Wall clock time and date at job start Mon Mar 30 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47740 * 2 1 4 4 C 1.50703 * 109.47013 * 120.00450 * 2 1 3 5 5 H 1.08000 * 120.00176 * 119.99968 * 4 2 1 6 6 C 1.37876 * 119.99950 * 299.99426 * 4 2 1 7 7 N 1.31517 * 120.00103 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00099 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46614 * 90.00291 * 8 6 4 10 10 H 1.48493 * 109.46883 * 210.00165 * 8 6 4 11 11 H 1.48494 * 109.47137 * 330.00632 * 8 6 4 12 12 N 1.46505 * 109.47334 * 239.99969 * 2 1 3 13 13 C 1.46385 * 119.32871 * 120.00083 * 12 2 1 14 14 C 1.53241 * 109.15084 * 209.08721 * 13 12 2 15 15 H 1.08999 * 109.62774 * 64.24248 * 14 13 12 16 16 C 1.53000 * 109.62019 * 184.79993 * 14 13 12 17 17 C 1.53246 * 108.56389 * 304.51997 * 14 13 12 18 18 N 1.46382 * 109.15074 * 55.48005 * 17 14 13 19 19 C 1.34131 * 121.34474 * 330.94287 * 18 17 14 20 20 O 1.21590 * 118.69878 * 180.54887 * 19 18 17 21 21 H 1.09005 * 109.47121 * 59.99574 * 1 2 3 22 22 H 1.08999 * 109.47423 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47161 * 300.00096 * 1 2 3 24 24 H 0.96996 * 120.00065 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.52147 * 89.18683 * 13 12 2 26 26 H 1.08997 * 109.57675 * 329.02132 * 13 12 2 27 27 H 1.09001 * 109.47155 * 179.06921 * 16 14 13 28 28 H 1.08996 * 109.47199 * 299.07322 * 16 14 13 29 29 H 1.08999 * 109.47048 * 59.07034 * 16 14 13 30 30 H 1.08993 * 109.52370 * 175.38594 * 17 14 13 31 31 H 1.09003 * 109.52371 * 295.58245 * 17 14 13 32 32 H 0.96999 * 119.32254 * 150.94164 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3213 -1.1206 4.0079 9 1 3.6296 -0.5462 4.4123 10 1 1.3431 -0.9494 5.1119 11 1 2.4857 -2.5664 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 2.8590 0.0349 -2.1500 14 6 2.6487 -0.5491 -3.5511 15 1 1.6193 -0.3802 -3.8674 16 6 3.6092 0.1202 -4.5362 17 6 2.9308 -2.0545 -3.4996 18 7 2.0862 -2.6665 -2.4725 19 6 1.6856 -1.9748 -1.3954 20 8 0.9931 -2.5337 -0.5669 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7082 1.1607 3.4845 25 1 3.9060 -0.0692 -1.8654 26 1 2.5845 1.0897 -2.1500 27 1 3.4691 -0.3085 -5.5285 28 1 3.4065 1.1906 -4.5709 29 1 4.6364 -0.0447 -4.2109 30 1 2.7069 -2.5004 -4.4686 31 1 3.9799 -2.2203 -3.2549 32 1 1.8107 -3.5911 -2.5729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260606783.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:25 Heat of formation + Delta-G solvation = -27.897697 kcal Electronic energy + Delta-G solvation = -14929.504715 eV Core-core repulsion = 12504.148959 eV Total energy + Delta-G solvation = -2425.355755 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86449 -36.21451 -34.94828 -32.50422 -31.97312 -28.99529 -25.94190 -25.13546 -24.90170 -22.44935 -20.18531 -18.30148 -16.91532 -16.46944 -15.66655 -15.03037 -14.67363 -14.03267 -13.62541 -13.42589 -13.02376 -12.47322 -12.36623 -12.12198 -11.78382 -11.21138 -10.96019 -10.81907 -10.72221 -10.70323 -10.30018 -10.17837 -9.87520 -9.15829 -8.69166 -8.40197 -8.21365 -7.40695 -5.88463 -3.89748 3.39680 3.45842 3.53351 3.63984 4.16544 4.45407 4.61855 4.90249 4.96380 5.21264 5.42921 5.48654 5.50936 5.68912 5.74625 5.92723 6.03942 6.10555 6.39409 6.71201 7.00660 7.18837 7.31076 7.50487 7.76144 7.91706 8.04590 8.24851 8.42767 8.96683 9.09339 9.60286 9.77410 11.17599 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043071 B = 0.009629 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.929553 B = 2907.300484 C = 3050.792801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.285 3.715 3 H 0.042 0.958 4 C -0.491 4.491 5 H 0.057 0.943 6 C 0.057 3.943 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.611 5.611 13 C 0.120 3.880 14 C -0.126 4.126 15 H 0.080 0.920 16 C -0.138 4.138 17 C 0.121 3.879 18 N -0.755 5.755 19 C 0.702 3.298 20 O -0.575 6.575 21 H 0.000 1.000 22 H 0.055 0.945 23 H 0.088 0.912 24 H 0.259 0.741 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 -1.128 -13.489 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.184 3.816 3 H 0.059 0.941 4 C -0.530 4.530 5 H 0.075 0.925 6 C -0.143 4.143 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.348 5.348 13 C -0.004 4.004 14 C -0.146 4.146 15 H 0.098 0.902 16 C -0.196 4.196 17 C -0.004 4.004 18 N -0.415 5.415 19 C 0.403 3.597 20 O -0.451 6.451 21 H 0.019 0.981 22 H 0.074 0.926 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 4.536 -1.089 -12.821 13.644 hybrid contribution 0.321 -0.735 0.648 1.031 sum 4.858 -1.824 -12.174 13.233 Atomic orbital electron populations 1.22165 0.98138 1.01462 0.99548 1.18730 0.91409 0.91410 0.80018 0.94051 1.21294 1.30052 1.11679 0.90005 0.92501 1.24841 0.95420 0.95204 0.98813 1.69873 1.37515 1.23379 1.23310 0.86497 0.78176 0.80250 0.82501 1.20989 1.21293 1.19979 1.47412 1.52842 1.09425 1.25084 1.21466 0.95190 0.96719 0.87048 1.21773 1.01104 0.95249 0.96432 0.90180 1.21656 0.99041 1.00744 0.98190 1.21412 0.94642 0.92902 0.91468 1.45140 1.57313 1.15693 1.23401 1.15527 0.80900 0.81994 0.81292 1.90923 1.42670 1.67813 1.43703 0.98074 0.92642 0.89332 0.93093 0.92761 0.90794 0.92380 0.92001 0.92216 0.91127 0.92674 0.76054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 8.88 37.15 0.33 -3.79 16 2 C 0.28 7.53 2.64 -69.08 -0.18 7.35 16 3 H 0.04 1.12 7.76 -51.93 -0.40 0.72 16 4 C -0.49 -14.46 7.48 -34.44 -0.26 -14.71 16 5 H 0.06 1.75 7.42 -52.49 -0.39 1.37 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -26.57 11.32 55.43 0.63 -25.94 16 8 Si 0.90 22.88 29.54 -169.99 -5.02 17.86 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 12 N -0.61 -13.69 2.77 -173.47 -0.48 -14.17 16 13 C 0.12 2.02 5.76 -3.98 -0.02 2.00 16 14 C -0.13 -1.62 2.97 -90.37 -0.27 -1.89 16 15 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 16 C -0.14 -1.27 9.22 37.16 0.34 -0.93 16 17 C 0.12 1.53 6.50 -3.98 -0.03 1.50 16 18 N -0.76 -12.83 5.58 -65.53 -0.37 -13.20 16 19 C 0.70 15.99 7.47 -88.06 -0.66 15.33 16 20 O -0.57 -15.75 13.86 5.29 0.07 -15.68 16 21 H 0.00 0.00 8.14 -51.93 -0.42 -0.42 16 22 H 0.05 1.57 6.07 -51.93 -0.32 1.26 16 23 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.18 7.90 -51.93 -0.41 0.77 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.40 6.12 8.88 -40.82 -0.36 5.76 16 LS Contribution 258.17 15.07 3.89 3.89 Total: -1.00 -33.64 258.17 -6.83 -40.47 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.71 Total: 0.33 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -0.84 Total: 6.43 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.22 Total: -53.31 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.07 Total: -15.68 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.64 -6.83 -40.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260606783.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.573 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds