Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.30266 * 2 1 4 4 C 1.50253 * 109.38374 * 119.74308 * 2 1 3 5 5 O 1.21279 * 118.62531 * 317.35160 * 4 2 1 6 6 N 1.33720 * 122.74924 * 137.36080 * 4 2 1 7 7 C 1.46496 * 118.53393 * 178.29042 * 6 4 2 8 8 C 1.50704 * 109.46915 * 270.01566 * 7 6 4 9 9 H 1.08001 * 119.99973 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99827 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00080 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00233 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47195 * 89.99423 * 12 10 8 14 14 H 1.48502 * 109.47249 * 209.99662 * 12 10 8 15 15 H 1.48499 * 109.46937 * 329.99862 * 12 10 8 16 16 C 1.46009 * 122.92836 * 358.30802 * 6 4 2 17 17 C 1.52984 * 110.04268 * 18.16147 * 16 6 4 18 18 N 1.46903 * 109.38395 * 240.26178 * 2 1 3 19 19 C 1.46901 * 111.00045 * 312.90896 * 18 2 1 20 20 H 1.09000 * 109.46968 * 179.73648 * 1 2 3 21 21 H 1.08996 * 109.47266 * 299.74123 * 1 2 3 22 22 H 1.09005 * 109.46960 * 59.73922 * 1 2 3 23 23 H 1.08997 * 109.47599 * 30.01594 * 7 6 4 24 24 H 1.09002 * 109.47448 * 150.02200 * 7 6 4 25 25 H 0.96992 * 119.99985 * 179.97438 * 11 10 8 26 26 H 1.09001 * 109.37786 * 257.99191 * 16 6 4 27 27 H 1.08996 * 109.28210 * 138.28181 * 16 6 4 28 28 H 1.09003 * 109.59682 * 189.93454 * 17 16 6 29 29 H 1.09004 * 109.71748 * 69.55558 * 17 16 6 30 30 H 1.09002 * 109.47401 * 293.15817 * 19 18 2 31 31 H 1.09001 * 109.46874 * 173.15829 * 19 18 2 32 32 H 1.09004 * 109.46970 * 53.15963 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0287 -0.7032 1.2306 5 8 1.4829 -0.4778 2.2900 6 7 3.0492 -1.5669 1.2068 7 6 3.4840 -2.1715 2.4684 8 6 4.5444 -1.3071 3.1004 9 1 4.8623 -0.3981 2.6115 10 6 5.1079 -1.6762 4.3034 11 7 6.0336 -0.9221 4.8549 12 14 4.5575 -3.2480 5.1495 13 1 5.4025 -4.3794 4.6901 14 1 4.6948 -3.0929 6.6200 15 1 3.1377 -3.5214 4.8109 16 6 3.7497 -1.9341 -0.0206 17 6 3.4713 -0.8996 -1.1127 18 7 2.0176 -0.6874 -1.2033 19 6 1.3115 -1.9597 -1.4053 20 1 -0.3633 -1.0277 -0.0047 21 1 -0.3633 0.5098 0.8923 22 1 -0.3633 0.5179 -0.8877 23 1 2.6327 -2.2545 3.1439 24 1 3.8920 -3.1635 2.2744 25 1 6.4298 -1.1815 5.7013 26 1 3.4060 -2.9133 -0.3541 27 1 4.8213 -1.9742 0.1749 28 1 3.8475 -1.2661 -2.0679 29 1 3.9630 0.0406 -0.8626 30 1 1.5714 -2.6508 -0.6035 31 1 1.6033 -2.3889 -2.3638 32 1 0.2359 -1.7833 -1.3985 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260698725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = -14.116539 kcal Electronic energy + Delta-G solvation = -14940.861998 eV Core-core repulsion = 12516.103839 eV Total energy + Delta-G solvation = -2424.758159 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.39250 -36.86474 -35.10720 -32.52574 -30.98372 -29.00522 -27.36689 -26.70400 -23.25306 -22.42958 -21.04185 -17.98091 -16.96799 -16.65827 -16.01022 -15.37985 -14.99292 -14.52502 -13.85345 -13.57307 -13.05093 -12.80214 -12.44364 -12.19309 -11.95967 -11.69799 -11.57908 -11.33100 -11.04244 -10.99754 -10.82435 -10.53744 -10.09499 -9.69952 -9.47680 -8.61176 -8.03417 -7.75324 -6.10709 -4.09509 3.24967 3.30041 3.33230 3.38213 3.63856 4.09869 4.38095 4.84072 5.03634 5.13041 5.19293 5.22535 5.40796 5.47458 5.61601 5.73470 5.82290 5.88472 6.02062 6.04026 6.10711 6.27772 6.60777 6.87258 6.99336 6.99851 7.25379 7.58959 8.25769 8.44926 8.89692 8.94706 9.49426 11.02656 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044605 B = 0.009577 C = 0.009133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.575637 B = 2923.003213 C = 3064.922271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.065 3.935 3 H 0.110 0.890 4 C 0.481 3.519 5 O -0.545 6.545 6 N -0.588 5.588 7 C 0.210 3.790 8 C -0.527 4.527 9 H 0.073 0.927 10 C 0.072 3.928 11 N -0.897 5.897 12 Si 0.876 3.124 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.079 3.921 17 C 0.036 3.964 18 N -0.527 5.527 19 C 0.006 3.994 20 H 0.058 0.942 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.043 0.957 24 H 0.023 0.977 25 H 0.265 0.735 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -2.587 -13.315 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.047 4.047 3 H 0.128 0.872 4 C 0.266 3.734 5 O -0.422 6.422 6 N -0.319 5.319 7 C 0.090 3.910 8 C -0.566 4.566 9 H 0.091 0.909 10 C -0.130 4.130 11 N -0.536 5.536 12 Si 0.703 3.297 13 H -0.201 1.201 14 H -0.209 1.209 15 H -0.189 1.189 16 C -0.046 4.046 17 C -0.092 4.092 18 N -0.251 5.251 19 C -0.142 4.142 20 H 0.077 0.923 21 H 0.093 0.907 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.535 -2.154 -13.012 15.190 hybrid contribution 0.288 -1.318 1.263 1.848 sum -7.247 -3.473 -11.750 14.235 Atomic orbital electron populations 1.21791 0.92110 1.02579 1.02871 1.21944 0.97418 0.99430 0.85875 0.87182 1.20793 0.80678 0.80471 0.91446 1.90667 1.57163 1.62679 1.31671 1.47449 1.31739 1.43671 1.09076 1.19696 0.96384 0.93208 0.81740 1.21278 1.19693 1.09409 1.06193 0.90869 1.24858 0.94550 0.96969 0.96638 1.69895 1.26952 1.38135 1.18570 0.86844 0.79824 0.83727 0.79345 1.20113 1.20863 1.18911 1.21958 0.99251 0.98087 0.85274 1.22579 0.88450 0.99836 0.98368 1.62749 1.04230 1.22136 1.35986 1.22629 0.99846 0.90618 1.01127 0.92271 0.90748 0.91313 0.93875 0.95909 0.92537 0.92343 0.89616 0.88896 0.89630 0.94558 0.91191 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.23 37.16 0.31 -1.54 16 2 C 0.06 1.03 3.02 -69.08 -0.21 0.82 16 3 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 4 C 0.48 10.21 6.56 -11.67 -0.08 10.13 16 5 O -0.54 -13.91 15.54 5.56 0.09 -13.83 16 6 N -0.59 -12.50 2.64 -175.96 -0.46 -12.96 16 7 C 0.21 5.30 4.11 -5.19 -0.02 5.28 16 8 C -0.53 -15.43 9.93 -34.44 -0.34 -15.77 16 9 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 10 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 11 N -0.90 -27.95 13.96 55.43 0.77 -27.17 16 12 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 16 C 0.08 1.29 5.62 -4.32 -0.02 1.26 16 17 C 0.04 0.48 6.06 -3.67 -0.02 0.46 16 18 N -0.53 -7.13 5.18 -236.30 -1.22 -8.36 16 19 C 0.01 0.07 8.48 60.07 0.51 0.58 16 20 H 0.06 0.78 6.17 -51.93 -0.32 0.46 16 21 H 0.07 1.09 7.81 -51.93 -0.41 0.68 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.04 1.18 6.27 -51.93 -0.33 0.86 16 24 H 0.02 0.54 7.46 -51.93 -0.39 0.15 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.06 0.84 6.79 -51.93 -0.35 0.49 16 27 H 0.09 1.44 8.12 -51.93 -0.42 1.02 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 30 H 0.04 0.50 5.74 -51.93 -0.30 0.20 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.83 5.74 -51.93 -0.30 0.54 16 LS Contribution 254.11 15.07 3.83 3.83 Total: -1.00 -33.91 254.11 -6.15 -40.06 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.51 Total: -2.04 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.02 Total: 3.26 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.91 Total: -48.49 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.91 -6.15 -40.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.945 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds