Wall clock time and date at job start Mon Mar 30 2020 02:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47579 * 2 1 4 4 C 1.45643 * 117.70656 * 269.73759 * 3 2 1 5 5 C 1.52799 * 110.88260 * 201.75515 * 4 3 2 6 6 H 1.08992 * 109.52964 * 73.24005 * 5 4 3 7 7 C 1.52999 * 109.83050 * 193.80305 * 5 4 3 8 8 N 1.47271 * 108.30289 * 313.61040 * 5 4 3 9 9 C 1.36939 * 121.35184 * 241.36267 * 8 5 4 10 10 H 1.08003 * 120.00288 * 324.11273 * 9 8 5 11 11 C 1.38811 * 119.99999 * 144.10923 * 9 8 5 12 12 N 1.31620 * 120.00232 * 159.01508 * 11 9 8 13 13 Si 1.86803 * 119.99872 * 339.00587 * 11 9 8 14 14 H 1.48500 * 109.46728 * 95.51491 * 13 11 9 15 15 H 1.48499 * 109.47268 * 215.51358 * 13 11 9 16 16 H 1.48494 * 109.47066 * 335.51516 * 13 11 9 17 17 C 1.47043 * 117.29679 * 61.34475 * 8 5 4 18 18 C 1.33384 * 117.70324 * 89.99843 * 3 2 1 19 19 O 1.21282 * 118.48852 * 355.64121 * 18 3 2 20 20 H 1.09003 * 109.47189 * 299.99943 * 1 2 3 21 21 H 1.09004 * 109.47318 * 59.99750 * 1 2 3 22 22 H 1.08996 * 109.47496 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47189 * 240.00057 * 2 1 3 24 24 H 1.08997 * 109.46901 * 120.00789 * 2 1 3 25 25 H 1.09005 * 109.21804 * 322.25798 * 4 3 2 26 26 H 1.09010 * 109.21801 * 81.58651 * 4 3 2 27 27 H 1.08999 * 109.47311 * 178.93990 * 7 5 4 28 28 H 1.08997 * 109.47187 * 298.94332 * 7 5 4 29 29 H 1.09001 * 109.47094 * 58.93960 * 7 5 4 30 30 H 0.96994 * 120.00291 * 180.02562 * 12 11 9 31 31 H 1.09001 * 109.57113 * 197.43809 * 17 8 5 32 32 H 1.09010 * 109.66663 * 77.13774 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2497 2.0176 -1.2894 5 6 3.2238 3.1869 -1.1527 6 1 4.2322 2.8045 -0.9946 7 6 3.1890 4.0424 -2.4207 8 7 2.8128 3.9982 0.0056 9 6 2.4447 5.3094 -0.1376 10 1 2.9435 5.9342 -0.8638 11 6 1.4303 5.8355 0.6505 12 7 1.3429 7.1367 0.8286 13 14 0.1891 4.6969 1.4582 14 1 0.6190 4.4028 2.8488 15 1 -1.1431 5.3525 1.4800 16 1 0.1049 3.4302 0.6877 17 6 2.8134 3.3432 1.3220 18 6 2.2251 1.9658 1.1809 19 8 1.9246 1.3591 2.1872 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8932 -0.5139 0.8899 25 1 2.6621 1.2844 -1.9826 26 1 1.3026 2.3881 -1.6818 27 1 3.8716 4.8848 -2.3095 28 1 3.4937 3.4381 -3.2752 29 1 2.1768 4.4136 -2.5808 30 1 0.6344 7.5043 1.3796 31 1 2.2134 3.9266 2.0204 32 1 3.8354 3.2672 1.6936 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:56 Heat of formation + Delta-G solvation = -27.144210 kcal Electronic energy + Delta-G solvation = -15247.130949 eV Core-core repulsion = 12821.807867 eV Total energy + Delta-G solvation = -2425.323081 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.54149 -38.31425 -36.69563 -34.20656 -32.56572 -31.78406 -28.45380 -27.25057 -25.39790 -24.27187 -21.97918 -19.88745 -18.84589 -17.92298 -17.71849 -16.96510 -16.58878 -15.99649 -15.25958 -14.80856 -14.77142 -14.44849 -14.25259 -13.74195 -13.47820 -13.30312 -12.95168 -12.73794 -12.49570 -12.41496 -12.12120 -12.01841 -11.84591 -11.61839 -11.07875 -10.76363 -9.76566 -8.90630 -8.26021 -5.63013 1.20088 1.31454 1.35837 1.50159 2.03020 2.31004 2.89806 3.15641 3.57714 3.98906 4.10326 4.23047 4.33290 4.36340 4.44133 4.50733 4.58575 4.64974 4.76018 4.92107 4.94653 5.03961 5.18819 5.30633 5.48858 5.60421 5.84716 6.16079 6.37162 6.76421 7.05769 7.49868 7.95614 8.92530 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.029163 B = 0.015805 C = 0.012463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.897189 B = 1771.143299 C = 2246.199412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.595 5.595 4 C 0.097 3.903 5 C 0.145 3.855 6 H 0.067 0.933 7 C -0.124 4.124 8 N -0.615 5.615 9 C -0.234 4.234 10 H 0.078 0.922 11 C -0.009 4.009 12 N -0.940 5.940 13 Si 0.914 3.086 14 H -0.298 1.298 15 H -0.306 1.306 16 H -0.263 1.263 17 C 0.112 3.888 18 C 0.503 3.497 19 O -0.600 6.600 20 H 0.018 0.982 21 H 0.058 0.942 22 H 0.093 0.907 23 H 0.120 0.880 24 H 0.069 0.931 25 H 0.120 0.880 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.262 0.738 31 H 0.066 0.934 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -13.684 -7.792 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.325 5.325 4 C -0.026 4.026 5 C 0.041 3.959 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.342 5.342 9 C -0.363 4.363 10 H 0.096 0.904 11 C -0.206 4.206 12 N -0.585 5.585 13 Si 0.745 3.255 14 H -0.227 1.227 15 H -0.234 1.234 16 H -0.187 1.187 17 C -0.016 4.016 18 C 0.291 3.709 19 O -0.483 6.483 20 H 0.037 0.963 21 H 0.077 0.923 22 H 0.112 0.888 23 H 0.138 0.862 24 H 0.088 0.912 25 H 0.138 0.862 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.135 -13.838 -7.274 15.779 hybrid contribution -1.083 0.158 1.087 1.543 sum 1.052 -13.680 -6.187 15.051 Atomic orbital electron populations 1.22060 0.96169 1.03074 1.00651 1.21748 0.94635 0.81713 1.04284 1.47372 1.63740 1.15228 1.06162 1.22236 1.00472 0.96629 0.83292 1.21254 0.96086 0.90385 0.88204 0.91519 1.21654 1.01995 0.99382 0.95186 1.44665 1.79040 1.09430 1.01052 1.18729 1.11974 0.84834 1.20809 0.90447 1.25804 0.99008 0.95623 1.00122 1.69899 1.34602 1.12106 1.41852 0.86386 0.80452 0.80448 0.78213 1.22655 1.23443 1.18712 1.21356 1.00594 0.89189 0.90437 1.20885 0.77586 0.89014 0.83398 1.90603 1.54592 1.65642 1.37420 0.96304 0.92285 0.88809 0.86243 0.91205 0.86163 0.92742 0.93198 0.88890 0.93483 0.92809 0.91606 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 10.23 71.98 0.74 -3.59 16 2 C 0.10 2.60 5.88 86.38 0.51 3.11 16 3 N -0.59 -20.22 2.81 -826.75 -2.32 -22.54 16 4 C 0.10 2.76 5.92 86.47 0.51 3.27 16 5 C 0.15 4.77 3.54 44.78 0.16 4.93 16 6 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 7 C -0.12 -3.66 8.07 71.98 0.58 -3.08 16 8 N -0.61 -27.36 2.62 -679.96 -1.78 -29.14 16 9 C -0.23 -12.35 8.88 84.03 0.75 -11.61 16 10 H 0.08 4.29 6.74 -2.91 -0.02 4.27 16 11 C -0.01 -0.50 5.30 84.86 0.45 -0.05 16 12 N -0.94 -57.58 13.97 21.65 0.30 -57.27 16 13 Si 0.91 48.33 24.46 68.60 1.68 50.01 16 14 H -0.30 -16.33 6.70 99.48 0.67 -15.66 16 15 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 16 H -0.26 -13.53 6.32 99.48 0.63 -12.90 16 17 C 0.11 5.07 5.49 85.45 0.47 5.54 16 18 C 0.50 21.53 6.06 87.79 0.53 22.07 16 19 O -0.60 -28.71 16.25 -3.03 -0.05 -28.76 16 20 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.12 2.07 7.80 -2.39 -0.02 2.05 16 24 H 0.07 2.04 7.23 -2.39 -0.02 2.02 16 25 H 0.12 2.20 7.84 -2.38 -0.02 2.18 16 26 H 0.05 1.68 8.06 -2.38 -0.02 1.66 16 27 H 0.05 1.62 7.27 -2.39 -0.02 1.60 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.57 7.82 -2.39 -0.02 1.55 16 30 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.07 3.40 3.84 -2.39 -0.01 3.39 16 32 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 Total: -1.00 -70.24 253.36 3.50 -66.74 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: 0.98 Total: 0.37 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 4.69 Total: 20.60 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.80 Total: -108.96 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.68 Total: 50.01 kcal Total: -70.24 3.50 -66.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.599 kcal (2) G-P(sol) polarization free energy of solvation -70.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds