Wall clock time and date at job start Mon Mar 30 2020 02:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.60102 * 2 1 4 4 C 1.51399 * 109.59887 * 120.31386 * 2 1 3 5 5 O 1.21294 * 119.88318 * 10.83563 * 4 2 1 6 6 N 1.33611 * 120.23945 * 191.11070 * 4 2 1 7 7 C 1.37096 * 120.07929 * 179.45364 * 6 4 2 8 8 H 1.07997 * 119.99796 * 333.66861 * 7 6 4 9 9 C 1.38955 * 119.99995 * 153.67184 * 7 6 4 10 10 N 1.31407 * 119.99971 * 341.81711 * 9 7 6 11 11 Si 1.86793 * 120.00029 * 161.81747 * 9 7 6 12 12 H 1.48497 * 109.47060 * 89.99778 * 11 9 7 13 13 H 1.48495 * 109.47424 * 210.00050 * 11 9 7 14 14 H 1.48506 * 109.47316 * 330.00308 * 11 9 7 15 15 C 1.47250 * 119.83914 * 359.47416 * 6 4 2 16 16 C 1.53107 * 108.40057 * 290.01201 * 15 6 4 17 17 C 1.51693 * 110.75680 * 85.59564 * 16 15 6 18 18 N 1.45747 * 113.93668 * 293.22725 * 17 16 15 19 19 C 1.46899 * 111.00235 * 302.69037 * 18 17 16 20 20 H 1.08997 * 109.47430 * 299.68775 * 1 2 3 21 21 H 1.09005 * 109.46973 * 59.68255 * 1 2 3 22 22 H 1.08997 * 109.47265 * 179.68303 * 1 2 3 23 23 H 0.96998 * 119.99820 * 179.97438 * 10 9 7 24 24 H 1.09007 * 109.67531 * 170.29037 * 15 6 4 25 25 H 1.08995 * 109.71486 * 49.76433 * 15 6 4 26 26 H 1.09001 * 109.22201 * 325.26927 * 16 15 6 27 27 H 1.09002 * 109.22207 * 205.92545 * 16 15 6 28 28 H 1.09001 * 108.59012 * 172.07266 * 17 16 15 29 29 H 1.09001 * 108.47120 * 54.29891 * 17 16 15 30 30 H 1.09003 * 109.47279 * 185.81652 * 19 18 17 31 31 H 1.08995 * 109.47685 * 305.82344 * 19 18 17 32 32 H 1.09007 * 109.46750 * 65.82138 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0378 -0.7199 1.2313 5 8 1.2675 -1.3528 1.9220 6 7 3.3306 -0.6561 1.5628 7 6 3.7849 -1.3000 2.6846 8 1 3.1128 -1.4877 3.5089 9 6 5.1100 -1.7109 2.7612 10 7 5.8296 -1.8160 1.6667 11 14 5.8686 -2.1140 4.4199 12 1 5.6641 -3.5537 4.7209 13 1 7.3232 -1.8174 4.3843 14 1 5.2213 -1.2914 5.4733 15 6 4.2661 0.1080 0.7205 16 6 4.4454 -0.6397 -0.6035 17 6 3.3545 -0.2604 -1.5870 18 7 2.0228 -0.7019 -1.1923 19 6 1.9866 -2.1577 -0.9988 20 1 -0.3634 0.5089 0.8927 21 1 -0.3633 0.5188 -0.8872 22 1 -0.3633 -1.0276 -0.0057 23 1 6.7548 -2.1026 1.7202 24 1 5.2279 0.1949 1.2261 25 1 3.8610 1.1016 0.5291 26 1 4.4039 -1.7130 -0.4180 27 1 5.4164 -0.3872 -1.0296 28 1 3.5929 -0.6986 -2.5562 29 1 3.3446 0.8246 -1.6903 30 1 0.9611 -2.4732 -0.8062 31 1 2.3566 -2.6529 -1.8964 32 1 2.6151 -2.4271 -0.1499 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260691811.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:47 Heat of formation + Delta-G solvation = -17.679755 kcal Electronic energy + Delta-G solvation = -15490.366869 eV Core-core repulsion = 13065.454198 eV Total energy + Delta-G solvation = -2424.912672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77258 -36.15461 -35.16120 -31.85025 -31.12609 -29.48979 -26.20972 -25.60489 -23.71898 -22.40812 -19.90514 -18.20461 -16.85646 -16.32802 -15.45256 -14.84581 -14.79582 -14.04334 -13.25054 -12.92956 -12.73698 -12.53445 -11.98271 -11.74923 -11.56451 -11.31122 -11.16034 -11.03783 -10.69816 -10.61580 -10.52553 -10.30903 -10.17207 -9.95207 -8.98021 -8.59188 -7.63334 -7.55615 -6.36096 -3.91511 3.14071 3.23238 3.28962 3.84211 4.11592 4.61044 4.90306 5.09407 5.43758 5.52875 5.64841 5.88388 5.93090 6.05923 6.15161 6.23893 6.32829 6.37117 6.44465 6.50151 6.66311 6.67166 6.79750 7.08822 7.33751 7.51273 7.56968 7.67597 8.17343 8.48399 9.18477 9.42566 10.01719 10.67828 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040720 B = 0.012611 C = 0.010791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.465496 B = 2219.790435 C = 2594.126989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.067 3.933 3 H 0.081 0.919 4 C 0.427 3.573 5 O -0.589 6.589 6 N -0.440 5.440 7 C -0.310 4.310 8 H 0.095 0.905 9 C 0.034 3.966 10 N -0.872 5.872 11 Si 0.920 3.080 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.127 3.873 16 C -0.151 4.151 17 C 0.048 3.952 18 N -0.524 5.524 19 C 0.018 3.982 20 H 0.055 0.945 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.266 0.734 24 H 0.098 0.902 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 3.930 -5.691 7.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.045 4.045 3 H 0.099 0.901 4 C 0.214 3.786 5 O -0.473 6.473 6 N -0.158 5.158 7 C -0.437 4.437 8 H 0.113 0.887 9 C -0.170 4.170 10 N -0.511 5.511 11 Si 0.747 3.253 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.195 1.195 15 C 0.003 3.997 16 C -0.191 4.191 17 C -0.080 4.080 18 N -0.248 5.248 19 C -0.130 4.130 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.116 0.884 25 H 0.052 0.948 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.691 3.689 -5.764 7.049 hybrid contribution 1.284 -0.422 1.310 1.882 sum -0.407 3.267 -4.454 5.539 Atomic orbital electron populations 1.21437 0.93025 1.02437 1.00449 1.21991 0.96855 0.97853 0.87794 0.90072 1.20795 0.83928 0.85875 0.88042 1.90503 1.55815 1.46567 1.54430 1.43698 1.05848 1.43164 1.23126 1.19586 0.94992 1.35015 0.94149 0.88717 1.25288 0.97237 0.96135 0.98333 1.70024 1.09501 1.44913 1.26622 0.86037 0.77936 0.78924 0.82429 1.20392 1.20858 1.19511 1.21515 0.95877 0.91073 0.91236 1.22110 0.97604 1.03930 0.95447 1.21892 0.87695 0.99983 0.98432 1.61975 1.23616 1.05963 1.33270 1.22419 1.02081 0.87520 1.00942 0.92557 0.92695 0.92190 0.92343 0.88379 0.94808 0.89418 0.91905 0.91669 0.91995 0.91797 0.92325 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.75 37.16 0.33 -1.73 16 2 C 0.07 1.32 2.45 -68.54 -0.17 1.16 16 3 H 0.08 1.50 6.68 -51.93 -0.35 1.16 16 4 C 0.43 10.61 4.57 -11.16 -0.05 10.56 16 5 O -0.59 -16.66 15.70 5.55 0.09 -16.57 16 6 N -0.44 -11.22 2.45 -114.22 -0.28 -11.50 16 7 C -0.31 -8.62 9.16 -14.93 -0.14 -8.75 16 8 H 0.10 2.80 7.51 -52.49 -0.39 2.41 16 9 C 0.03 0.88 4.88 -17.47 -0.09 0.79 16 10 N -0.87 -22.49 10.02 55.50 0.56 -21.93 16 11 Si 0.92 20.58 29.59 -169.99 -5.03 15.55 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 C 0.13 2.79 4.98 -3.58 -0.02 2.77 16 16 C -0.15 -3.00 4.70 -27.34 -0.13 -3.13 16 17 C 0.05 0.83 5.22 -5.11 -0.03 0.80 16 18 N -0.52 -9.74 4.74 -237.69 -1.13 -10.87 16 19 C 0.02 0.36 8.28 60.06 0.50 0.86 16 20 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 1.14 7.02 -51.93 -0.36 0.77 16 23 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 24 H 0.10 2.33 6.11 -51.92 -0.32 2.01 16 25 H 0.03 0.66 6.76 -51.93 -0.35 0.31 16 26 H 0.09 2.05 5.91 -51.93 -0.31 1.75 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.96 7.78 -51.93 -0.40 0.56 16 30 H 0.06 1.24 7.15 -51.93 -0.37 0.87 16 31 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 32 H 0.05 1.22 5.18 -51.93 -0.27 0.95 16 LS Contribution 245.92 15.07 3.71 3.71 Total: -1.00 -29.48 245.92 -6.25 -35.73 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.37 Total: 2.57 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 0.21 Total: 3.32 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.85 Total: -44.31 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.57 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.48 -6.25 -35.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260691811.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.048 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds