Wall clock time and date at job start Mon Mar 30 2020 02:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08996 * 109.60276 * 2 1 4 4 N 1.46881 * 109.60187 * 239.51779 * 2 1 3 5 5 C 1.45752 * 112.43811 * 154.45865 * 4 2 1 6 6 C 1.51689 * 113.93738 * 67.71475 * 5 4 2 7 7 C 1.53695 * 110.67789 * 293.14586 * 6 5 4 8 8 N 1.47247 * 108.10872 * 85.73095 * 7 6 5 9 9 C 1.46504 * 120.07745 * 110.05768 * 8 7 6 10 10 C 1.50703 * 109.47029 * 269.72808 * 9 8 7 11 11 H 1.08006 * 120.00159 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.33613 * 119.84834 * 289.78450 * 8 7 6 19 19 O 1.21274 * 119.88554 * 179.74167 * 18 8 7 20 20 H 1.09000 * 109.47112 * 299.67859 * 1 2 3 21 21 H 1.09001 * 109.47724 * 59.67828 * 1 2 3 22 22 H 1.09003 * 109.47449 * 179.67817 * 1 2 3 23 23 H 1.00897 * 111.00151 * 279.48183 * 4 2 1 24 24 H 1.09002 * 108.59441 * 188.86528 * 5 4 2 25 25 H 1.08996 * 108.59278 * 306.71296 * 5 4 2 26 26 H 1.09011 * 109.21801 * 53.55468 * 6 5 4 27 27 H 1.08993 * 109.22123 * 172.93814 * 6 5 4 28 28 H 1.08998 * 109.78880 * 326.11809 * 7 6 5 29 29 H 1.08998 * 109.86286 * 205.38748 * 7 6 5 30 30 H 1.09003 * 109.46930 * 149.73074 * 9 8 7 31 31 H 1.08996 * 109.47301 * 29.72641 * 9 8 7 32 32 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 7 2.0227 -0.7019 -1.1924 5 6 3.3544 -0.2603 -1.5873 6 6 4.4453 -0.6396 -0.6040 7 6 4.2649 0.1132 0.7237 8 7 3.3306 -0.6558 1.5627 9 6 3.8162 -1.3440 2.7614 10 6 4.2387 -2.7447 2.4000 11 1 4.1535 -3.0881 1.3796 12 6 4.7329 -3.5882 3.3723 13 7 4.8360 -3.1702 4.6150 14 14 5.2572 -5.3242 2.9242 15 1 4.0994 -6.2433 3.0665 16 1 6.3499 -5.7607 3.8302 17 1 5.7391 -5.3488 1.5198 18 6 2.0378 -0.7200 1.2312 19 8 1.2686 -1.3571 1.9190 20 1 -0.3633 0.5088 0.8929 21 1 -0.3634 0.5188 -0.8871 22 1 -0.3634 -1.0277 -0.0058 23 1 1.9978 -1.7018 -1.0596 24 1 3.5926 -0.6984 -2.5566 25 1 3.3444 0.8247 -1.6904 26 1 4.4039 -1.7131 -0.4186 27 1 5.4161 -0.3864 -1.0298 28 1 3.8555 1.1052 0.5328 29 1 5.2251 0.2035 1.2317 30 1 3.0198 -1.3850 3.5045 31 1 4.6682 -0.8019 3.1715 32 1 4.5641 -2.2686 4.8475 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260702329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:53 Heat of formation + Delta-G solvation = -41.396969 kcal Electronic energy + Delta-G solvation = -14920.553153 eV Core-core repulsion = 12494.612026 eV Total energy + Delta-G solvation = -2425.941127 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92237 -36.43191 -35.22493 -32.88032 -31.69936 -29.14005 -27.08675 -24.72571 -23.86061 -22.05079 -21.17761 -18.40045 -17.13120 -17.04078 -15.57455 -15.12795 -15.00465 -13.79757 -13.69044 -13.54081 -13.30346 -12.71351 -12.38785 -12.27156 -11.78761 -11.59043 -11.39644 -11.28990 -11.05997 -10.78501 -10.66533 -10.50293 -10.15103 -9.35534 -9.15379 -8.41684 -8.21648 -7.69569 -6.41983 -4.14164 3.26347 3.40681 3.44327 3.58653 3.78114 4.41664 4.50193 4.86358 4.92185 5.07840 5.30671 5.33311 5.47232 5.53658 5.69282 5.71944 5.97513 6.00204 6.05042 6.13594 6.44592 6.45480 6.74181 7.06783 7.08832 7.29209 7.41013 7.99480 8.25123 8.39059 8.74009 8.98454 9.55583 10.95218 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035751 B = 0.010084 C = 0.009387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.007923 B = 2776.098103 C = 2982.144149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.070 3.930 3 H 0.090 0.910 4 N -0.670 5.670 5 C 0.058 3.942 6 C -0.179 4.179 7 C 0.114 3.886 8 N -0.591 5.591 9 C 0.234 3.766 10 C -0.603 4.603 11 H 0.050 0.950 12 C 0.019 3.981 13 N -0.909 5.909 14 Si 1.074 2.926 15 H -0.287 1.287 16 H -0.283 1.283 17 H -0.290 1.290 18 C 0.472 3.528 19 O -0.541 6.541 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.349 0.651 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.020 0.980 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 7.774 -11.434 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.043 4.043 3 H 0.108 0.892 4 N -0.301 5.301 5 C -0.072 4.072 6 C -0.219 4.219 7 C -0.010 4.010 8 N -0.322 5.322 9 C 0.114 3.886 10 C -0.641 4.641 11 H 0.068 0.932 12 C -0.185 4.185 13 N -0.545 5.545 14 Si 0.902 3.098 15 H -0.213 1.213 16 H -0.209 1.209 17 H -0.216 1.216 18 C 0.256 3.744 19 O -0.418 6.418 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.167 0.833 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.569 6.464 -10.842 12.720 hybrid contribution 0.148 0.990 0.040 1.002 sum -1.421 7.454 -10.801 13.200 Atomic orbital electron populations 1.21492 0.92245 1.03058 1.01178 1.21952 0.97426 0.98180 0.86764 0.89213 1.60308 1.24211 1.11227 1.34388 1.21636 0.86810 1.00762 0.98025 1.22636 0.99951 1.02934 0.96366 1.21793 0.94574 0.93365 0.91224 1.48099 1.07135 1.49553 1.27429 1.19387 0.94212 0.92464 0.82554 1.22220 1.46582 0.98125 0.97223 0.93161 1.25819 0.94594 1.04931 0.93193 1.70774 1.45099 1.20236 1.18424 0.83471 0.76790 0.74571 0.74958 1.21329 1.20881 1.21572 1.21337 0.82729 0.82793 0.87516 1.90662 1.55497 1.42560 1.53044 0.92194 0.91962 0.91784 0.83250 0.90731 0.91398 0.90134 0.90635 0.92106 0.89793 0.94942 0.96209 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 8.90 37.15 0.33 -1.45 16 2 C 0.07 1.10 2.73 -68.54 -0.19 0.91 16 3 H 0.09 1.25 6.67 -51.93 -0.35 0.91 16 4 N -0.67 -9.70 6.35 -109.19 -0.69 -10.40 16 5 C 0.06 0.72 5.93 -5.11 -0.03 0.69 16 6 C -0.18 -2.57 5.87 -27.03 -0.16 -2.73 16 7 C 0.11 1.86 5.99 -3.27 -0.02 1.84 16 8 N -0.59 -12.65 2.45 -174.07 -0.43 -13.08 16 9 C 0.23 6.14 4.47 -5.19 -0.02 6.12 16 10 C -0.60 -17.26 9.38 -34.44 -0.32 -17.58 16 11 H 0.05 1.45 7.35 -52.48 -0.39 1.06 16 12 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 13 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 14 Si 1.07 25.78 29.90 -169.99 -5.08 20.69 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.47 10.04 6.77 -11.16 -0.08 9.96 16 19 O -0.54 -13.98 15.55 5.56 0.09 -13.89 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 1.03 7.99 -51.93 -0.41 0.61 16 23 H 0.35 5.59 8.51 -39.29 -0.33 5.25 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.74 7.78 -51.93 -0.40 0.34 16 26 H 0.08 1.45 7.59 -51.92 -0.39 1.05 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.82 6.76 -51.93 -0.35 0.47 16 29 H 0.08 1.37 7.79 -51.93 -0.40 0.96 16 30 H 0.03 0.96 7.28 -51.93 -0.38 0.58 16 31 H 0.02 0.52 7.74 -51.93 -0.40 0.12 16 32 H 0.27 8.17 7.22 -40.82 -0.29 7.87 16 LS Contribution 259.99 15.07 3.92 3.92 Total: -1.00 -32.98 259.99 -6.62 -39.60 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.60 Total: 2.11 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.58 Total: -1.80 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.36 Total: -50.63 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.98 -6.62 -39.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260702329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.798 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds