Wall clock time and date at job start Mon Mar 30 2020 02:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46778 * 2 1 4 4 C 1.50698 * 109.46992 * 120.00016 * 2 1 3 5 5 H 1.08003 * 119.99859 * 120.00302 * 4 2 1 6 6 C 1.37874 * 120.00221 * 300.00139 * 4 2 1 7 7 N 1.31516 * 120.00023 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46723 * 60.00143 * 8 6 4 10 10 H 1.48493 * 109.47274 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46864 * 300.00491 * 8 6 4 12 12 N 1.46492 * 109.47248 * 240.00219 * 2 1 3 13 13 C 1.46012 * 118.53786 * 120.00027 * 12 2 1 14 14 C 1.52978 * 110.04790 * 161.86253 * 13 12 2 15 15 N 1.47192 * 108.73100 * 50.28845 * 14 13 12 16 16 C 1.46906 * 110.99596 * 54.37226 * 15 14 13 17 17 C 1.46905 * 110.17753 * 291.00941 * 15 14 13 18 18 C 1.33717 * 118.54050 * 300.02307 * 12 2 1 19 19 O 1.21281 * 118.62354 * 1.66003 * 18 12 2 20 20 H 1.09005 * 109.47249 * 59.99685 * 1 2 3 21 21 H 1.09008 * 109.47137 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47351 * 299.99413 * 1 2 3 23 23 H 0.96997 * 119.99794 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.37787 * 41.68442 * 13 12 2 25 25 H 1.09010 * 109.37683 * 282.03640 * 13 12 2 26 26 H 1.08998 * 109.59214 * 290.52160 * 14 13 12 27 27 H 1.08995 * 109.72545 * 170.14041 * 14 13 12 28 28 H 1.08992 * 109.47459 * 59.99863 * 16 15 14 29 29 H 1.09004 * 109.47040 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.47033 * 299.99966 * 16 15 14 31 31 H 1.08992 * 109.39046 * 170.45269 * 17 15 14 32 32 H 1.09000 * 109.38073 * 290.13934 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1961 13 6 2.8556 0.0496 -2.1359 14 6 3.6139 -0.9229 -3.0411 15 7 2.6563 -1.8876 -3.6058 16 6 1.5500 -1.1967 -4.2818 17 6 2.1543 -2.7794 -2.5518 18 6 1.6772 -1.9704 -1.3790 19 8 0.9523 -2.5006 -0.5639 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 0.7081 1.1607 3.4844 24 1 3.5693 0.6592 -1.5819 25 1 2.2273 0.6975 -2.7473 26 1 4.3665 -1.4537 -2.4580 27 1 4.0978 -0.3731 -3.8482 28 1 1.9454 -0.5825 -5.0907 29 1 0.8570 -1.9328 -4.6894 30 1 1.0265 -0.5624 -3.5665 31 1 1.3275 -3.3722 -2.9428 32 1 2.9548 -3.4457 -2.2302 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:01 Heat of formation + Delta-G solvation = -14.404334 kcal Electronic energy + Delta-G solvation = -15116.166257 eV Core-core repulsion = 12691.395618 eV Total energy + Delta-G solvation = -2424.770639 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.08544 -36.76055 -34.88088 -32.57807 -29.84026 -28.98293 -27.35635 -25.10704 -24.21491 -22.53014 -20.69490 -17.83837 -16.70278 -16.24608 -15.40159 -15.10000 -14.83821 -14.53638 -13.98954 -13.20821 -12.78080 -12.60375 -12.32620 -11.98672 -11.55299 -11.42687 -11.20246 -11.10299 -10.96130 -10.70199 -10.38944 -10.31752 -9.96723 -9.58742 -8.92325 -8.36873 -7.82979 -7.56737 -5.97306 -4.00326 3.35794 3.39499 3.43642 3.52016 3.79360 4.21998 4.50049 4.97098 5.19384 5.23808 5.30738 5.35298 5.62871 5.70231 5.74441 5.88887 5.94812 6.02764 6.10693 6.77692 6.89871 7.00244 7.01821 7.18618 7.25303 7.76455 7.89203 8.12532 8.23940 8.63730 8.96538 9.19102 9.63330 11.08544 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046629 B = 0.009976 C = 0.009682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.345707 B = 2806.105242 C = 2891.335265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.268 3.732 3 H 0.040 0.960 4 C -0.497 4.497 5 H 0.055 0.945 6 C 0.059 3.941 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.079 3.921 14 C 0.037 3.963 15 N -0.532 5.532 16 C 0.014 3.986 17 C 0.035 3.965 18 C 0.475 3.525 19 O -0.528 6.528 20 H 0.000 1.000 21 H 0.055 0.945 22 H 0.088 0.912 23 H 0.261 0.739 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.100 0.900 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.895 -1.367 -11.725 12.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.168 3.832 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.073 0.927 6 C -0.141 4.141 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.327 5.327 13 C -0.046 4.046 14 C -0.092 4.092 15 N -0.256 5.256 16 C -0.134 4.134 17 C -0.096 4.096 18 C 0.260 3.740 19 O -0.404 6.404 20 H 0.019 0.981 21 H 0.074 0.926 22 H 0.107 0.893 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.672 -1.824 -11.507 12.215 hybrid contribution -0.061 0.186 1.435 1.448 sum 3.612 -1.638 -10.071 10.824 Atomic orbital electron populations 1.22148 0.97988 1.01494 0.99627 1.18858 0.91659 0.91905 0.80761 0.94266 1.21181 1.30546 1.11877 0.90000 0.92666 1.24848 0.95271 0.95124 0.98876 1.69863 1.37162 1.23183 1.23561 0.86544 0.78863 0.79970 0.81957 1.20457 1.21319 1.20218 1.47903 1.49495 1.11075 1.24258 1.21931 0.94723 0.95634 0.92355 1.22558 0.95283 0.93798 0.97547 1.62675 1.15669 1.19975 1.27291 1.22500 0.93559 0.98775 0.98609 1.22512 1.01786 0.96048 0.89252 1.20672 0.82301 0.82932 0.88112 1.90690 1.36291 1.68740 1.44672 0.98135 0.92565 0.89310 0.92920 0.90509 0.92576 0.89868 0.89190 0.91238 0.91433 0.94325 0.88134 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 8.87 37.16 0.33 -3.71 16 2 C 0.27 6.93 2.62 -69.09 -0.18 6.75 16 3 H 0.04 1.05 7.84 -51.93 -0.41 0.64 16 4 C -0.50 -14.29 7.47 -34.44 -0.26 -14.54 16 5 H 0.06 1.65 7.43 -52.48 -0.39 1.26 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.90 -26.18 11.32 55.43 0.63 -25.55 16 8 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 12 N -0.59 -12.69 2.60 -168.32 -0.44 -13.13 16 13 C 0.08 1.28 5.54 -4.32 -0.02 1.25 16 14 C 0.04 0.48 6.06 -3.68 -0.02 0.46 16 15 N -0.53 -7.34 5.29 -244.40 -1.29 -8.64 16 16 C 0.01 0.17 8.90 60.07 0.53 0.71 16 17 C 0.04 0.56 5.87 -5.19 -0.03 0.53 16 18 C 0.48 10.22 6.22 -11.67 -0.07 10.14 16 19 O -0.53 -13.82 13.61 5.56 0.08 -13.74 16 20 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 21 H 0.06 1.56 5.92 -51.92 -0.31 1.25 16 22 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 25 H 0.06 0.84 6.88 -51.92 -0.36 0.49 16 26 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.78 8.05 -51.93 -0.42 0.37 16 30 H 0.04 0.57 5.86 -51.93 -0.30 0.27 16 31 H 0.10 1.50 7.97 -51.93 -0.41 1.09 16 32 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 253.60 15.07 3.82 3.82 Total: -1.00 -32.19 253.60 -6.62 -38.81 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.58 Total: -2.21 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 0.18 Total: 3.20 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -1.10 Total: -47.32 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.74 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.19 -6.62 -38.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.408 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds