Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47029 * 2 1 4 4 C 1.52998 * 109.47000 * 119.99975 * 2 1 3 5 5 C 1.53000 * 109.47156 * 64.54832 * 4 2 1 6 6 C 1.53005 * 113.00252 * 53.91740 * 5 4 2 7 7 C 1.52996 * 109.47321 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47003 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00119 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00061 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00010 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99931 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47312 * 89.99531 * 12 10 8 14 14 H 1.48498 * 109.47304 * 209.99987 * 12 10 8 15 15 H 1.48505 * 109.47069 * 329.99555 * 12 10 8 16 16 C 1.54042 * 113.81542 * 282.09461 * 5 4 2 17 17 O 1.44451 * 85.42364 * 223.23353 * 16 5 4 18 18 C 1.44180 * 93.37869 * 24.08928 * 17 16 5 19 19 H 1.08996 * 109.47282 * 50.93667 * 1 2 3 20 20 H 1.08997 * 109.47175 * 290.93964 * 1 2 3 21 21 H 1.09003 * 109.47048 * 170.93823 * 1 2 3 22 22 H 1.09001 * 109.46900 * 239.99976 * 2 1 3 23 23 H 1.09001 * 109.47299 * 60.00220 * 3 2 1 24 24 H 1.09001 * 109.47175 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47408 * 300.00000 * 3 2 1 26 26 H 1.09004 * 109.46872 * 184.54210 * 4 2 1 27 27 H 1.08995 * 109.47572 * 304.54756 * 4 2 1 28 28 H 1.09004 * 109.47088 * 300.00802 * 6 5 4 29 29 H 1.08996 * 109.46643 * 60.00019 * 6 5 4 30 30 H 1.08996 * 109.47319 * 300.00471 * 7 6 5 31 31 H 1.09008 * 109.47210 * 59.99954 * 7 6 5 32 32 H 0.96999 * 119.99771 * 180.02562 * 11 10 8 33 33 H 1.08996 * 113.85949 * 337.34180 * 16 5 4 34 34 H 1.08998 * 113.86430 * 109.04834 * 16 5 4 35 35 H 1.08999 * 113.86351 * 221.76516 * 18 17 16 36 36 H 1.08995 * 113.86553 * 90.05727 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6255 -2.1930 1.1934 6 6 2.0598 -2.8878 -0.0988 7 6 1.6057 -4.3485 -0.0699 8 6 2.0341 -5.0330 -1.3423 9 1 2.5764 -4.4814 -2.0960 10 6 1.7346 -6.3637 -1.5438 11 7 2.1080 -6.9609 -2.6544 12 14 0.7973 -7.3179 -0.2399 13 1 -0.6610 -7.2071 -0.4978 14 1 1.2009 -8.7463 -0.2858 15 1 1.1067 -6.7590 1.1007 16 6 0.1512 -2.4386 1.5664 17 8 0.6514 -3.5578 2.3304 18 6 1.9668 -2.9843 2.4701 19 1 -0.3633 0.6476 -0.7979 20 1 -0.3633 0.3673 0.9598 21 1 -0.3633 -1.0149 -0.1619 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 3.1270 -0.6513 1.2908 27 1 1.6117 -0.2567 2.1373 28 1 1.6068 -2.3836 -0.9524 29 1 3.1454 -2.8461 -0.1864 30 1 2.0584 -4.8529 0.7838 31 1 0.5199 -4.3898 0.0176 32 1 1.8969 -7.8969 -2.7963 33 1 -0.2867 -1.6486 2.1764 34 1 -0.4756 -2.7245 0.7217 35 1 2.7769 -3.7020 2.3407 36 1 2.0844 -2.3613 3.3567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260973968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = -40.054291 kcal Electronic energy + Delta-G solvation = -15001.586394 eV Core-core repulsion = 12679.243833 eV Total energy + Delta-G solvation = -2322.342561 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61200 -36.18122 -33.48308 -31.68871 -29.48858 -27.47756 -25.84312 -25.47035 -24.84351 -20.84155 -19.98585 -18.18208 -16.76723 -15.64503 -15.57609 -15.39358 -14.50853 -13.98820 -13.82951 -13.54003 -12.96270 -12.56330 -12.32105 -12.03294 -11.77200 -11.62627 -11.47272 -11.30724 -11.02257 -10.80116 -10.43816 -10.30355 -10.00351 -9.75773 -9.47116 -9.34109 -9.28307 -8.83113 -8.43938 -5.96866 -3.93964 3.40070 3.46850 3.58732 4.15701 4.51684 4.55658 4.92709 5.02609 5.12290 5.34326 5.38573 5.53653 5.55433 5.58847 5.70121 5.79820 5.81882 5.87822 5.95882 6.02761 6.13718 6.25084 6.33851 6.39194 6.44578 6.46566 6.54630 6.64350 6.75238 7.03153 7.49417 7.58163 7.90467 8.61628 9.08468 9.67402 11.16544 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.009031 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.934778 B = 3099.853494 C = 3483.777224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.104 4.104 5 C -0.121 4.121 6 C -0.080 4.080 7 C -0.009 4.009 8 C -0.521 4.521 9 H 0.069 0.931 10 C 0.066 3.934 11 N -0.908 5.908 12 Si 0.876 3.124 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.259 1.259 16 C 0.040 3.960 17 O -0.373 6.373 18 C 0.038 3.962 19 H 0.050 0.950 20 H 0.049 0.951 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.020 0.980 31 H 0.015 0.985 32 H 0.261 0.739 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 14.290 8.669 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.121 4.121 6 C -0.118 4.118 7 C -0.046 4.046 8 C -0.559 4.559 9 H 0.087 0.913 10 C -0.134 4.134 11 N -0.547 5.547 12 Si 0.704 3.296 13 H -0.205 1.205 14 H -0.217 1.217 15 H -0.183 1.183 16 C -0.037 4.037 17 O -0.291 6.291 18 C -0.039 4.039 19 H 0.069 0.931 20 H 0.068 0.932 21 H 0.082 0.918 22 H 0.098 0.902 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.933 13.875 8.672 16.476 hybrid contribution -0.417 -0.466 0.513 0.808 sum -2.350 13.410 9.185 16.422 Atomic orbital electron populations 1.21988 0.95532 1.02352 1.01033 1.21151 0.95914 0.95557 0.99200 1.21842 1.00777 0.96411 1.01231 1.21670 1.00779 0.94245 0.97447 1.23771 0.95366 0.95037 0.97900 1.21303 1.00310 0.97580 0.92582 1.19594 0.96364 0.91454 0.97201 1.21231 1.36381 0.95585 1.02662 0.91309 1.25006 0.95475 0.97696 0.95251 1.69927 1.47569 1.11694 1.25511 0.86811 0.80405 0.78801 0.83633 1.20474 1.21699 1.18298 1.24200 0.96450 0.88359 0.94642 1.89758 1.25492 1.38092 1.75778 1.23998 0.87783 0.96024 0.96089 0.93108 0.93155 0.91751 0.90197 0.93170 0.92910 0.92960 0.91756 0.92364 0.91925 0.92313 0.96205 0.96704 0.92904 0.91256 0.89114 0.89141 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.02 37.16 0.30 -1.46 16 2 C -0.10 -1.21 2.61 -90.62 -0.24 -1.44 16 3 C -0.15 -1.48 9.18 37.15 0.34 -1.13 16 4 C -0.10 -1.30 4.30 -26.73 -0.11 -1.41 16 5 C -0.12 -1.89 0.90 -153.42 -0.14 -2.02 16 6 C -0.08 -1.57 4.34 -26.73 -0.12 -1.68 16 7 C -0.01 -0.22 2.76 -27.89 -0.08 -0.29 16 8 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 9 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 10 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 11 N -0.91 -28.73 13.96 55.43 0.77 -27.95 16 12 Si 0.88 22.88 27.47 -169.99 -4.67 18.21 16 13 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 15 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 16 C 0.04 0.64 5.50 37.65 0.21 0.84 16 17 O -0.37 -7.15 10.87 -35.23 -0.38 -7.53 16 18 C 0.04 0.61 7.75 37.64 0.29 0.90 16 19 H 0.05 0.54 8.12 -51.93 -0.42 0.12 16 20 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 21 H 0.06 0.83 5.62 -51.93 -0.29 0.54 16 22 H 0.08 1.09 6.37 -51.93 -0.33 0.76 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 28 H 0.06 1.21 6.59 -51.93 -0.34 0.87 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.02 0.50 5.59 -51.93 -0.29 0.21 16 31 H 0.01 0.37 5.96 -51.92 -0.31 0.06 16 32 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 33 H 0.07 0.92 7.76 -51.93 -0.40 0.51 16 34 H 0.09 1.51 6.46 -51.93 -0.34 1.18 16 35 H 0.09 1.52 7.33 -51.93 -0.38 1.14 16 36 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 LS Contribution 274.50 15.07 4.14 4.14 Total: -1.00 -31.79 274.50 -6.18 -37.96 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -6.06 Total: -3.51 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 0.03 Total: -21.32 kcal Atomic # 7 Polarization: -28.73 SS G_CDS: 0.77 Total: -27.95 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.38 Total: -7.53 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.67 Total: 18.21 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.79 -6.18 -37.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.090 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds