Wall clock time and date at job start Mon Mar 30 2020 02:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.60102 * 2 1 4 4 C 1.51399 * 109.59887 * 120.31386 * 2 1 3 5 5 O 1.21294 * 119.88318 * 10.83563 * 4 2 1 6 6 N 1.33611 * 120.23945 * 191.11070 * 4 2 1 7 7 C 1.37096 * 120.07929 * 179.45364 * 6 4 2 8 8 H 1.07997 * 119.99796 * 333.66861 * 7 6 4 9 9 C 1.38955 * 119.99995 * 153.67184 * 7 6 4 10 10 N 1.31407 * 119.99971 * 341.81711 * 9 7 6 11 11 Si 1.86793 * 120.00029 * 161.81747 * 9 7 6 12 12 H 1.48497 * 109.47060 * 89.99778 * 11 9 7 13 13 H 1.48495 * 109.47424 * 210.00050 * 11 9 7 14 14 H 1.48506 * 109.47316 * 330.00308 * 11 9 7 15 15 C 1.47250 * 119.83914 * 359.47416 * 6 4 2 16 16 C 1.53107 * 108.40057 * 290.01201 * 15 6 4 17 17 C 1.51693 * 110.75680 * 85.59564 * 16 15 6 18 18 N 1.45747 * 113.93668 * 293.22725 * 17 16 15 19 19 C 1.46899 * 111.00235 * 302.69037 * 18 17 16 20 20 H 1.08997 * 109.47430 * 299.68775 * 1 2 3 21 21 H 1.09005 * 109.46973 * 59.68255 * 1 2 3 22 22 H 1.08997 * 109.47265 * 179.68303 * 1 2 3 23 23 H 0.96998 * 119.99820 * 179.97438 * 10 9 7 24 24 H 1.09007 * 109.67531 * 170.29037 * 15 6 4 25 25 H 1.08995 * 109.71486 * 49.76433 * 15 6 4 26 26 H 1.09001 * 109.22201 * 325.26927 * 16 15 6 27 27 H 1.09002 * 109.22207 * 205.92545 * 16 15 6 28 28 H 1.09001 * 108.59012 * 172.07266 * 17 16 15 29 29 H 1.09001 * 108.47120 * 54.29891 * 17 16 15 30 30 H 1.09003 * 109.47279 * 185.81652 * 19 18 17 31 31 H 1.08995 * 109.47685 * 305.82344 * 19 18 17 32 32 H 1.09007 * 109.46750 * 65.82138 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0269 0.0000 4 6 2.0378 -0.7199 1.2313 5 8 1.2675 -1.3528 1.9220 6 7 3.3306 -0.6561 1.5628 7 6 3.7849 -1.3000 2.6846 8 1 3.1128 -1.4877 3.5089 9 6 5.1100 -1.7109 2.7612 10 7 5.8296 -1.8160 1.6667 11 14 5.8686 -2.1140 4.4199 12 1 5.6641 -3.5537 4.7209 13 1 7.3232 -1.8174 4.3843 14 1 5.2213 -1.2914 5.4733 15 6 4.2661 0.1080 0.7205 16 6 4.4454 -0.6397 -0.6035 17 6 3.3545 -0.2604 -1.5870 18 7 2.0228 -0.7019 -1.1923 19 6 1.9866 -2.1577 -0.9988 20 1 -0.3634 0.5089 0.8927 21 1 -0.3633 0.5188 -0.8872 22 1 -0.3633 -1.0276 -0.0057 23 1 6.7548 -2.1026 1.7202 24 1 5.2279 0.1949 1.2261 25 1 3.8610 1.1016 0.5291 26 1 4.4039 -1.7130 -0.4180 27 1 5.4164 -0.3872 -1.0296 28 1 3.5929 -0.6986 -2.5562 29 1 3.3446 0.8246 -1.6903 30 1 0.9611 -2.4732 -0.8062 31 1 2.3566 -2.6529 -1.8964 32 1 2.6151 -2.4271 -0.1499 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260691811.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:46 Heat of formation + Delta-G solvation = -38.603294 kcal Electronic energy + Delta-G solvation = -15491.274182 eV Core-core repulsion = 13065.454198 eV Total energy + Delta-G solvation = -2425.819985 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.52237 -37.90541 -37.04880 -33.76435 -32.85426 -31.10630 -27.86326 -27.41755 -25.40896 -24.14517 -21.51589 -19.96859 -18.82273 -18.12700 -17.09470 -16.67915 -16.49689 -15.86159 -14.95692 -14.65914 -14.44514 -14.23680 -13.65011 -13.49240 -13.15969 -12.97473 -12.86684 -12.65779 -12.52694 -12.26701 -12.19521 -12.00262 -11.86138 -11.60142 -10.92762 -10.45938 -9.59372 -9.24898 -8.36032 -6.00744 1.32900 1.37993 1.49722 1.99375 2.25314 2.90973 3.04714 3.24596 3.88142 3.95350 4.13578 4.31863 4.42131 4.53140 4.58647 4.73312 4.79764 4.84684 4.97224 4.99425 5.06312 5.17142 5.33318 5.36393 5.42315 5.71719 5.94356 6.12040 6.20438 6.50034 7.16487 7.48121 8.06657 8.64818 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040720 B = 0.012611 C = 0.010791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.465496 B = 2219.790435 C = 2594.126989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.073 3.927 3 H 0.104 0.896 4 C 0.415 3.585 5 O -0.638 6.638 6 N -0.450 5.450 7 C -0.352 4.352 8 H 0.062 0.938 9 C 0.007 3.993 10 N -0.876 5.876 11 Si 0.981 3.019 12 H -0.280 1.280 13 H -0.265 1.265 14 H -0.273 1.273 15 C 0.125 3.875 16 C -0.139 4.139 17 C 0.048 3.952 18 N -0.510 5.510 19 C 0.028 3.972 20 H 0.052 0.948 21 H 0.090 0.910 22 H 0.041 0.959 23 H 0.273 0.727 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 5.100 -7.331 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.038 4.038 3 H 0.122 0.878 4 C 0.203 3.797 5 O -0.525 6.525 6 N -0.168 5.168 7 C -0.480 4.480 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.513 5.513 11 Si 0.805 3.195 12 H -0.206 1.206 13 H -0.189 1.189 14 H -0.198 1.198 15 C 0.002 3.998 16 C -0.179 4.179 17 C -0.080 4.080 18 N -0.233 5.233 19 C -0.121 4.121 20 H 0.071 0.929 21 H 0.109 0.891 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -0.991 4.879 -7.442 8.954 hybrid contribution 1.112 -0.818 1.809 2.275 sum 0.120 4.061 -5.633 6.945 Atomic orbital electron populations 1.21421 0.91531 1.01794 1.01995 1.22071 0.98078 0.98178 0.85521 0.87840 1.21794 0.83390 0.85554 0.89001 1.90455 1.56961 1.48728 1.56378 1.43934 1.06800 1.43111 1.22923 1.19462 0.95650 1.37954 0.94927 0.92033 1.25949 0.96815 0.95311 1.01589 1.70084 1.09712 1.43757 1.27734 0.85143 0.77779 0.78229 0.78380 1.20629 1.18897 1.19815 1.21650 0.94318 0.92315 0.91505 1.21960 0.99758 1.01063 0.95098 1.22018 0.85677 1.01985 0.98339 1.62083 1.24536 1.04997 1.31675 1.22313 1.00927 0.88631 1.00214 0.92920 0.89107 0.94001 0.91750 0.90544 0.91995 0.93305 0.90304 0.89071 0.89053 0.92219 0.89673 0.97690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.71 8.75 71.98 0.63 -3.08 16 2 C 0.07 2.77 2.45 44.40 0.11 2.88 16 3 H 0.10 3.48 6.68 -2.39 -0.02 3.46 16 4 C 0.41 20.94 4.57 88.06 0.40 21.34 16 5 O -0.64 -37.61 15.70 -3.07 -0.05 -37.66 16 6 N -0.45 -23.41 2.45 -634.31 -1.55 -24.96 16 7 C -0.35 -20.35 9.16 84.04 0.77 -19.58 16 8 H 0.06 3.88 7.51 -2.91 -0.02 3.85 16 9 C 0.01 0.36 4.88 84.93 0.41 0.77 16 10 N -0.88 -45.20 10.02 21.66 0.22 -44.99 16 11 Si 0.98 42.58 29.59 68.60 2.03 44.61 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 C 0.12 5.38 4.98 86.27 0.43 5.81 16 16 C -0.14 -5.27 4.70 30.20 0.14 -5.13 16 17 C 0.05 1.45 5.22 86.09 0.45 1.90 16 18 N -0.51 -17.57 4.74 -905.92 -4.29 -21.87 16 19 C 0.03 1.06 8.28 127.69 1.06 2.12 16 20 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 21 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 22 H 0.04 1.55 7.02 -2.39 -0.02 1.54 16 23 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 24 H 0.08 3.60 6.11 -2.38 -0.01 3.59 16 25 H 0.06 2.28 6.76 -2.39 -0.02 2.27 16 26 H 0.05 2.26 5.91 -2.39 -0.01 2.25 16 27 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.09 2.34 7.78 -2.39 -0.02 2.32 16 30 H 0.06 2.31 7.15 -2.39 -0.02 2.29 16 31 H 0.08 2.76 8.12 -2.39 -0.02 2.74 16 32 H 0.00 0.22 5.18 -2.38 -0.01 0.21 16 Total: -1.00 -66.21 245.92 1.86 -64.35 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.11 Total: 13.48 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 4.40 Total: 7.04 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -5.63 Total: -91.82 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -0.05 Total: -37.66 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -66.21 1.86 -64.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260691811.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.750 kcal (2) G-P(sol) polarization free energy of solvation -66.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds