Wall clock time and date at job start Mon Mar 30 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47740 * 2 1 4 4 C 1.50703 * 109.47013 * 120.00450 * 2 1 3 5 5 H 1.08000 * 120.00176 * 119.99968 * 4 2 1 6 6 C 1.37876 * 119.99950 * 299.99426 * 4 2 1 7 7 N 1.31517 * 120.00103 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00099 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46614 * 90.00291 * 8 6 4 10 10 H 1.48493 * 109.46883 * 210.00165 * 8 6 4 11 11 H 1.48494 * 109.47137 * 330.00632 * 8 6 4 12 12 N 1.46505 * 109.47334 * 239.99969 * 2 1 3 13 13 C 1.46385 * 119.32871 * 120.00083 * 12 2 1 14 14 C 1.53241 * 109.15084 * 209.08721 * 13 12 2 15 15 H 1.08999 * 109.62774 * 64.24248 * 14 13 12 16 16 C 1.53000 * 109.62019 * 184.79993 * 14 13 12 17 17 C 1.53246 * 108.56389 * 304.51997 * 14 13 12 18 18 N 1.46382 * 109.15074 * 55.48005 * 17 14 13 19 19 C 1.34131 * 121.34474 * 330.94287 * 18 17 14 20 20 O 1.21590 * 118.69878 * 180.54887 * 19 18 17 21 21 H 1.09005 * 109.47121 * 59.99574 * 1 2 3 22 22 H 1.08999 * 109.47423 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47161 * 300.00096 * 1 2 3 24 24 H 0.96996 * 120.00065 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.52147 * 89.18683 * 13 12 2 26 26 H 1.08997 * 109.57675 * 329.02132 * 13 12 2 27 27 H 1.09001 * 109.47155 * 179.06921 * 16 14 13 28 28 H 1.08996 * 109.47199 * 299.07322 * 16 14 13 29 29 H 1.08999 * 109.47048 * 59.07034 * 16 14 13 30 30 H 1.08993 * 109.52370 * 175.38594 * 17 14 13 31 31 H 1.09003 * 109.52371 * 295.58245 * 17 14 13 32 32 H 0.96999 * 119.32254 * 150.94164 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6035 8 14 2.3213 -1.1206 4.0079 9 1 3.6296 -0.5462 4.4123 10 1 1.3431 -0.9494 5.1119 11 1 2.4857 -2.5664 3.7119 12 7 2.0183 -0.6906 -1.1962 13 6 2.8590 0.0349 -2.1500 14 6 2.6487 -0.5491 -3.5511 15 1 1.6193 -0.3802 -3.8674 16 6 3.6092 0.1202 -4.5362 17 6 2.9308 -2.0545 -3.4996 18 7 2.0862 -2.6665 -2.4725 19 6 1.6856 -1.9748 -1.3954 20 8 0.9931 -2.5337 -0.5669 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.7082 1.1607 3.4845 25 1 3.9060 -0.0692 -1.8654 26 1 2.5845 1.0897 -2.1500 27 1 3.4691 -0.3085 -5.5285 28 1 3.4065 1.1906 -4.5709 29 1 4.6364 -0.0447 -4.2109 30 1 2.7069 -2.5004 -4.4686 31 1 3.9799 -2.2203 -3.2549 32 1 1.8107 -3.5911 -2.5729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260606783.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:25 Heat of formation + Delta-G solvation = -52.255701 kcal Electronic energy + Delta-G solvation = -14930.560957 eV Core-core repulsion = 12504.148959 eV Total energy + Delta-G solvation = -2426.411997 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.45536 -37.67333 -36.80420 -34.40570 -33.42117 -30.94911 -27.26034 -26.99111 -26.41470 -24.16319 -21.73467 -19.77900 -18.74944 -18.10512 -17.40447 -16.70798 -16.39650 -15.50960 -15.34538 -14.89896 -14.53840 -14.26993 -13.56105 -13.31355 -13.27150 -13.07142 -12.85475 -12.72626 -12.30965 -12.27425 -12.05949 -11.86196 -11.71164 -11.16706 -10.68762 -10.38602 -9.88985 -9.18571 -8.10163 -6.19046 1.35608 1.39094 1.49924 2.09391 2.42364 2.50154 3.14856 3.18405 3.78387 3.89010 4.23227 4.41782 4.60033 4.69080 4.75319 4.78918 4.92623 4.95486 5.11303 5.15168 5.26140 5.31838 5.47192 5.61055 5.80575 5.91866 6.15436 6.28992 6.32386 6.82710 7.30056 7.43540 7.96759 8.93847 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043071 B = 0.009629 C = 0.009176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.929553 B = 2907.300484 C = 3050.792801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.287 3.713 3 H 0.033 0.967 4 C -0.508 4.508 5 H 0.033 0.967 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.267 1.267 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.619 5.619 13 C 0.109 3.891 14 C -0.117 4.117 15 H 0.073 0.927 16 C -0.129 4.129 17 C 0.115 3.885 18 N -0.743 5.743 19 C 0.693 3.307 20 O -0.634 6.634 21 H 0.022 0.978 22 H 0.031 0.969 23 H 0.066 0.934 24 H 0.263 0.737 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 -1.153 -15.228 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.185 3.815 3 H 0.051 0.949 4 C -0.547 4.547 5 H 0.051 0.949 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.212 1.212 12 N -0.354 5.354 13 C -0.014 4.014 14 C -0.136 4.136 15 H 0.091 0.909 16 C -0.187 4.187 17 C -0.009 4.009 18 N -0.402 5.402 19 C 0.394 3.606 20 O -0.515 6.515 21 H 0.041 0.959 22 H 0.050 0.950 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.882 -1.101 -14.634 15.810 hybrid contribution -0.063 -0.721 1.119 1.333 sum 5.819 -1.823 -13.515 14.827 Atomic orbital electron populations 1.21941 0.98611 0.99758 0.99442 1.18408 0.91040 0.90955 0.81095 0.94902 1.21413 1.30327 1.11159 0.91817 0.94867 1.25561 0.95648 0.95967 1.01419 1.69958 1.37813 1.24052 1.24089 0.85603 0.78546 0.78371 0.79339 1.19207 1.20306 1.21192 1.47278 1.53409 1.09758 1.24987 1.21830 0.94371 0.96852 0.88310 1.21755 1.01905 0.95505 0.94466 0.90892 1.21618 0.98205 1.00784 0.98111 1.21810 0.94459 0.92732 0.91872 1.44999 1.56801 1.15837 1.22519 1.15799 0.80650 0.82105 0.82072 1.90872 1.45283 1.69096 1.46263 0.95942 0.94971 0.91505 0.92760 0.92275 0.90366 0.89906 0.91578 0.91429 0.86849 0.91385 0.75024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.59 8.88 71.98 0.64 -6.95 16 2 C 0.29 15.53 2.64 44.24 0.12 15.65 16 3 H 0.03 1.82 7.76 -2.39 -0.02 1.80 16 4 C -0.51 -30.67 7.48 25.60 0.19 -30.48 16 5 H 0.03 2.11 7.42 -2.91 -0.02 2.09 16 6 C 0.01 0.72 5.30 84.65 0.45 1.16 16 7 N -0.92 -54.86 11.32 21.45 0.24 -54.61 16 8 Si 0.96 47.46 29.54 68.60 2.03 49.49 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 12 N -0.62 -27.80 2.77 -821.36 -2.27 -30.07 16 13 C 0.11 3.52 5.76 86.48 0.50 4.02 16 14 C -0.12 -2.64 2.97 -10.63 -0.03 -2.67 16 15 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 16 C -0.13 -1.83 9.22 71.98 0.66 -1.16 16 17 C 0.11 2.48 6.50 86.48 0.56 3.04 16 18 N -0.74 -24.07 5.58 -479.85 -2.68 -26.75 16 19 C 0.69 31.73 7.47 179.45 1.34 33.07 16 20 O -0.63 -35.85 13.86 -4.00 -0.06 -35.91 16 21 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 22 H 0.03 1.87 6.07 -2.39 -0.01 1.86 16 23 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 24 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.08 2.42 7.90 -2.39 -0.02 2.40 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.41 11.91 8.88 -92.71 -0.82 11.08 16 Total: -1.00 -75.10 258.17 1.97 -73.13 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.28 Total: 9.05 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 4.43 Total: 15.68 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.71 Total: -111.44 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.06 Total: -35.91 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -75.10 1.97 -73.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260606783.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.872 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds