atomic orbital electron populations 1.21920 0.96825 1.01067 0.99447 1.18735 0.91518 0.91696 0.82755 0.94521 1.22378 1.05297 1.23244 1.11417 0.95361 1.27050 0.93380 0.96177 1.05366 1.70883 1.36983 1.29110 1.19192 0.82970 0.75271 0.75769 0.72373 1.21387 1.20946 1.19406 1.48112 1.52318 1.09603 1.24870 1.21732 0.92721 0.95198 0.91594 1.21691 0.96854 0.96636 0.98737 0.93392 1.21596 0.99786 1.00373 0.96708 1.21736 0.92898 0.96194 0.89479 1.45017 1.56275 1.15263 1.23883 1.15788 0.80391 0.82177 0.81895 1.90782 1.45197 1.69544 1.46684 0.92776 0.93860 0.93706 0.92508 0.91178 0.92421 0.92638 0.90112 0.90339 0.90220 0.87509 0.75169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.44 8.99 71.98 0.65 -5.79 16 2 C 0.25 13.35 2.28 44.25 0.10 13.45 16 3 H 0.04 1.98 6.54 -2.39 -0.02 1.96 16 4 C -0.58 -34.99 7.21 25.60 0.18 -34.80 16 5 H 0.03 1.83 7.59 -2.91 -0.02 1.81 16 6 C -0.02 -1.12 5.45 84.65 0.46 -0.66 16 7 N -0.92 -54.56 13.63 21.44 0.29 -54.27 16 8 Si 1.11 53.35 29.91 68.60 2.05 55.40 16 9 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.61 -28.81 2.77 -821.38 -2.27 -31.08 16 13 C 0.11 4.12 5.67 86.48 0.49 4.61 16 14 C -0.12 -3.57 2.97 -10.63 -0.03 -3.60 16 15 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 16 C -0.13 -2.57 9.22 71.98 0.66 -1.90 16 17 C 0.12 3.05 6.50 86.48 0.56 3.61 16 18 N -0.75 -26.25 5.59 -479.86 -2.68 -28.93 16 19 C 0.70 33.20 7.61 179.46 1.37 34.57 16 20 O -0.64 -36.19 13.89 -4.00 -0.06 -36.24 16 21 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 22 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.04 2.35 6.25 -2.39 -0.01 2.34 16 24 H 0.26 15.20 5.02 -92.71 -0.47 14.73 16 25 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.06 2.37 6.27 -2.39 -0.01 2.35 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.41 12.83 8.88 -92.71 -0.82 12.01 16 Total: -1.00 -74.06 256.82 2.37 -71.69 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.59 Total: 13.94 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 4.44 Total: 9.48 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.66 Total: -114.28 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.06 Total: -36.24 kcal Atomic # 14 Polarization: 53.35 SS G_CDS: 2.05 Total: 55.40 kcal Total: -74.06 2.37 -71.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260606777.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.608 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds