Wall clock time and date at job start Mon Mar 30 2020 03:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46816 * 2 1 4 4 C 1.53000 * 109.47256 * 240.00111 * 2 1 3 5 5 C 1.52997 * 109.46963 * 119.99998 * 2 1 3 6 6 C 1.50700 * 109.52297 * 60.00242 * 5 2 1 7 7 H 1.08004 * 119.99611 * 271.00698 * 6 5 2 8 8 C 1.37870 * 120.00279 * 91.01106 * 6 5 2 9 9 N 1.31527 * 119.99636 * 330.30143 * 8 6 5 10 10 Si 1.86800 * 120.00373 * 150.29873 * 8 6 5 11 11 H 1.48500 * 109.47004 * 90.00044 * 10 8 6 12 12 H 1.48493 * 109.47002 * 209.99936 * 10 8 6 13 13 H 1.48495 * 109.46964 * 330.00237 * 10 8 6 14 14 C 1.53183 * 109.52041 * 299.87357 * 5 2 1 15 15 C 1.53185 * 109.02868 * 183.17843 * 14 5 2 16 16 C 1.53093 * 109.21618 * 56.88724 * 15 14 5 17 17 O 1.42895 * 109.41388 * 302.42130 * 16 15 14 18 18 C 1.42903 * 114.09618 * 61.16037 * 17 16 15 19 19 H 1.08997 * 109.47267 * 300.00282 * 1 2 3 20 20 H 1.09004 * 109.47121 * 60.00322 * 1 2 3 21 21 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46602 * 180.02562 * 3 2 1 23 23 H 1.08995 * 109.47264 * 299.99631 * 3 2 1 24 24 H 1.08994 * 109.46928 * 59.99900 * 3 2 1 25 25 H 1.08997 * 109.47039 * 299.99931 * 4 2 1 26 26 H 1.08995 * 109.47376 * 60.00031 * 4 2 1 27 27 H 1.08993 * 109.47052 * 180.02562 * 4 2 1 28 28 H 0.96997 * 119.99603 * 180.02562 * 9 8 6 29 29 H 1.08992 * 109.54567 * 302.98175 * 14 5 2 30 30 H 1.08997 * 109.54257 * 63.25132 * 14 5 2 31 31 H 1.09001 * 109.47006 * 296.97903 * 15 14 5 32 32 H 1.09005 * 109.57507 * 176.86200 * 15 14 5 33 33 H 1.09004 * 109.47908 * 182.44101 * 16 15 14 34 34 H 1.08994 * 109.47689 * 62.40793 * 16 15 14 35 35 H 1.09004 * 109.48421 * 178.85841 * 18 17 16 36 36 H 1.09002 * 109.48176 * 58.82163 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 6 1.5383 -2.1423 1.2504 7 1 0.5872 -2.3788 1.7041 8 6 2.2935 -3.1405 0.6723 9 7 3.0890 -2.8621 -0.3375 10 14 2.1871 -4.8882 1.3232 11 1 1.1168 -5.6212 0.6004 12 1 3.4866 -5.5749 1.1122 13 1 1.8730 -4.8576 2.7742 14 6 1.5326 0.0018 2.5007 15 6 2.1139 -0.6813 3.7424 16 6 3.6420 -0.6808 3.6490 17 8 4.0446 -1.3420 2.4479 18 6 3.5709 -0.7191 1.2521 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 3.1300 1.4425 -0.0005 23 1 1.6767 1.9564 -0.8900 24 1 1.6766 1.9564 0.8899 25 1 1.6768 -1.7489 -1.2493 26 1 1.6768 -0.2074 -2.1392 27 1 3.1300 -0.7216 -1.2490 28 1 3.6200 -3.5644 -0.7444 29 1 1.8528 1.0433 2.4751 30 1 0.4441 -0.0457 2.5331 31 1 1.7525 -1.7083 3.7948 32 1 1.8034 -0.1400 4.6362 33 1 4.0590 -1.2043 4.5094 34 1 4.0050 0.3468 3.6375 35 1 3.9367 -1.2702 0.3857 36 1 3.9331 0.3081 1.2093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261036094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:46 Heat of formation + Delta-G solvation = -61.720251 kcal Electronic energy + Delta-G solvation = -16166.940450 eV Core-core repulsion = 13843.658382 eV Total energy + Delta-G solvation = -2323.282068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78543 -37.48529 -34.34222 -33.49853 -30.50722 -28.42442 -27.74321 -26.52247 -25.03287 -23.80862 -21.01389 -19.42707 -17.66490 -16.93045 -16.60066 -16.09448 -15.47976 -15.02687 -14.87109 -14.35264 -14.15055 -13.98228 -13.32073 -13.04666 -12.85283 -12.83130 -12.53064 -12.31988 -12.28152 -12.00152 -11.88380 -11.58072 -11.48248 -11.25061 -10.83717 -10.64005 -10.27348 -9.76234 -9.61769 -7.91663 -5.85896 1.41149 1.49568 1.56691 2.55179 3.24813 3.53640 4.27104 4.32447 4.35296 4.47968 4.54973 4.62021 4.67318 4.80391 4.89471 5.02062 5.05222 5.15096 5.18211 5.19974 5.28098 5.34424 5.38902 5.57814 5.59624 5.60691 5.73288 5.87979 5.93062 6.05269 6.26176 6.47935 6.58655 6.91312 7.07288 7.68910 8.99775 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.025520 B = 0.018474 C = 0.013970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.924103 B = 1515.287861 C = 2003.846771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.097 4.097 5 C 0.048 3.952 6 C -0.500 4.500 7 H 0.038 0.962 8 C 0.052 3.948 9 N -0.865 5.865 10 Si 0.907 3.093 11 H -0.288 1.288 12 H -0.293 1.293 13 H -0.283 1.283 14 C -0.106 4.106 15 C -0.140 4.140 16 C 0.057 3.943 17 O -0.404 6.404 18 C 0.060 3.940 19 H 0.048 0.952 20 H 0.043 0.957 21 H 0.038 0.962 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.008 0.992 27 H 0.036 0.964 28 H 0.252 0.748 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.115 0.885 36 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 6.590 3.159 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.058 4.058 3 C -0.197 4.197 4 C -0.154 4.154 5 C 0.048 3.952 6 C -0.537 4.537 7 H 0.056 0.944 8 C -0.149 4.149 9 N -0.503 5.503 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.219 1.219 13 H -0.208 1.208 14 C -0.143 4.143 15 C -0.178 4.178 16 C -0.019 4.019 17 O -0.323 6.323 18 C -0.016 4.016 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -0.997 6.334 3.029 7.091 hybrid contribution -0.121 -1.090 0.263 1.127 sum -1.119 5.245 3.291 6.292 Atomic orbital electron populations 1.21655 0.95775 1.00392 0.99660 1.20643 0.94896 0.93410 0.96877 1.22009 1.00113 0.96695 1.00892 1.21751 0.99609 1.00475 0.93555 1.18746 0.92242 0.93461 0.90781 1.20747 1.04301 0.92525 1.36142 0.94409 1.25028 0.96365 0.99804 0.93677 1.70317 1.28530 1.32778 1.18676 0.86393 0.76484 0.84227 0.79304 1.21432 1.21895 1.20843 1.21694 0.99453 0.97594 0.95558 1.22007 0.96435 1.01049 0.98297 1.22562 0.94655 0.96581 0.88135 1.87853 1.74434 1.55227 1.14780 1.23133 0.96464 0.94327 0.87627 0.93341 0.93816 0.94269 0.93930 0.93083 0.92594 0.91647 0.97274 0.94507 0.93747 0.92854 0.93089 0.93206 0.90585 0.89395 0.93614 0.86755 0.96913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 7.88 71.98 0.57 -3.94 16 2 C -0.06 -2.37 0.35 -52.18 -0.02 -2.39 16 3 C -0.14 -4.89 7.77 71.98 0.56 -4.33 16 4 C -0.10 -4.35 6.67 71.98 0.48 -3.87 16 5 C 0.05 2.15 0.06 -52.84 0.00 2.15 16 6 C -0.50 -25.46 4.82 25.60 0.12 -25.34 16 7 H 0.04 2.00 7.97 -2.91 -0.02 1.98 16 8 C 0.05 2.72 4.19 84.65 0.36 3.07 16 9 N -0.86 -45.54 7.17 21.45 0.15 -45.39 16 10 Si 0.91 43.70 29.63 68.60 2.03 45.74 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 12 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 13 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 14 C -0.11 -4.10 4.08 30.72 0.13 -3.98 16 15 C -0.14 -5.21 5.87 30.69 0.18 -5.03 16 16 C 0.06 2.16 6.84 72.01 0.49 2.65 16 17 O -0.40 -19.13 10.28 -148.98 -1.53 -20.66 16 18 C 0.06 2.81 4.29 72.01 0.31 3.12 16 19 H 0.05 1.70 6.51 -2.39 -0.02 1.69 16 20 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.04 1.66 7.22 -2.39 -0.02 1.64 16 22 H 0.04 1.51 6.38 -2.39 -0.02 1.50 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 1.79 6.37 -2.39 -0.02 1.77 16 25 H 0.06 3.33 5.37 -2.39 -0.01 3.32 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.04 1.73 6.03 -2.39 -0.01 1.71 16 28 H 0.25 13.10 8.31 -92.71 -0.77 12.33 16 29 H 0.05 1.88 6.28 -2.39 -0.02 1.87 16 30 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 31 H 0.05 2.11 7.39 -2.39 -0.02 2.09 16 32 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.12 5.99 4.07 -2.39 -0.01 5.98 16 36 H 0.01 0.56 6.31 -2.39 -0.02 0.54 16 Total: -1.00 -54.20 254.90 4.87 -49.33 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.05 Total: 8.86 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 3.17 Total: -37.88 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.15 Total: -45.39 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.53 Total: -20.66 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.74 kcal Total: -54.20 4.87 -49.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261036094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.389 kcal (2) G-P(sol) polarization free energy of solvation -54.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds