Wall clock time and date at job start Mon Mar 30 2020 02:15:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52562 * 1
3 3 H 1.11313 * 106.74552 * 2 1
4 4 N 1.45377 * 112.45256 * 117.12096 * 2 1 3
5 5 C 1.44642 * 117.29189 * 53.61567 * 4 2 1
6 6 C 1.51702 * 114.54066 * 67.16299 * 5 4 2
7 7 C 1.53002 * 110.39573 * 287.44173 * 6 5 4
8 8 N 1.46873 * 108.61332 * 83.95921 * 7 6 5
9 9 C 1.47461 * 118.43940 * 118.43284 * 8 7 6
10 10 C 1.50695 * 109.47491 * 89.99957 * 9 8 7
11 11 H 1.08008 * 119.99914 * 359.97438 * 10 9 8
12 12 C 1.37873 * 120.00539 * 179.97438 * 10 9 8
13 13 N 1.31512 * 119.99587 * 359.97438 * 12 10 9
14 14 Si 1.86800 * 120.00275 * 179.97438 * 12 10 9
15 15 H 1.48496 * 109.47138 * 359.97438 * 14 12 10
16 16 H 1.48498 * 109.47233 * 120.00074 * 14 12 10
17 17 H 1.48507 * 109.46659 * 239.99628 * 14 12 10
18 18 C 1.32912 * 123.22490 * 298.44820 * 8 7 6
19 19 O 1.22792 * 116.99431 * 176.35765 * 18 8 7
20 20 H 1.09002 * 109.47165 * 299.99666 * 1 2 3
21 21 H 1.09001 * 109.46961 * 179.97438 * 1 2 3
22 22 H 1.09004 * 109.47119 * 59.99759 * 1 2 3
23 23 H 1.00993 * 112.02870 * 184.63150 * 4 2 1
24 24 H 1.09925 * 108.00675 * 186.67812 * 5 4 2
25 25 H 1.08687 * 110.89791 * 303.41559 * 5 4 2
26 26 H 1.09048 * 109.02098 * 47.42165 * 6 5 4
27 27 H 1.08903 * 109.47088 * 166.86396 * 6 5 4
28 28 H 1.09510 * 109.08317 * 202.91096 * 7 6 5
29 29 H 1.08628 * 110.26596 * 322.25769 * 7 6 5
30 30 H 1.09004 * 109.46720 * 209.99618 * 9 8 7
31 31 H 1.08998 * 109.47077 * 329.99231 * 9 8 7
32 32 H 0.97004 * 120.00532 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5256 0.0000 0.0000
3 1 1.8463 1.0659 0.0000
4 7 2.0808 -0.6125 1.1958
5 6 1.6294 -1.9457 1.5288
6 6 2.0626 -3.0205 0.5498
7 6 1.2784 -2.8977 -0.7582
8 7 1.9365 -1.8960 -1.6071
9 6 2.4699 -2.3239 -2.9136
10 6 1.4042 -2.1660 -3.9674
11 1 0.4295 -1.7873 -3.6972
12 6 1.6734 -2.5050 -5.2764
13 7 2.8604 -2.9657 -5.6055
14 14 0.3522 -2.3099 -6.5824
15 1 -0.8855 -1.7769 -5.9587
16 1 0.8253 -1.3679 -7.6283
17 1 0.0665 -3.6307 -7.1985
18 6 2.0756 -0.6218 -1.2557
19 8 2.7050 0.1023 -2.0221
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5139 -0.8900
23 1 3.0879 -0.5423 1.2247
24 1 2.0464 -2.2102 2.5110
25 1 0.5475 -1.9752 1.6281
26 1 3.1269 -2.9044 0.3425
27 1 1.8873 -4.0022 0.9874
28 1 1.2844 -3.8651 -1.2714
29 1 0.2490 -2.6170 -0.5548
30 1 3.3315 -1.7089 -3.1733
31 1 2.7733 -3.3693 -2.8574
32 1 3.0501 -3.2039 -6.5265
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260702326.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:15:50
Heat of formation + Delta-G solvation = -37.464748 kcal
Electronic energy + Delta-G solvation = -14869.766433 eV
Core-core repulsion = 12443.995819 eV
Total energy + Delta-G solvation = -2425.770614 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.70546 -36.35498 -34.88573 -32.66272 -31.66669 -29.38186 -27.21444 -25.15010
-23.95417 -22.45520 -20.37246 -18.17975 -17.09976 -16.44232 -16.06147 -15.08496
-14.54458 -14.40894 -13.95183 -13.55120 -12.93386 -12.72876 -12.25298 -11.95088
-11.83218 -11.67287 -11.57013 -11.16457 -10.92827 -10.72185 -10.53929 -10.44056
-10.07142 -9.59430 -9.25116 -8.43594 -8.08170 -7.66497 -6.05202 -4.09441
3.28733 3.32007 3.36848 3.41609 3.93245 4.32857 4.44708 4.87475
4.93249 5.15889 5.22141 5.29713 5.49818 5.61957 5.67490 5.76172
5.90006 5.97007 6.07092 6.13314 6.22241 6.45014 7.01329 7.29347
7.40772 7.49370 7.50622 7.90981 8.23110 8.49809 8.90774 9.09952
9.55108 11.03339
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.043082 B = 0.009192 C = 0.008817
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 649.768527 B = 3045.291540 C = 3174.922391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.095 3.905
3 H 0.101 0.899
4 N -0.695 5.695
5 C 0.071 3.929
6 C -0.178 4.178
7 C 0.111 3.889
8 N -0.582 5.582
9 C 0.240 3.760
10 C -0.523 4.523
11 H 0.057 0.943
12 C 0.060 3.940
13 N -0.895 5.895
14 Si 0.899 3.101
15 H -0.273 1.273
16 H -0.282 1.282
17 H -0.283 1.283
18 C 0.466 3.534
19 O -0.564 6.564
20 H 0.068 0.932
21 H 0.059 0.941
22 H 0.067 0.933
23 H 0.354 0.646
24 H 0.067 0.933
25 H 0.072 0.928
26 H 0.067 0.933
27 H 0.078 0.922
28 H 0.084 0.916
29 H 0.065 0.935
30 H 0.048 0.952
31 H 0.030 0.970
32 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.102 -0.089 13.605 14.210
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.018 4.018
3 H 0.119 0.881
4 N -0.328 5.328
5 C -0.059 4.059
6 C -0.219 4.219
7 C -0.013 4.013
8 N -0.312 5.312
9 C 0.121 3.879
10 C -0.562 4.562
11 H 0.075 0.925
12 C -0.142 4.142
13 N -0.534 5.534
14 Si 0.726 3.274
15 H -0.198 1.198
16 H -0.208 1.208
17 H -0.210 1.210
18 C 0.250 3.750
19 O -0.444 6.444
20 H 0.087 0.913
21 H 0.078 0.922
22 H 0.086 0.914
23 H 0.174 0.826
24 H 0.085 0.915
25 H 0.091 0.909
26 H 0.085 0.915
27 H 0.096 0.904
28 H 0.103 0.897
29 H 0.083 0.917
30 H 0.066 0.934
31 H 0.048 0.952
32 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -4.147 0.446 13.371 14.006
hybrid contribution -0.182 -0.553 -1.467 1.578
sum -4.328 -0.108 11.904 12.667
Atomic orbital electron populations
1.21711 0.92956 1.02690 1.02605 1.21525 0.96447 0.99068 0.84747
0.88091 1.57229 1.15310 1.22794 1.37506 1.21221 1.01193 0.85947
0.97536 1.22572 1.01480 1.00501 0.97315 1.21610 0.95511 0.93652
0.90493 1.48047 1.55281 1.07543 1.20357 1.19565 0.95742 0.95253
0.77369 1.21410 0.98641 1.43310 0.92807 0.92515 1.24940 0.95713
0.95131 0.98413 1.69945 1.20676 1.44082 1.18674 0.86430 0.81703
0.77673 0.81547 1.19807 1.20839 1.20958 1.21560 0.81720 0.82874
0.88835 1.91092 1.41998 1.59327 1.51959 0.91266 0.92178 0.91406
0.82555 0.91459 0.90946 0.91457 0.90375 0.89741 0.91712 0.93434
0.95240 0.92782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.97 8.90 36.93 0.33 -1.65 16
2 C 0.09 1.52 2.92 -70.00 -0.20 1.31 16
3 H 0.10 1.62 8.16 -50.59 -0.41 1.21 16
4 N -0.70 -9.16 6.14 -110.54 -0.68 -9.84 16
5 C 0.07 0.81 5.56 -5.69 -0.03 0.78 16
6 C -0.18 -2.29 5.81 -27.39 -0.16 -2.45 16
7 C 0.11 1.83 5.86 -3.84 -0.02 1.81 16
8 N -0.58 -12.60 2.53 -174.17 -0.44 -13.04 16
9 C 0.24 6.44 4.98 -4.67 -0.02 6.42 16
10 C -0.52 -15.12 9.38 -34.44 -0.32 -15.45 16
11 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16
12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16
13 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16
14 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16
15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16
18 C 0.47 10.05 6.60 -11.90 -0.08 9.98 16
19 O -0.56 -15.11 16.06 4.18 0.07 -15.04 16
20 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
21 H 0.06 0.81 4.86 -51.93 -0.25 0.56 16
22 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
23 H 0.35 4.56 8.91 -39.25 -0.35 4.21 16
24 H 0.07 0.65 8.21 -51.40 -0.42 0.22 16
25 H 0.07 0.78 6.83 -52.10 -0.36 0.43 16
26 H 0.07 0.98 8.07 -51.90 -0.42 0.56 16
27 H 0.08 0.82 8.13 -51.98 -0.42 0.39 16
28 H 0.08 1.42 7.73 -51.64 -0.40 1.02 16
29 H 0.06 0.98 5.75 -52.14 -0.30 0.68 16
30 H 0.05 1.46 7.09 -51.93 -0.37 1.09 16
31 H 0.03 0.80 7.84 -51.93 -0.41 0.39 16
32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
LS Contribution 258.36 15.07 3.89 3.89
Total: -1.00 -33.32 258.36 -6.55 -39.88
By element:
Atomic # 1 Polarization: 5.40 SS G_CDS: -4.50 Total: 0.90 kcal
Atomic # 6 Polarization: 3.00 SS G_CDS: -0.61 Total: 2.39 kcal
Atomic # 7 Polarization: -48.77 SS G_CDS: -0.38 Total: -49.15 kcal
Atomic # 8 Polarization: -15.11 SS G_CDS: 0.07 Total: -15.04 kcal
Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal
Total LS contribution 3.89 Total: 3.89 kcal
Total: -33.32 -6.55 -39.88 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260702326.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.414 kcal
(2) G-P(sol) polarization free energy of solvation -33.325 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.465 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds