Wall clock time and date at job start Mon Mar 30 2020 02:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08996 * 109.60276 * 2 1 4 4 N 1.46881 * 109.60187 * 239.51779 * 2 1 3 5 5 C 1.45752 * 112.43811 * 154.45865 * 4 2 1 6 6 C 1.51689 * 113.93738 * 67.71475 * 5 4 2 7 7 C 1.53695 * 110.67789 * 293.14586 * 6 5 4 8 8 N 1.47247 * 108.10872 * 85.73095 * 7 6 5 9 9 C 1.46504 * 120.07745 * 110.05768 * 8 7 6 10 10 C 1.50703 * 109.47029 * 269.72808 * 9 8 7 11 11 H 1.08006 * 120.00159 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00120 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00089 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99938 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 269.99556 * 14 12 10 16 16 H 1.48503 * 109.47261 * 149.99737 * 14 12 10 17 17 H 1.48500 * 109.47454 * 29.99730 * 14 12 10 18 18 C 1.33613 * 119.84834 * 289.78450 * 8 7 6 19 19 O 1.21274 * 119.88554 * 179.74167 * 18 8 7 20 20 H 1.09000 * 109.47112 * 299.67859 * 1 2 3 21 21 H 1.09001 * 109.47724 * 59.67828 * 1 2 3 22 22 H 1.09003 * 109.47449 * 179.67817 * 1 2 3 23 23 H 1.00897 * 111.00151 * 279.48183 * 4 2 1 24 24 H 1.09002 * 108.59441 * 188.86528 * 5 4 2 25 25 H 1.08996 * 108.59278 * 306.71296 * 5 4 2 26 26 H 1.09011 * 109.21801 * 53.55468 * 6 5 4 27 27 H 1.08993 * 109.22123 * 172.93814 * 6 5 4 28 28 H 1.08998 * 109.78880 * 326.11809 * 7 6 5 29 29 H 1.08998 * 109.86286 * 205.38748 * 7 6 5 30 30 H 1.09003 * 109.46930 * 149.73074 * 9 8 7 31 31 H 1.08996 * 109.47301 * 29.72641 * 9 8 7 32 32 H 0.96998 * 119.99255 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8956 1.0268 0.0000 4 7 2.0227 -0.7019 -1.1924 5 6 3.3544 -0.2603 -1.5873 6 6 4.4453 -0.6396 -0.6040 7 6 4.2649 0.1132 0.7237 8 7 3.3306 -0.6558 1.5627 9 6 3.8162 -1.3440 2.7614 10 6 4.2387 -2.7447 2.4000 11 1 4.1535 -3.0881 1.3796 12 6 4.7329 -3.5882 3.3723 13 7 4.8360 -3.1702 4.6150 14 14 5.2572 -5.3242 2.9242 15 1 4.0994 -6.2433 3.0665 16 1 6.3499 -5.7607 3.8302 17 1 5.7391 -5.3488 1.5198 18 6 2.0378 -0.7200 1.2312 19 8 1.2686 -1.3571 1.9190 20 1 -0.3633 0.5088 0.8929 21 1 -0.3634 0.5188 -0.8871 22 1 -0.3634 -1.0277 -0.0058 23 1 1.9978 -1.7018 -1.0596 24 1 3.5926 -0.6984 -2.5566 25 1 3.3444 0.8247 -1.6904 26 1 4.4039 -1.7131 -0.4186 27 1 5.4161 -0.3864 -1.0298 28 1 3.8555 1.1052 0.5328 29 1 5.2251 0.2035 1.2317 30 1 3.0198 -1.3850 3.5045 31 1 4.6682 -0.8019 3.1715 32 1 4.5641 -2.2686 4.8475 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260702329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:53 Heat of formation + Delta-G solvation = -66.346268 kcal Electronic energy + Delta-G solvation = -14921.635036 eV Core-core repulsion = 12494.612026 eV Total energy + Delta-G solvation = -2427.023010 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47149 -37.90240 -36.90737 -34.92279 -33.08289 -30.52830 -28.97020 -26.03330 -25.74567 -23.76317 -22.33324 -19.95453 -19.16324 -18.62225 -17.25622 -16.53875 -16.26300 -15.71687 -15.46104 -14.96718 -14.70250 -14.23364 -13.97256 -13.89889 -13.32378 -13.16482 -12.97937 -12.82560 -12.56551 -12.32916 -12.05945 -11.96475 -11.89144 -11.19252 -10.90554 -10.66994 -9.64511 -9.47110 -8.74157 -6.50182 1.44881 1.54272 1.64615 1.71971 2.16220 2.49074 3.04576 3.19931 3.48767 3.77542 3.93999 4.08531 4.26062 4.37720 4.55928 4.58419 4.65324 4.76691 4.83929 4.90807 4.97144 5.05266 5.27068 5.29884 5.48065 5.75810 5.92686 6.06970 6.14217 6.39338 6.61960 7.23074 7.35372 8.60317 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035751 B = 0.010084 C = 0.009387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.007923 B = 2776.098103 C = 2982.144149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.085 3.915 3 H 0.122 0.878 4 N -0.662 5.662 5 C 0.057 3.943 6 C -0.170 4.170 7 C 0.105 3.895 8 N -0.596 5.596 9 C 0.243 3.757 10 C -0.610 4.610 11 H 0.044 0.956 12 C -0.033 4.033 13 N -0.931 5.931 14 Si 1.121 2.879 15 H -0.281 1.281 16 H -0.275 1.275 17 H -0.266 1.266 18 C 0.460 3.540 19 O -0.600 6.600 20 H 0.054 0.946 21 H 0.095 0.905 22 H 0.041 0.959 23 H 0.337 0.663 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.039 0.961 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.079 0.921 30 H -0.011 1.011 31 H 0.017 0.983 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 8.723 -14.145 16.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.028 4.028 3 H 0.140 0.860 4 N -0.291 5.291 5 C -0.073 4.073 6 C -0.210 4.210 7 C -0.017 4.017 8 N -0.326 5.326 9 C 0.122 3.878 10 C -0.648 4.648 11 H 0.063 0.937 12 C -0.232 4.232 13 N -0.568 5.568 14 Si 0.942 3.058 15 H -0.207 1.207 16 H -0.200 1.200 17 H -0.191 1.191 18 C 0.247 3.753 19 O -0.481 6.481 20 H 0.073 0.927 21 H 0.114 0.886 22 H 0.060 0.940 23 H 0.155 0.845 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.058 0.942 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.007 0.993 31 H 0.035 0.965 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.934 7.469 -13.604 15.547 hybrid contribution -0.043 0.756 0.875 1.157 sum -0.976 8.225 -12.729 15.186 Atomic orbital electron populations 1.21500 0.91480 1.02110 1.02522 1.22006 0.97977 0.98804 0.84011 0.86044 1.60436 1.25662 1.10438 1.32602 1.21807 0.84759 1.02731 0.97969 1.22562 1.02612 0.99934 0.95885 1.22196 0.93564 0.94721 0.91200 1.48191 1.08435 1.49429 1.26560 1.18924 0.92438 0.92443 0.84044 1.22479 1.46090 0.99321 0.96911 0.93725 1.27385 0.94209 1.08866 0.92691 1.70901 1.46699 1.19746 1.19484 0.82894 0.76883 0.69957 0.76105 1.20739 1.19975 1.19090 1.22603 0.81984 0.82221 0.88510 1.90625 1.56941 1.45213 1.55301 0.92691 0.88619 0.93986 0.84504 0.88575 0.88372 0.94229 0.87581 0.88215 0.90265 0.99326 0.96477 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 8.90 71.98 0.64 -2.61 16 2 C 0.08 2.48 2.73 44.39 0.12 2.60 16 3 H 0.12 2.82 6.67 -2.39 -0.02 2.81 16 4 N -0.66 -17.17 6.35 -499.37 -3.17 -20.34 16 5 C 0.06 1.15 5.93 86.09 0.51 1.67 16 6 C -0.17 -4.40 5.87 30.40 0.18 -4.22 16 7 C 0.10 3.18 5.99 86.47 0.52 3.70 16 8 N -0.60 -25.64 2.45 -823.66 -2.02 -27.66 16 9 C 0.24 13.32 4.47 85.63 0.38 13.71 16 10 C -0.61 -35.82 9.38 25.60 0.24 -35.58 16 11 H 0.04 2.62 7.35 -2.91 -0.02 2.60 16 12 C -0.03 -1.98 5.46 84.65 0.46 -1.52 16 13 N -0.93 -58.73 13.65 21.45 0.29 -58.44 16 14 Si 1.12 51.88 29.90 68.60 2.05 53.93 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 C 0.46 19.66 6.77 88.06 0.60 20.25 16 19 O -0.60 -32.30 15.55 -3.01 -0.05 -32.34 16 20 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.04 1.33 7.99 -2.39 -0.02 1.31 16 23 H 0.34 10.33 8.51 -89.70 -0.76 9.56 16 24 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.10 1.52 7.78 -2.39 -0.02 1.50 16 26 H 0.04 1.37 7.59 -2.38 -0.02 1.35 16 27 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.10 2.27 6.76 -2.39 -0.02 2.26 16 29 H 0.08 2.46 7.79 -2.39 -0.02 2.44 16 30 H -0.01 -0.71 7.28 -2.39 -0.02 -0.73 16 31 H 0.02 0.94 7.74 -2.39 -0.02 0.92 16 32 H 0.25 16.27 7.22 -92.71 -0.67 15.60 16 Total: -1.00 -75.32 259.99 1.20 -74.12 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.45 Total: 12.75 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 3.65 Total: -2.01 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.90 Total: -106.44 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.05 Total: -32.34 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 2.05 Total: 53.93 kcal Total: -75.32 1.20 -74.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260702329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.774 kcal (2) G-P(sol) polarization free energy of solvation -75.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds