Wall clock time and date at job start Mon Mar 30 2020 02:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46778 * 2 1 4 4 C 1.50698 * 109.46992 * 120.00016 * 2 1 3 5 5 H 1.08003 * 119.99859 * 120.00302 * 4 2 1 6 6 C 1.37874 * 120.00221 * 300.00139 * 4 2 1 7 7 N 1.31516 * 120.00023 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46723 * 60.00143 * 8 6 4 10 10 H 1.48493 * 109.47274 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46864 * 300.00491 * 8 6 4 12 12 N 1.46492 * 109.47248 * 240.00219 * 2 1 3 13 13 C 1.46012 * 118.53786 * 120.00027 * 12 2 1 14 14 C 1.52978 * 110.04790 * 161.86253 * 13 12 2 15 15 N 1.47192 * 108.73100 * 50.28845 * 14 13 12 16 16 C 1.46906 * 110.99596 * 54.37226 * 15 14 13 17 17 C 1.46905 * 110.17753 * 291.00941 * 15 14 13 18 18 C 1.33717 * 118.54050 * 300.02307 * 12 2 1 19 19 O 1.21281 * 118.62354 * 1.66003 * 18 12 2 20 20 H 1.09005 * 109.47249 * 59.99685 * 1 2 3 21 21 H 1.09008 * 109.47137 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47351 * 299.99413 * 1 2 3 23 23 H 0.96997 * 119.99794 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.37787 * 41.68442 * 13 12 2 25 25 H 1.09010 * 109.37683 * 282.03640 * 13 12 2 26 26 H 1.08998 * 109.59214 * 290.52160 * 14 13 12 27 27 H 1.08995 * 109.72545 * 170.14041 * 14 13 12 28 28 H 1.08992 * 109.47459 * 59.99863 * 16 15 14 29 29 H 1.09004 * 109.47040 * 180.02562 * 16 15 14 30 30 H 1.09000 * 109.47033 * 299.99966 * 16 15 14 31 31 H 1.08992 * 109.39046 * 170.45269 * 17 15 14 32 32 H 1.09000 * 109.38073 * 290.13934 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.8063 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0076 12 7 2.0184 -0.6905 -1.1961 13 6 2.8556 0.0496 -2.1359 14 6 3.6139 -0.9229 -3.0411 15 7 2.6563 -1.8876 -3.6058 16 6 1.5500 -1.1967 -4.2818 17 6 2.1543 -2.7794 -2.5518 18 6 1.6772 -1.9704 -1.3790 19 8 0.9523 -2.5006 -0.5639 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 0.7081 1.1607 3.4844 24 1 3.5693 0.6592 -1.5819 25 1 2.2273 0.6975 -2.7473 26 1 4.3665 -1.4537 -2.4580 27 1 4.0978 -0.3731 -3.8482 28 1 1.9454 -0.5825 -5.0907 29 1 0.8570 -1.9328 -4.6894 30 1 1.0265 -0.5624 -3.5665 31 1 1.3275 -3.3722 -2.9428 32 1 2.9548 -3.4457 -2.2302 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261060669.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:00 Heat of formation + Delta-G solvation = -38.426587 kcal Electronic energy + Delta-G solvation = -15117.207940 eV Core-core repulsion = 12691.395618 eV Total energy + Delta-G solvation = -2425.812322 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.60476 -38.22408 -36.72354 -34.51939 -31.54881 -30.50169 -28.60815 -27.31664 -25.52406 -24.16075 -22.33965 -19.34265 -18.64731 -17.80510 -17.15497 -16.57818 -16.27148 -16.12216 -15.57480 -14.79390 -14.60063 -14.21632 -13.81338 -13.49064 -13.14859 -13.01370 -12.82468 -12.61869 -12.50390 -12.47256 -12.27803 -12.18466 -11.92340 -11.46094 -10.82650 -10.49245 -9.40338 -9.18546 -8.15637 -6.26013 1.33872 1.38317 1.44996 1.87109 2.26097 2.43161 3.02298 3.11568 3.66572 4.04069 4.08654 4.16801 4.46462 4.57403 4.62531 4.72727 4.74316 4.81426 4.89742 4.98977 5.05446 5.11452 5.25373 5.55884 5.76287 5.79458 5.93083 6.02706 6.16385 6.71805 6.92469 7.35236 7.56734 8.88226 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046629 B = 0.009976 C = 0.009682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.345707 B = 2806.105242 C = 2891.335265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.270 3.730 3 H 0.027 0.973 4 C -0.512 4.512 5 H 0.036 0.964 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.286 1.286 12 N -0.598 5.598 13 C 0.072 3.928 14 C 0.044 3.956 15 N -0.521 5.521 16 C 0.013 3.987 17 C 0.049 3.951 18 C 0.465 3.535 19 O -0.586 6.586 20 H 0.020 0.980 21 H 0.034 0.966 22 H 0.064 0.936 23 H 0.264 0.736 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.013 0.987 31 H 0.113 0.887 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.193 -1.498 -13.305 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.168 3.832 3 H 0.045 0.955 4 C -0.551 4.551 5 H 0.055 0.945 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.212 1.212 12 N -0.330 5.330 13 C -0.052 4.052 14 C -0.084 4.084 15 N -0.244 5.244 16 C -0.135 4.135 17 C -0.082 4.082 18 C 0.252 3.748 19 O -0.466 6.466 20 H 0.039 0.961 21 H 0.053 0.947 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.148 0.852 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.032 0.968 31 H 0.131 0.869 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.006 -1.930 -13.134 14.187 hybrid contribution -0.477 0.271 1.870 1.949 sum 4.528 -1.659 -11.264 12.253 Atomic orbital electron populations 1.21931 0.98610 0.99876 0.99365 1.18534 0.91186 0.91364 0.82119 0.95470 1.21344 1.30677 1.11426 0.91671 0.94528 1.25592 0.95531 0.95885 1.01574 1.69958 1.37627 1.23993 1.24239 0.85644 0.78956 0.78250 0.78958 1.19163 1.20077 1.21170 1.47894 1.49847 1.11473 1.23742 1.22268 0.94587 0.96381 0.92003 1.22667 0.94583 0.93140 0.98046 1.62768 1.15867 1.20091 1.25693 1.22597 0.93335 0.98969 0.98572 1.22468 1.02541 0.95746 0.87487 1.21768 0.81181 0.82859 0.88967 1.90656 1.38916 1.69914 1.47138 0.96144 0.94691 0.91683 0.92724 0.90559 0.91076 0.89958 0.85157 0.88313 0.90494 0.96799 0.86877 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 8.87 71.98 0.64 -6.84 16 2 C 0.27 14.21 2.62 44.25 0.12 14.32 16 3 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 4 C -0.51 -30.08 7.47 25.60 0.19 -29.89 16 5 H 0.04 2.23 7.43 -2.91 -0.02 2.21 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -54.29 11.32 21.45 0.24 -54.05 16 8 Si 0.96 46.49 29.54 68.60 2.03 48.52 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 12 N -0.60 -25.39 2.60 -805.42 -2.09 -27.49 16 13 C 0.07 2.17 5.54 86.46 0.48 2.65 16 14 C 0.04 0.99 6.06 86.24 0.52 1.51 16 15 N -0.52 -12.56 5.29 -927.16 -4.91 -17.47 16 16 C 0.01 0.29 8.90 127.69 1.14 1.42 16 17 C 0.05 1.47 5.87 85.42 0.50 1.97 16 18 C 0.47 19.93 6.22 87.68 0.55 20.48 16 19 O -0.59 -31.47 13.61 -3.03 -0.04 -31.51 16 20 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 21 H 0.03 1.99 5.92 -2.38 -0.01 1.98 16 22 H 0.06 3.77 6.07 -2.39 -0.01 3.76 16 23 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 24 H 0.08 2.32 8.09 -2.39 -0.02 2.31 16 25 H 0.07 1.96 6.88 -2.38 -0.02 1.95 16 26 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 27 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.54 8.05 -2.38 -0.02 1.52 16 30 H 0.01 0.37 5.86 -2.39 -0.01 0.35 16 31 H 0.11 3.14 7.97 -2.39 -0.02 3.12 16 32 H 0.12 3.20 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -71.06 253.60 0.90 -70.16 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.10 Total: 5.03 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 4.58 Total: 6.81 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -6.76 Total: -99.01 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.04 Total: -31.51 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -71.06 0.90 -70.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060669.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.733 kcal (2) G-P(sol) polarization free energy of solvation -71.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds