Wall clock time and date at job start Mon Mar 30 2020 02:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.30266 * 2 1 4 4 C 1.50253 * 109.38374 * 119.74308 * 2 1 3 5 5 O 1.21279 * 118.62531 * 317.35160 * 4 2 1 6 6 N 1.33720 * 122.74924 * 137.36080 * 4 2 1 7 7 C 1.46496 * 118.53393 * 178.29042 * 6 4 2 8 8 C 1.50704 * 109.46915 * 270.01566 * 7 6 4 9 9 H 1.08001 * 119.99973 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99827 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00080 * 179.97438 * 10 8 7 12 12 Si 1.86801 * 120.00233 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47195 * 89.99423 * 12 10 8 14 14 H 1.48502 * 109.47249 * 209.99662 * 12 10 8 15 15 H 1.48499 * 109.46937 * 329.99862 * 12 10 8 16 16 C 1.46009 * 122.92836 * 358.30802 * 6 4 2 17 17 C 1.52984 * 110.04268 * 18.16147 * 16 6 4 18 18 N 1.46903 * 109.38395 * 240.26178 * 2 1 3 19 19 C 1.46901 * 111.00045 * 312.90896 * 18 2 1 20 20 H 1.09000 * 109.46968 * 179.73648 * 1 2 3 21 21 H 1.08996 * 109.47266 * 299.74123 * 1 2 3 22 22 H 1.09005 * 109.46960 * 59.73922 * 1 2 3 23 23 H 1.08997 * 109.47599 * 30.01594 * 7 6 4 24 24 H 1.09002 * 109.47448 * 150.02200 * 7 6 4 25 25 H 0.96992 * 119.99985 * 179.97438 * 11 10 8 26 26 H 1.09001 * 109.37786 * 257.99191 * 16 6 4 27 27 H 1.08996 * 109.28210 * 138.28181 * 16 6 4 28 28 H 1.09003 * 109.59682 * 189.93454 * 17 16 6 29 29 H 1.09004 * 109.71748 * 69.55558 * 17 16 6 30 30 H 1.09002 * 109.47401 * 293.15817 * 19 18 2 31 31 H 1.09001 * 109.46874 * 173.15829 * 19 18 2 32 32 H 1.09004 * 109.46970 * 53.15963 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0287 -0.7032 1.2306 5 8 1.4829 -0.4778 2.2900 6 7 3.0492 -1.5669 1.2068 7 6 3.4840 -2.1715 2.4684 8 6 4.5444 -1.3071 3.1004 9 1 4.8623 -0.3981 2.6115 10 6 5.1079 -1.6762 4.3034 11 7 6.0336 -0.9221 4.8549 12 14 4.5575 -3.2480 5.1495 13 1 5.4025 -4.3794 4.6901 14 1 4.6948 -3.0929 6.6200 15 1 3.1377 -3.5214 4.8109 16 6 3.7497 -1.9341 -0.0206 17 6 3.4713 -0.8996 -1.1127 18 7 2.0176 -0.6874 -1.2033 19 6 1.3115 -1.9597 -1.4053 20 1 -0.3633 -1.0277 -0.0047 21 1 -0.3633 0.5098 0.8923 22 1 -0.3633 0.5179 -0.8877 23 1 2.6327 -2.2545 3.1439 24 1 3.8920 -3.1635 2.2744 25 1 6.4298 -1.1815 5.7013 26 1 3.4060 -2.9133 -0.3541 27 1 4.8213 -1.9742 0.1749 28 1 3.8475 -1.2661 -2.0679 29 1 3.9630 0.0406 -0.8626 30 1 1.5714 -2.6508 -0.6035 31 1 1.6033 -2.3889 -2.3638 32 1 0.2359 -1.7833 -1.3985 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260698725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:36 Heat of formation + Delta-G solvation = -40.808295 kcal Electronic energy + Delta-G solvation = -14942.019440 eV Core-core repulsion = 12516.103839 eV Total energy + Delta-G solvation = -2425.915601 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.85383 -38.34581 -36.76731 -34.67454 -32.35381 -30.62268 -28.93721 -27.86949 -25.04757 -23.73523 -22.65022 -19.43518 -19.12449 -18.07113 -17.61201 -16.73569 -16.65792 -15.85525 -15.63409 -15.17005 -14.54660 -14.32259 -14.11359 -13.75413 -13.30985 -13.04687 -12.95177 -12.81096 -12.50603 -12.46976 -12.31988 -11.97980 -11.91807 -11.79080 -11.18177 -10.87609 -9.58275 -9.27686 -8.39740 -6.45473 1.26737 1.31709 1.42603 1.66441 2.12899 2.26284 2.92180 2.93761 3.50106 3.87239 3.99025 4.06797 4.23936 4.35920 4.55928 4.61870 4.72030 4.77774 4.80620 4.88656 4.89995 4.99390 5.05067 5.23658 5.38758 5.43251 5.77065 5.93853 6.16050 6.54687 6.63507 7.14639 7.30337 8.77220 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.044605 B = 0.009577 C = 0.009133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.575637 B = 2923.003213 C = 3064.922271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 H 0.112 0.888 4 C 0.469 3.531 5 O -0.600 6.600 6 N -0.595 5.595 7 C 0.219 3.781 8 C -0.537 4.537 9 H 0.026 0.974 10 C 0.012 3.988 11 N -0.943 5.943 12 Si 0.950 3.050 13 H -0.249 1.249 14 H -0.279 1.279 15 H -0.260 1.260 16 C 0.072 3.928 17 C 0.041 3.959 18 N -0.514 5.514 19 C 0.003 3.997 20 H 0.063 0.937 21 H 0.056 0.944 22 H 0.101 0.899 23 H 0.019 0.981 24 H 0.046 0.954 25 H 0.270 0.730 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.018 0.982 31 H 0.100 0.900 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 -4.289 -15.385 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.039 4.039 3 H 0.130 0.870 4 C 0.256 3.744 5 O -0.481 6.481 6 N -0.325 5.325 7 C 0.097 3.903 8 C -0.575 4.575 9 H 0.045 0.955 10 C -0.187 4.187 11 N -0.583 5.583 12 Si 0.773 3.227 13 H -0.173 1.173 14 H -0.204 1.204 15 H -0.184 1.184 16 C -0.051 4.051 17 C -0.087 4.087 18 N -0.237 5.237 19 C -0.144 4.144 20 H 0.082 0.918 21 H 0.075 0.925 22 H 0.119 0.881 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.153 0.847 29 H 0.092 0.908 30 H 0.036 0.964 31 H 0.118 0.882 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.379 -3.865 -15.150 17.738 hybrid contribution 0.601 -0.717 1.856 2.079 sum -7.778 -4.582 -13.293 16.069 Atomic orbital electron populations 1.21775 0.90175 1.03128 1.03570 1.21982 0.98889 0.98890 0.84152 0.87023 1.21975 0.79943 0.79764 0.92674 1.90626 1.58973 1.64349 1.34144 1.47605 1.32044 1.43463 1.09434 1.19347 0.94048 0.93595 0.83351 1.21466 1.20862 1.08500 1.06706 0.95529 1.25866 0.94390 1.01094 0.97315 1.70044 1.28403 1.40499 1.19328 0.85677 0.79783 0.79320 0.77968 1.17297 1.20422 1.18406 1.22302 0.98223 1.00549 0.84056 1.22675 0.88407 0.98571 0.99017 1.62842 1.04359 1.23045 1.33498 1.22765 1.00466 0.89251 1.01935 0.91846 0.92468 0.88079 0.96263 0.93650 0.92124 0.89603 0.90702 0.84680 0.90783 0.96373 0.88156 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.23 71.98 0.59 -2.67 16 2 C 0.07 2.23 3.02 44.03 0.13 2.36 16 3 H 0.11 3.39 8.14 -2.39 -0.02 3.38 16 4 C 0.47 20.12 6.56 87.68 0.58 20.70 16 5 O -0.60 -31.74 15.54 -3.03 -0.05 -31.78 16 6 N -0.59 -25.35 2.64 -829.60 -2.19 -27.54 16 7 C 0.22 11.14 4.11 85.64 0.35 11.49 16 8 C -0.54 -32.51 9.93 25.60 0.25 -32.25 16 9 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 10 C 0.01 0.70 5.47 84.65 0.46 1.16 16 11 N -0.94 -60.36 13.96 21.45 0.30 -60.06 16 12 Si 0.95 45.32 27.47 68.60 1.88 47.21 16 13 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 14 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 15 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 16 C 0.07 2.22 5.62 86.47 0.49 2.70 16 17 C 0.04 0.99 6.06 86.24 0.52 1.51 16 18 N -0.51 -12.31 5.18 -901.50 -4.67 -16.97 16 19 C 0.00 0.07 8.48 127.69 1.08 1.15 16 20 H 0.06 1.54 6.17 -2.39 -0.01 1.53 16 21 H 0.06 1.65 7.81 -2.39 -0.02 1.63 16 22 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 23 H 0.02 1.07 6.27 -2.39 -0.01 1.06 16 24 H 0.05 2.09 7.46 -2.39 -0.02 2.08 16 25 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.09 2.20 6.79 -2.39 -0.02 2.18 16 27 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 28 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.07 1.96 8.08 -2.38 -0.02 1.94 16 30 H 0.02 0.43 5.74 -2.39 -0.01 0.42 16 31 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.57 5.74 -2.38 -0.01 1.56 16 Total: -1.00 -77.03 254.11 0.79 -76.24 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.04 Total: 6.76 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 4.46 Total: 6.15 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -6.55 Total: -104.57 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.05 Total: -31.78 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Total: -77.03 0.79 -76.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.433 kcal (2) G-P(sol) polarization free energy of solvation -77.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds