Wall clock time and date at job start Mon Mar 30 2020 03:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47029 * 2 1 4 4 C 1.52998 * 109.47000 * 119.99975 * 2 1 3 5 5 C 1.53000 * 109.47156 * 64.54832 * 4 2 1 6 6 C 1.53005 * 113.00252 * 53.91740 * 5 4 2 7 7 C 1.52996 * 109.47321 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47003 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00119 * 0.02562 * 8 7 6 10 10 C 1.37883 * 120.00061 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00010 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 119.99931 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47312 * 89.99531 * 12 10 8 14 14 H 1.48498 * 109.47304 * 209.99987 * 12 10 8 15 15 H 1.48505 * 109.47069 * 329.99555 * 12 10 8 16 16 C 1.54042 * 113.81542 * 282.09461 * 5 4 2 17 17 O 1.44451 * 85.42364 * 223.23353 * 16 5 4 18 18 C 1.44180 * 93.37869 * 24.08928 * 17 16 5 19 19 H 1.08996 * 109.47282 * 50.93667 * 1 2 3 20 20 H 1.08997 * 109.47175 * 290.93964 * 1 2 3 21 21 H 1.09003 * 109.47048 * 170.93823 * 1 2 3 22 22 H 1.09001 * 109.46900 * 239.99976 * 2 1 3 23 23 H 1.09001 * 109.47299 * 60.00220 * 3 2 1 24 24 H 1.09001 * 109.47175 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47408 * 300.00000 * 3 2 1 26 26 H 1.09004 * 109.46872 * 184.54210 * 4 2 1 27 27 H 1.08995 * 109.47572 * 304.54756 * 4 2 1 28 28 H 1.09004 * 109.47088 * 300.00802 * 6 5 4 29 29 H 1.08996 * 109.46643 * 60.00019 * 6 5 4 30 30 H 1.08996 * 109.47319 * 300.00471 * 7 6 5 31 31 H 1.09008 * 109.47210 * 59.99954 * 7 6 5 32 32 H 0.96999 * 119.99771 * 180.02562 * 11 10 8 33 33 H 1.08996 * 113.85949 * 337.34180 * 16 5 4 34 34 H 1.08998 * 113.86430 * 109.04834 * 16 5 4 35 35 H 1.08999 * 113.86351 * 221.76516 * 18 17 16 36 36 H 1.08995 * 113.86553 * 90.05727 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6255 -2.1930 1.1934 6 6 2.0598 -2.8878 -0.0988 7 6 1.6057 -4.3485 -0.0699 8 6 2.0341 -5.0330 -1.3423 9 1 2.5764 -4.4814 -2.0960 10 6 1.7346 -6.3637 -1.5438 11 7 2.1080 -6.9609 -2.6544 12 14 0.7973 -7.3179 -0.2399 13 1 -0.6610 -7.2071 -0.4978 14 1 1.2009 -8.7463 -0.2858 15 1 1.1067 -6.7590 1.1007 16 6 0.1512 -2.4386 1.5664 17 8 0.6514 -3.5578 2.3304 18 6 1.9668 -2.9843 2.4701 19 1 -0.3633 0.6476 -0.7979 20 1 -0.3633 0.3673 0.9598 21 1 -0.3633 -1.0149 -0.1619 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 3.1270 -0.6513 1.2908 27 1 1.6117 -0.2567 2.1373 28 1 1.6068 -2.3836 -0.9524 29 1 3.1454 -2.8461 -0.1864 30 1 2.0584 -4.8529 0.7838 31 1 0.5199 -4.3898 0.0176 32 1 1.8969 -7.8969 -2.7963 33 1 -0.2867 -1.6486 2.1764 34 1 -0.4756 -2.7245 0.7217 35 1 2.7769 -3.7020 2.3407 36 1 2.0844 -2.3613 3.3567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260973968.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:13 Heat of formation + Delta-G solvation = -60.123730 kcal Electronic energy + Delta-G solvation = -15002.456670 eV Core-core repulsion = 12679.243833 eV Total energy + Delta-G solvation = -2323.212837 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.90289 -37.20445 -35.51289 -33.52945 -31.04706 -28.43393 -27.08951 -26.96310 -26.23217 -22.78736 -20.93639 -19.65999 -18.76308 -16.96256 -16.90006 -16.80041 -16.01814 -15.56516 -15.35498 -14.79245 -14.47215 -14.06009 -13.55150 -13.24108 -13.17608 -12.95181 -12.84944 -12.81624 -12.53552 -12.04628 -11.80936 -11.67877 -11.54530 -11.44963 -11.18078 -11.00621 -10.77486 -10.71725 -10.30311 -8.31350 -6.33242 1.31866 1.33573 1.50078 2.34662 2.90585 3.04796 3.31004 3.84835 4.02560 4.17889 4.20514 4.37034 4.44673 4.50470 4.67989 4.72744 4.83423 4.86394 4.90975 4.92131 5.02574 5.07414 5.14911 5.16708 5.29023 5.31807 5.39516 5.47308 5.54376 5.57249 5.61653 5.65756 5.70721 6.29026 6.75545 7.31707 8.85514 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.037080 B = 0.009031 C = 0.008035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.934778 B = 3099.853494 C = 3483.777224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.141 4.141 4 C -0.095 4.095 5 C -0.114 4.114 6 C -0.074 4.074 7 C 0.001 3.999 8 C -0.531 4.531 9 H 0.033 0.967 10 C 0.008 3.992 11 N -0.951 5.951 12 Si 0.944 3.056 13 H -0.270 1.270 14 H -0.282 1.282 15 H -0.253 1.253 16 C 0.043 3.957 17 O -0.411 6.411 18 C 0.037 3.963 19 H 0.055 0.945 20 H 0.068 0.932 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.014 0.986 31 H 0.011 0.989 32 H 0.265 0.735 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 15.850 10.926 19.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 C -0.198 4.198 4 C -0.133 4.133 5 C -0.115 4.115 6 C -0.111 4.111 7 C -0.036 4.036 8 C -0.569 4.569 9 H 0.051 0.949 10 C -0.188 4.188 11 N -0.592 5.592 12 Si 0.768 3.232 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.177 1.177 16 C -0.033 4.033 17 O -0.330 6.330 18 C -0.039 4.039 19 H 0.074 0.926 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.695 15.453 10.928 19.117 hybrid contribution -0.135 -0.921 -0.277 0.971 sum -2.830 14.532 10.650 18.238 Atomic orbital electron populations 1.21985 0.95115 1.01490 1.02295 1.21145 0.96317 0.96631 0.98006 1.21791 1.00888 0.94962 1.02141 1.21632 1.01335 0.91668 0.98628 1.23548 0.95628 0.96823 0.95467 1.21125 0.99806 0.94937 0.95258 1.19454 0.95836 0.94133 0.94184 1.21634 1.35613 0.95868 1.03778 0.94856 1.25906 0.96586 0.98906 0.97445 1.70061 1.49214 1.12330 1.27626 0.85742 0.79203 0.77496 0.80763 1.19510 1.20767 1.17675 1.24363 0.96165 0.88273 0.94521 1.89718 1.26954 1.40009 1.76339 1.24192 0.86285 0.95883 0.97548 0.92577 0.91328 0.93529 0.92746 0.91648 0.92743 0.92689 0.91202 0.89732 0.92352 0.92952 0.96818 0.97053 0.92568 0.87683 0.90642 0.90738 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.02 71.98 0.58 -2.58 16 2 C -0.10 -2.25 2.61 -10.80 -0.03 -2.28 16 3 C -0.14 -2.45 9.18 71.98 0.66 -1.79 16 4 C -0.10 -2.07 4.30 30.59 0.13 -1.94 16 5 C -0.11 -3.36 0.90 -51.48 -0.05 -3.41 16 6 C -0.07 -2.89 4.34 30.59 0.13 -2.76 16 7 C 0.00 0.06 2.76 29.85 0.08 0.14 16 8 C -0.53 -31.90 9.66 25.60 0.25 -31.66 16 9 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 10 C 0.01 0.50 5.47 84.66 0.46 0.96 16 11 N -0.95 -61.65 13.96 21.45 0.30 -61.35 16 12 Si 0.94 47.64 27.47 68.60 1.88 49.52 16 13 H -0.27 -13.16 7.11 99.48 0.71 -12.46 16 14 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.25 -12.44 6.54 99.48 0.65 -11.79 16 16 C 0.04 1.26 5.50 72.30 0.40 1.66 16 17 O -0.41 -14.94 10.87 -148.98 -1.62 -16.55 16 18 C 0.04 1.10 7.75 72.30 0.56 1.66 16 19 H 0.06 1.09 8.12 -2.39 -0.02 1.07 16 20 H 0.07 1.17 8.00 -2.39 -0.02 1.15 16 21 H 0.05 1.13 5.62 -2.39 -0.01 1.12 16 22 H 0.05 1.46 6.37 -2.39 -0.02 1.45 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.08 1.47 8.05 -2.39 -0.02 1.45 16 28 H 0.06 2.31 6.59 -2.38 -0.02 2.29 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.01 0.69 5.59 -2.39 -0.01 0.67 16 31 H 0.01 0.56 5.96 -2.38 -0.01 0.55 16 32 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 33 H 0.11 2.34 7.76 -2.39 -0.02 2.32 16 34 H 0.08 2.43 6.46 -2.39 -0.02 2.42 16 35 H 0.07 2.42 7.33 -2.39 -0.02 2.40 16 36 H 0.11 2.34 8.10 -2.39 -0.02 2.32 16 Total: -1.00 -69.48 274.50 4.72 -64.76 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 0.97 Total: 5.60 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 3.18 Total: -41.99 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.30 Total: -61.35 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.62 Total: -16.55 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.88 Total: 49.52 kcal Total: -69.48 4.72 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260973968.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.638 kcal (2) G-P(sol) polarization free energy of solvation -69.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds