Wall clock time and date at job start Mon Mar 30 2020 02:15:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52562 * 1
3 3 H 1.11313 * 106.74552 * 2 1
4 4 N 1.45377 * 112.45256 * 117.12096 * 2 1 3
5 5 C 1.44642 * 117.29189 * 53.61567 * 4 2 1
6 6 C 1.51702 * 114.54066 * 67.16299 * 5 4 2
7 7 C 1.53002 * 110.39573 * 287.44173 * 6 5 4
8 8 N 1.46873 * 108.61332 * 83.95921 * 7 6 5
9 9 C 1.47461 * 118.43940 * 118.43284 * 8 7 6
10 10 C 1.50695 * 109.47491 * 89.99957 * 9 8 7
11 11 H 1.08008 * 119.99914 * 359.97438 * 10 9 8
12 12 C 1.37873 * 120.00539 * 179.97438 * 10 9 8
13 13 N 1.31512 * 119.99587 * 359.97438 * 12 10 9
14 14 Si 1.86800 * 120.00275 * 179.97438 * 12 10 9
15 15 H 1.48496 * 109.47138 * 359.97438 * 14 12 10
16 16 H 1.48498 * 109.47233 * 120.00074 * 14 12 10
17 17 H 1.48507 * 109.46659 * 239.99628 * 14 12 10
18 18 C 1.32912 * 123.22490 * 298.44820 * 8 7 6
19 19 O 1.22792 * 116.99431 * 176.35765 * 18 8 7
20 20 H 1.09002 * 109.47165 * 299.99666 * 1 2 3
21 21 H 1.09001 * 109.46961 * 179.97438 * 1 2 3
22 22 H 1.09004 * 109.47119 * 59.99759 * 1 2 3
23 23 H 1.00993 * 112.02870 * 184.63150 * 4 2 1
24 24 H 1.09925 * 108.00675 * 186.67812 * 5 4 2
25 25 H 1.08687 * 110.89791 * 303.41559 * 5 4 2
26 26 H 1.09048 * 109.02098 * 47.42165 * 6 5 4
27 27 H 1.08903 * 109.47088 * 166.86396 * 6 5 4
28 28 H 1.09510 * 109.08317 * 202.91096 * 7 6 5
29 29 H 1.08628 * 110.26596 * 322.25769 * 7 6 5
30 30 H 1.09004 * 109.46720 * 209.99618 * 9 8 7
31 31 H 1.08998 * 109.47077 * 329.99231 * 9 8 7
32 32 H 0.97004 * 120.00532 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5256 0.0000 0.0000
3 1 1.8463 1.0659 0.0000
4 7 2.0808 -0.6125 1.1958
5 6 1.6294 -1.9457 1.5288
6 6 2.0626 -3.0205 0.5498
7 6 1.2784 -2.8977 -0.7582
8 7 1.9365 -1.8960 -1.6071
9 6 2.4699 -2.3239 -2.9136
10 6 1.4042 -2.1660 -3.9674
11 1 0.4295 -1.7873 -3.6972
12 6 1.6734 -2.5050 -5.2764
13 7 2.8604 -2.9657 -5.6055
14 14 0.3522 -2.3099 -6.5824
15 1 -0.8855 -1.7769 -5.9587
16 1 0.8253 -1.3679 -7.6283
17 1 0.0665 -3.6307 -7.1985
18 6 2.0756 -0.6218 -1.2557
19 8 2.7050 0.1023 -2.0221
20 1 -0.3633 0.5138 0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5139 -0.8900
23 1 3.0879 -0.5423 1.2247
24 1 2.0464 -2.2102 2.5110
25 1 0.5475 -1.9752 1.6281
26 1 3.1269 -2.9044 0.3425
27 1 1.8873 -4.0022 0.9874
28 1 1.2844 -3.8651 -1.2714
29 1 0.2490 -2.6170 -0.5548
30 1 3.3315 -1.7089 -3.1733
31 1 2.7733 -3.3693 -2.8574
32 1 3.0501 -3.2039 -6.5265
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260702326.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:15:50
Heat of formation + Delta-G solvation = -63.071151 kcal
Electronic energy + Delta-G solvation = -14870.876810 eV
Core-core repulsion = 12443.995819 eV
Total energy + Delta-G solvation = -2426.880991 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.25492 -37.79499 -36.57845 -34.72949 -33.03872 -30.79555 -29.10154 -26.44126
-25.66491 -24.20488 -21.55436 -19.77813 -18.66718 -18.41575 -17.59167 -16.66244
-16.22410 -15.96207 -15.51920 -14.82131 -14.61894 -14.13573 -13.92233 -13.44675
-13.22712 -13.08357 -13.00741 -12.93045 -12.73065 -12.45016 -12.27135 -11.78220
-11.66630 -11.54470 -10.86053 -10.67212 -9.60367 -9.29567 -8.27755 -6.42652
1.32891 1.35751 1.47600 1.69274 2.24757 2.39151 3.02126 3.19853
3.53000 3.85469 4.00774 4.04712 4.30987 4.48606 4.54777 4.68313
4.79036 4.82270 4.94323 4.95810 5.09661 5.14351 5.21435 5.35682
5.48180 5.73410 5.99980 6.16379 6.36561 6.64697 6.80291 7.23331
7.41824 8.80468
Molecular weight = 212.13amu
Principal moments of inertia in cm(-1)
A = 0.043082 B = 0.009192 C = 0.008817
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 649.768527 B = 3045.291540 C = 3174.922391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.110 3.890
3 H 0.098 0.902
4 N -0.683 5.683
5 C 0.066 3.934
6 C -0.167 4.167
7 C 0.102 3.898
8 N -0.584 5.584
9 C 0.254 3.746
10 C -0.541 4.541
11 H 0.053 0.947
12 C 0.005 3.995
13 N -0.929 5.929
14 Si 0.972 3.028
15 H -0.265 1.265
16 H -0.281 1.281
17 H -0.267 1.267
18 C 0.456 3.544
19 O -0.630 6.630
20 H 0.101 0.899
21 H 0.066 0.934
22 H 0.052 0.948
23 H 0.355 0.645
24 H 0.100 0.900
25 H 0.090 0.910
26 H 0.046 0.954
27 H 0.113 0.887
28 H 0.075 0.925
29 H 0.086 0.914
30 H -0.003 1.003
31 H 0.020 0.980
32 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.168 -0.588 15.385 16.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.004 4.004
3 H 0.116 0.884
4 N -0.315 5.315
5 C -0.063 4.063
6 C -0.207 4.207
7 C -0.020 4.020
8 N -0.313 5.313
9 C 0.132 3.868
10 C -0.579 4.579
11 H 0.071 0.929
12 C -0.194 4.194
13 N -0.569 5.569
14 Si 0.796 3.204
15 H -0.189 1.189
16 H -0.207 1.207
17 H -0.192 1.192
18 C 0.243 3.757
19 O -0.514 6.514
20 H 0.120 0.880
21 H 0.085 0.915
22 H 0.071 0.929
23 H 0.176 0.824
24 H 0.118 0.882
25 H 0.108 0.892
26 H 0.064 0.936
27 H 0.131 0.869
28 H 0.094 0.906
29 H 0.104 0.896
30 H 0.015 0.985
31 H 0.038 0.962
32 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -6.236 -0.091 15.215 16.443
hybrid contribution 0.516 -0.442 -1.980 2.093
sum -5.720 -0.532 13.235 14.428
Atomic orbital electron populations
1.21708 0.90793 1.03415 1.03474 1.21435 0.97861 0.98413 0.82672
0.88392 1.57343 1.15472 1.24004 1.34701 1.21411 1.02547 0.84173
0.98203 1.22512 0.99410 1.03160 0.95637 1.21983 0.96894 0.91783
0.91328 1.48089 1.55070 1.08922 1.19171 1.19022 0.94058 0.93499
0.80179 1.21645 0.98732 1.43660 0.93889 0.92912 1.25920 0.98181
0.94448 1.00834 1.70066 1.22702 1.44585 1.19514 0.85305 0.78671
0.78278 0.78178 1.18950 1.20703 1.19172 1.22883 0.80496 0.82165
0.90115 1.91052 1.44943 1.60828 1.54578 0.87995 0.91481 0.92912
0.82438 0.88229 0.89168 0.93558 0.86907 0.90610 0.89561 0.98487
0.96174 0.92339
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.43 8.90 71.84 0.64 -2.79 16
2 C 0.11 3.36 2.92 44.26 0.13 3.49 16
3 H 0.10 3.08 8.16 -1.13 -0.01 3.08 16
4 N -0.68 -16.10 6.14 -503.65 -3.09 -19.19 16
5 C 0.07 1.23 5.56 86.30 0.48 1.71 16
6 C -0.17 -3.84 5.81 30.17 0.18 -3.67 16
7 C 0.10 3.23 5.86 86.31 0.51 3.74 16
8 N -0.58 -25.82 2.53 -823.73 -2.08 -27.91 16
9 C 0.25 14.33 4.98 85.45 0.43 14.76 16
10 C -0.54 -32.17 9.38 25.60 0.24 -31.93 16
11 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16
12 C 0.01 0.30 5.46 84.65 0.46 0.76 16
13 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16
14 Si 0.97 45.71 29.54 68.60 2.03 47.74 16
15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
18 C 0.46 20.16 6.60 87.89 0.58 20.74 16
19 O -0.63 -35.58 16.06 -7.97 -0.13 -35.71 16
20 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16
21 H 0.07 1.58 4.86 -2.39 -0.01 1.57 16
22 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16
23 H 0.35 8.46 8.91 -89.62 -0.80 7.66 16
24 H 0.10 1.37 8.21 -1.89 -0.02 1.35 16
25 H 0.09 1.46 6.83 -2.55 -0.02 1.44 16
26 H 0.05 1.28 8.07 -2.36 -0.02 1.26 16
27 H 0.11 1.88 8.13 -2.44 -0.02 1.86 16
28 H 0.08 2.51 7.73 -2.12 -0.02 2.50 16
29 H 0.09 2.38 5.75 -2.58 -0.01 2.36 16
30 H 0.00 -0.20 7.09 -2.39 -0.02 -0.21 16
31 H 0.02 1.15 7.84 -2.39 -0.02 1.14 16
32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16
Total: -1.00 -76.16 258.36 0.97 -75.19
By element:
Atomic # 1 Polarization: 10.00 SS G_CDS: 0.33 Total: 10.33 kcal
Atomic # 6 Polarization: 3.17 SS G_CDS: 3.64 Total: 6.81 kcal
Atomic # 7 Polarization: -99.46 SS G_CDS: -4.89 Total: -104.35 kcal
Atomic # 8 Polarization: -35.58 SS G_CDS: -0.13 Total: -35.71 kcal
Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal
Total: -76.16 0.97 -75.19 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260702326.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.116 kcal
(2) G-P(sol) polarization free energy of solvation -76.161 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.045 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.071 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds