Wall clock time and date at job start Mon Mar 30 2020 02:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52562 * 1 3 3 H 1.11313 * 106.74552 * 2 1 4 4 N 1.45377 * 112.45256 * 117.12096 * 2 1 3 5 5 C 1.44642 * 117.29189 * 53.61567 * 4 2 1 6 6 C 1.51702 * 114.54066 * 67.16299 * 5 4 2 7 7 C 1.53002 * 110.39573 * 287.44173 * 6 5 4 8 8 N 1.46873 * 108.61332 * 83.95921 * 7 6 5 9 9 C 1.47461 * 118.43940 * 118.43284 * 8 7 6 10 10 C 1.50695 * 109.47491 * 89.99957 * 9 8 7 11 11 H 1.08008 * 119.99914 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00539 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99587 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00275 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47138 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47233 * 120.00074 * 14 12 10 17 17 H 1.48507 * 109.46659 * 239.99628 * 14 12 10 18 18 C 1.32912 * 123.22490 * 298.44820 * 8 7 6 19 19 O 1.22792 * 116.99431 * 176.35765 * 18 8 7 20 20 H 1.09002 * 109.47165 * 299.99666 * 1 2 3 21 21 H 1.09001 * 109.46961 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47119 * 59.99759 * 1 2 3 23 23 H 1.00993 * 112.02870 * 184.63150 * 4 2 1 24 24 H 1.09925 * 108.00675 * 186.67812 * 5 4 2 25 25 H 1.08687 * 110.89791 * 303.41559 * 5 4 2 26 26 H 1.09048 * 109.02098 * 47.42165 * 6 5 4 27 27 H 1.08903 * 109.47088 * 166.86396 * 6 5 4 28 28 H 1.09510 * 109.08317 * 202.91096 * 7 6 5 29 29 H 1.08628 * 110.26596 * 322.25769 * 7 6 5 30 30 H 1.09004 * 109.46720 * 209.99618 * 9 8 7 31 31 H 1.08998 * 109.47077 * 329.99231 * 9 8 7 32 32 H 0.97004 * 120.00532 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5256 0.0000 0.0000 3 1 1.8463 1.0659 0.0000 4 7 2.0808 -0.6125 1.1958 5 6 1.6294 -1.9457 1.5288 6 6 2.0626 -3.0205 0.5498 7 6 1.2784 -2.8977 -0.7582 8 7 1.9365 -1.8960 -1.6071 9 6 2.4699 -2.3239 -2.9136 10 6 1.4042 -2.1660 -3.9674 11 1 0.4295 -1.7873 -3.6972 12 6 1.6734 -2.5050 -5.2764 13 7 2.8604 -2.9657 -5.6055 14 14 0.3522 -2.3099 -6.5824 15 1 -0.8855 -1.7769 -5.9587 16 1 0.8253 -1.3679 -7.6283 17 1 0.0665 -3.6307 -7.1985 18 6 2.0756 -0.6218 -1.2557 19 8 2.7050 0.1023 -2.0221 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 3.0879 -0.5423 1.2247 24 1 2.0464 -2.2102 2.5110 25 1 0.5475 -1.9752 1.6281 26 1 3.1269 -2.9044 0.3425 27 1 1.8873 -4.0022 0.9874 28 1 1.2844 -3.8651 -1.2714 29 1 0.2490 -2.6170 -0.5548 30 1 3.3315 -1.7089 -3.1733 31 1 2.7733 -3.3693 -2.8574 32 1 3.0501 -3.2039 -6.5265 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260702326.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:50 Heat of formation + Delta-G solvation = -37.464748 kcal Electronic energy + Delta-G solvation = -14869.766433 eV Core-core repulsion = 12443.995819 eV Total energy + Delta-G solvation = -2425.770614 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.70546 -36.35498 -34.88573 -32.66272 -31.66669 -29.38186 -27.21444 -25.15010 -23.95417 -22.45520 -20.37246 -18.17975 -17.09976 -16.44232 -16.06147 -15.08496 -14.54458 -14.40894 -13.95183 -13.55120 -12.93386 -12.72876 -12.25298 -11.95088 -11.83218 -11.67287 -11.57013 -11.16457 -10.92827 -10.72185 -10.53929 -10.44056 -10.07142 -9.59430 -9.25116 -8.43594 -8.08170 -7.66497 -6.05202 -4.09441 3.28733 3.32007 3.36848 3.41609 3.93245 4.32857 4.44708 4.87475 4.93249 5.15889 5.22141 5.29713 5.49818 5.61957 5.67490 5.76172 5.90006 5.97007 6.07092 6.13314 6.22241 6.45014 7.01329 7.29347 7.40772 7.49370 7.50622 7.90981 8.23110 8.49809 8.90774 9.09952 9.55108 11.03339 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043082 B = 0.009192 C = 0.008817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.768527 B = 3045.291540 C = 3174.922391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.095 3.905 3 H 0.101 0.899 4 N -0.695 5.695 5 C 0.071 3.929 6 C -0.178 4.178 7 C 0.111 3.889 8 N -0.582 5.582 9 C 0.240 3.760 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.895 5.895 14 Si 0.899 3.101 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.466 3.534 19 O -0.564 6.564 20 H 0.068 0.932 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.354 0.646 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.102 -0.089 13.605 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 H 0.119 0.881 4 N -0.328 5.328 5 C -0.059 4.059 6 C -0.219 4.219 7 C -0.013 4.013 8 N -0.312 5.312 9 C 0.121 3.879 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.534 5.534 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.210 1.210 18 C 0.250 3.750 19 O -0.444 6.444 20 H 0.087 0.913 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.174 0.826 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.147 0.446 13.371 14.006 hybrid contribution -0.182 -0.553 -1.467 1.578 sum -4.328 -0.108 11.904 12.667 Atomic orbital electron populations 1.21711 0.92956 1.02690 1.02605 1.21525 0.96447 0.99068 0.84747 0.88091 1.57229 1.15310 1.22794 1.37506 1.21221 1.01193 0.85947 0.97536 1.22572 1.01480 1.00501 0.97315 1.21610 0.95511 0.93652 0.90493 1.48047 1.55281 1.07543 1.20357 1.19565 0.95742 0.95253 0.77369 1.21410 0.98641 1.43310 0.92807 0.92515 1.24940 0.95713 0.95131 0.98413 1.69945 1.20676 1.44082 1.18674 0.86430 0.81703 0.77673 0.81547 1.19807 1.20839 1.20958 1.21560 0.81720 0.82874 0.88835 1.91092 1.41998 1.59327 1.51959 0.91266 0.92178 0.91406 0.82555 0.91459 0.90946 0.91457 0.90375 0.89741 0.91712 0.93434 0.95240 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.90 36.93 0.33 -1.65 16 2 C 0.09 1.52 2.92 -70.00 -0.20 1.31 16 3 H 0.10 1.62 8.16 -50.59 -0.41 1.21 16 4 N -0.70 -9.16 6.14 -110.54 -0.68 -9.84 16 5 C 0.07 0.81 5.56 -5.69 -0.03 0.78 16 6 C -0.18 -2.29 5.81 -27.39 -0.16 -2.45 16 7 C 0.11 1.83 5.86 -3.84 -0.02 1.81 16 8 N -0.58 -12.60 2.53 -174.17 -0.44 -13.04 16 9 C 0.24 6.44 4.98 -4.67 -0.02 6.42 16 10 C -0.52 -15.12 9.38 -34.44 -0.32 -15.45 16 11 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 14 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 C 0.47 10.05 6.60 -11.90 -0.08 9.98 16 19 O -0.56 -15.11 16.06 4.18 0.07 -15.04 16 20 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.06 0.81 4.86 -51.93 -0.25 0.56 16 22 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.35 4.56 8.91 -39.25 -0.35 4.21 16 24 H 0.07 0.65 8.21 -51.40 -0.42 0.22 16 25 H 0.07 0.78 6.83 -52.10 -0.36 0.43 16 26 H 0.07 0.98 8.07 -51.90 -0.42 0.56 16 27 H 0.08 0.82 8.13 -51.98 -0.42 0.39 16 28 H 0.08 1.42 7.73 -51.64 -0.40 1.02 16 29 H 0.06 0.98 5.75 -52.14 -0.30 0.68 16 30 H 0.05 1.46 7.09 -51.93 -0.37 1.09 16 31 H 0.03 0.80 7.84 -51.93 -0.41 0.39 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 258.36 15.07 3.89 3.89 Total: -1.00 -33.32 258.36 -6.55 -39.88 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.50 Total: 0.90 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -0.61 Total: 2.39 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.38 Total: -49.15 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.07 Total: -15.04 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.32 -6.55 -39.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260702326.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.414 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds