Wall clock time and date at job start Mon Mar 30 2020 03:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 C 1.52999 * 109.47628 * 239.99988 * 2 1 3 5 5 C 1.52997 * 109.47317 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47060 * 59.99960 * 5 4 2 7 7 H 1.08992 * 109.47399 * 59.99823 * 6 5 4 8 8 O 1.42903 * 109.46726 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47233 * 299.99657 * 6 5 4 10 10 H 1.09002 * 109.47075 * 300.00932 * 9 6 5 11 11 C 1.52997 * 109.47415 * 180.02562 * 9 6 5 12 12 C 1.50703 * 109.47000 * 65.00008 * 11 9 6 13 13 H 1.07993 * 119.99836 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99680 * 179.97438 * 12 11 9 15 15 N 1.31511 * 120.00259 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99801 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46938 * 60.00356 * 16 14 12 18 18 H 1.48500 * 109.47318 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47469 * 300.00386 * 16 14 12 20 20 C 1.52997 * 109.46817 * 60.00194 * 9 6 5 21 21 H 1.09001 * 109.47142 * 300.00180 * 1 2 3 22 22 H 1.08996 * 109.46698 * 60.00234 * 1 2 3 23 23 H 1.09002 * 109.46838 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46866 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47261 * 299.99422 * 3 2 1 26 26 H 1.09001 * 109.47377 * 59.99963 * 3 2 1 27 27 H 1.08996 * 109.46929 * 59.99225 * 4 2 1 28 28 H 1.09002 * 109.46716 * 300.00030 * 4 2 1 29 29 H 1.09002 * 109.47153 * 299.99641 * 5 4 2 30 30 H 1.09001 * 109.46832 * 179.97438 * 5 4 2 31 31 H 0.96696 * 114.00096 * 299.99534 * 8 6 5 32 32 H 1.09002 * 109.47223 * 184.99948 * 11 9 6 33 33 H 1.09001 * 109.46547 * 305.00282 * 11 9 6 34 34 H 0.97001 * 120.00312 * 180.02562 * 15 14 12 35 35 H 1.09002 * 109.47153 * 60.00231 * 20 9 6 36 36 H 1.09001 * 109.47289 * 180.02562 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5701 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0005 7 1 3.7159 -2.4708 0.0003 8 8 5.5086 -1.4433 0.0011 9 6 3.5695 -0.7221 1.2497 10 1 3.9331 0.3055 1.2499 11 6 4.0794 -1.4432 2.4990 12 6 5.5814 -1.3369 2.5625 13 1 6.1184 -0.8075 1.7894 14 6 6.2697 -1.9146 3.6082 15 7 5.6157 -2.5588 4.5499 16 14 8.1314 -1.7834 3.6866 17 1 8.5248 -0.3527 3.7451 18 1 8.6264 -2.4833 4.8992 19 1 8.7233 -2.4105 2.4775 20 6 2.0396 -0.7215 1.2493 21 1 -0.3633 0.5139 0.8900 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4426 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6767 -0.2075 -2.1391 28 1 1.6768 -1.7489 -1.2492 29 1 3.9338 0.3058 -1.2486 30 1 3.9335 -1.2360 -2.1386 31 1 5.9022 -1.8848 -0.7639 32 1 3.6448 -0.9837 3.3867 33 1 3.7910 -2.4935 2.4553 34 1 6.0999 -2.9649 5.2858 35 1 1.6759 -1.7491 1.2491 36 1 1.6761 -0.2073 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260705362.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:37 Heat of formation + Delta-G solvation = -104.794448 kcal Electronic energy + Delta-G solvation = -15182.461184 eV Core-core repulsion = 12857.311279 eV Total energy + Delta-G solvation = -2325.149905 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75134 -37.18621 -35.32988 -33.28134 -32.16305 -28.79027 -28.14027 -26.43774 -24.84784 -22.90515 -21.07216 -19.44686 -18.40180 -17.70038 -16.52905 -16.05004 -15.66032 -15.32536 -14.83055 -14.41591 -14.26259 -13.80511 -13.57473 -13.08242 -12.95749 -12.81296 -12.61317 -12.48352 -12.46143 -12.34596 -12.07260 -11.83645 -11.53509 -11.17738 -11.08525 -10.80148 -10.67703 -10.45460 -10.19120 -8.06568 -6.09080 1.40116 1.44143 1.51810 2.49676 3.25294 3.55067 3.80109 3.88014 4.10862 4.23583 4.28596 4.47065 4.57425 4.58560 4.70969 4.80824 4.90323 4.97963 5.05652 5.09924 5.14180 5.17875 5.21662 5.26060 5.28342 5.40606 5.53944 5.57054 5.64825 5.66785 5.87372 5.97085 6.47074 7.07413 7.27003 7.56397 9.06453 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.045990 B = 0.008757 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.676741 B = 3196.755245 C = 3493.728869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.099 4.099 5 C -0.143 4.143 6 C 0.120 3.880 7 H 0.030 0.970 8 O -0.558 6.558 9 C -0.069 4.069 10 H 0.055 0.945 11 C 0.033 3.967 12 C -0.493 4.493 13 H 0.080 0.920 14 C -0.016 4.016 15 N -0.949 5.949 16 Si 0.961 3.039 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.269 1.269 20 C -0.098 4.098 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.366 0.634 32 H -0.019 1.019 33 H -0.019 1.019 34 H 0.256 0.744 35 H 0.051 0.949 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 4.954 -13.669 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.065 4.065 3 C -0.199 4.199 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.061 3.939 7 H 0.048 0.952 8 O -0.364 6.364 9 C -0.088 4.088 10 H 0.074 0.926 11 C -0.004 4.004 12 C -0.531 4.531 13 H 0.098 0.902 14 C -0.211 4.211 15 N -0.593 5.593 16 Si 0.787 3.213 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.194 1.194 20 C -0.135 4.135 21 H 0.071 0.929 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.214 0.786 32 H -0.001 1.001 33 H -0.001 1.001 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.088 5.193 -12.964 16.139 hybrid contribution 1.103 -0.658 0.321 1.324 sum -6.985 4.536 -12.643 15.140 Atomic orbital electron populations 1.21816 0.93224 1.01966 1.02254 1.20580 0.96169 0.95503 0.94254 1.21943 1.00915 0.95171 1.01885 1.21517 0.94007 1.00632 0.97509 1.22274 0.97098 1.01499 0.97210 1.21638 0.80972 0.96688 0.94609 0.95206 1.86997 1.19723 1.81144 1.48492 1.21107 0.94517 0.98761 0.94392 0.92628 1.19030 0.95647 0.93402 0.92346 1.21875 0.93128 1.31767 1.06365 0.90194 1.25967 1.03156 0.96058 0.95906 1.70125 1.37128 1.38758 1.13257 0.85565 0.80453 0.78203 0.77091 1.19723 1.21517 1.19448 1.21613 0.93889 0.99984 0.98048 0.92893 0.91005 0.92634 0.93382 0.91018 0.93259 0.89699 0.91964 0.91421 0.90455 0.78649 1.00113 1.00081 0.93548 0.92986 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.47 71.98 0.61 -2.20 16 2 C -0.07 -1.67 0.77 -52.18 -0.04 -1.71 16 3 C -0.14 -3.54 7.78 71.98 0.56 -2.98 16 4 C -0.10 -2.29 4.73 30.59 0.14 -2.14 16 5 C -0.14 -3.84 5.27 30.59 0.16 -3.68 16 6 C 0.12 4.44 2.90 30.60 0.09 4.53 16 7 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 8 O -0.56 -22.73 9.83 -148.98 -1.47 -24.19 16 9 C -0.07 -2.94 1.76 -10.79 -0.02 -2.96 16 10 H 0.06 2.46 6.43 -2.39 -0.02 2.44 16 11 C 0.03 1.82 4.45 29.85 0.13 1.96 16 12 C -0.49 -29.42 7.83 25.60 0.20 -29.22 16 13 H 0.08 4.68 5.72 -2.91 -0.02 4.66 16 14 C -0.02 -1.00 5.46 84.66 0.46 -0.54 16 15 N -0.95 -61.26 13.29 21.45 0.28 -60.98 16 16 Si 0.96 47.57 29.54 68.60 2.03 49.60 16 17 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 19 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 20 C -0.10 -3.38 4.01 30.60 0.12 -3.26 16 21 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.05 1.37 4.81 -2.39 -0.01 1.36 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.87 6.43 -2.39 -0.02 1.85 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.37 11.08 9.08 -74.06 -0.67 10.41 16 32 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 33 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.48 274.04 3.64 -66.84 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.37 Total: 10.93 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 2.42 Total: -42.20 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.28 Total: -60.98 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -1.47 Total: -24.19 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -70.48 3.64 -66.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260705362.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.952 kcal (2) G-P(sol) polarization free energy of solvation -70.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds