Wall clock time and date at job start Mon Mar 30 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47240 * 2 1 4 4 C 1.45650 * 117.70602 * 90.00153 * 3 2 1 5 5 C 1.52989 * 110.77430 * 158.09766 * 4 3 2 6 6 H 1.09004 * 109.72101 * 287.05437 * 5 4 3 7 7 C 1.52994 * 109.75458 * 166.41908 * 5 4 3 8 8 N 1.47269 * 108.18640 * 46.72475 * 5 4 3 9 9 C 1.36940 * 121.35179 * 118.46961 * 8 5 4 10 10 H 1.08003 * 119.99921 * 333.79868 * 9 8 5 11 11 C 1.38815 * 119.99959 * 153.79557 * 9 8 5 12 12 N 1.31619 * 119.99825 * 335.51987 * 11 9 8 13 13 Si 1.86792 * 120.00072 * 155.52235 * 11 9 8 14 14 H 1.48501 * 109.47429 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47297 * 300.00000 * 13 11 9 16 16 H 1.48498 * 109.47175 * 60.00103 * 13 11 9 17 17 C 1.47047 * 117.29426 * 298.74647 * 8 5 4 18 18 C 1.33384 * 117.70546 * 269.97923 * 3 2 1 19 19 O 1.21280 * 118.48766 * 4.32023 * 18 3 2 20 20 H 1.08998 * 109.47406 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46964 * 299.99847 * 1 2 3 22 22 H 1.09000 * 109.47098 * 59.99724 * 1 2 3 23 23 H 1.09000 * 109.46964 * 240.00153 * 2 1 3 24 24 H 1.09000 * 109.47098 * 120.00276 * 2 1 3 25 25 H 1.08999 * 109.21404 * 37.76605 * 4 3 2 26 26 H 1.08998 * 109.18206 * 278.41079 * 4 3 2 27 27 H 1.09001 * 109.47480 * 301.24827 * 7 5 4 28 28 H 1.08997 * 109.47157 * 61.25193 * 7 5 4 29 29 H 1.09002 * 109.47082 * 181.24934 * 7 5 4 30 30 H 0.97008 * 120.00158 * 354.13463 * 12 11 9 31 31 H 1.09001 * 109.56759 * 162.31064 * 17 8 5 32 32 H 1.09000 * 109.56637 * 282.66272 * 17 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2441 2.0196 1.2895 5 6 3.2230 3.1874 1.1529 6 1 4.2316 2.8054 0.9950 7 6 3.1876 4.0428 2.4208 8 7 2.8119 3.9986 -0.0055 9 6 2.4432 5.3096 0.1376 10 1 2.0423 5.6582 1.0779 11 6 2.5846 6.1904 -0.9259 12 7 3.4714 5.9479 -1.8678 13 14 1.5163 7.7198 -1.0203 14 1 1.8606 8.4895 -2.2428 15 1 0.0864 7.3225 -1.0713 16 1 1.7531 8.5638 0.1783 17 6 2.8076 3.3418 -1.3212 18 6 2.2255 1.9657 -1.1809 19 8 1.9261 1.3587 -2.1873 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.6539 1.2875 1.9854 26 1 1.2951 2.3904 1.6766 27 1 2.1752 4.4138 2.5808 28 1 3.4925 3.4388 3.2753 29 1 3.8700 4.8856 2.3097 30 1 4.0840 5.2013 -1.7766 31 1 2.2042 3.9239 -2.0178 32 1 3.8287 3.2663 -1.6949 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261068585.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:59 Heat of formation + Delta-G solvation = -33.456208 kcal Electronic energy + Delta-G solvation = -15006.886574 eV Core-core repulsion = 12581.289783 eV Total energy + Delta-G solvation = -2425.596790 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.47386 -38.33895 -36.77364 -34.24641 -32.14180 -31.42251 -28.31056 -27.29178 -25.06226 -24.24723 -22.23755 -19.93859 -18.78430 -18.14051 -17.47154 -16.79108 -16.25138 -15.61368 -15.41645 -14.86656 -14.73374 -14.42905 -14.16056 -13.56165 -13.29715 -12.97632 -12.78194 -12.54327 -12.43682 -12.35119 -12.12409 -11.91524 -11.85715 -11.51350 -10.95225 -10.49118 -9.76451 -9.04909 -8.26077 -5.43443 1.50829 1.58871 1.66943 1.84183 2.04404 2.61904 3.12152 3.36556 3.64047 4.00291 4.11207 4.22758 4.32598 4.42213 4.46469 4.50565 4.59524 4.70426 4.77715 4.85369 4.94809 4.98590 5.20233 5.28737 5.43408 5.57212 5.84555 6.29588 6.39927 6.88150 7.09389 7.68521 8.12715 9.00439 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.034689 B = 0.010997 C = 0.009792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.979378 B = 2545.543568 C = 2858.671375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.097 3.903 3 N -0.594 5.594 4 C 0.108 3.892 5 C 0.141 3.859 6 H 0.036 0.964 7 C -0.120 4.120 8 N -0.611 5.611 9 C -0.343 4.343 10 H 0.077 0.923 11 C -0.080 4.080 12 N -0.948 5.948 13 Si 1.111 2.889 14 H -0.298 1.298 15 H -0.284 1.284 16 H -0.268 1.268 17 C 0.151 3.849 18 C 0.505 3.495 19 O -0.600 6.600 20 H 0.090 0.910 21 H 0.063 0.937 22 H 0.024 0.976 23 H 0.064 0.936 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.253 0.747 31 H 0.066 0.934 32 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -9.065 10.667 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.025 4.025 3 N -0.325 5.325 4 C -0.016 4.016 5 C 0.035 3.965 6 H 0.053 0.947 7 C -0.178 4.178 8 N -0.338 5.338 9 C -0.472 4.472 10 H 0.094 0.906 11 C -0.276 4.276 12 N -0.590 5.590 13 Si 0.936 3.064 14 H -0.224 1.224 15 H -0.211 1.211 16 H -0.193 1.193 17 C 0.022 3.978 18 C 0.293 3.707 19 O -0.483 6.483 20 H 0.109 0.891 21 H 0.082 0.918 22 H 0.043 0.957 23 H 0.082 0.918 24 H 0.132 0.868 25 H 0.131 0.869 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.700 -8.018 9.289 12.817 hybrid contribution 0.648 -1.066 0.292 1.281 sum -3.051 -9.084 9.581 13.551 Atomic orbital electron populations 1.22021 0.95332 1.03111 1.01061 1.21742 0.95280 0.81701 1.03801 1.47376 1.64018 1.15073 1.05994 1.22144 1.00229 0.95889 0.83343 1.21137 0.94924 0.91359 0.89036 0.94671 1.21618 1.02003 0.99238 0.94950 1.44561 1.78389 1.08991 1.01812 1.20199 1.39082 0.85450 1.02505 0.90573 1.27195 0.99966 1.04681 0.95729 1.70927 1.18108 1.31093 1.38889 0.82896 0.74474 0.72806 0.76193 1.22396 1.21060 1.19293 1.20689 0.98077 0.88523 0.90480 1.20997 0.77410 0.88950 0.83298 1.90585 1.54544 1.65664 1.37485 0.89091 0.91828 0.95708 0.91758 0.86770 0.86850 0.91735 0.92680 0.89163 0.93814 0.93640 0.91588 0.94354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 10.23 71.98 0.74 -3.25 16 2 C 0.10 2.63 5.88 86.38 0.51 3.14 16 3 N -0.59 -20.83 2.81 -826.87 -2.32 -23.15 16 4 C 0.11 3.17 5.93 86.54 0.51 3.68 16 5 C 0.14 5.14 3.56 44.84 0.16 5.30 16 6 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 7 C -0.12 -3.75 8.00 71.98 0.58 -3.18 16 8 N -0.61 -29.48 2.88 -680.27 -1.96 -31.44 16 9 C -0.34 -18.08 8.62 84.03 0.72 -17.36 16 10 H 0.08 3.83 6.31 -2.91 -0.02 3.81 16 11 C -0.08 -4.45 4.75 84.86 0.40 -4.05 16 12 N -0.95 -57.91 12.61 21.65 0.27 -57.64 16 13 Si 1.11 50.38 29.98 68.60 2.06 52.44 16 14 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 15 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 C 0.15 7.69 4.79 85.33 0.41 8.09 16 18 C 0.51 22.94 7.56 87.68 0.66 23.60 16 19 O -0.60 -30.07 16.25 -3.03 -0.05 -30.12 16 20 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 1.98 7.23 -2.39 -0.02 1.97 16 24 H 0.11 2.12 7.80 -2.39 -0.02 2.10 16 25 H 0.11 2.30 7.84 -2.39 -0.02 2.28 16 26 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 27 H 0.05 1.77 7.19 -2.39 -0.02 1.75 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.04 1.56 7.87 -2.39 -0.02 1.54 16 30 H 0.25 15.75 6.35 -92.70 -0.59 15.16 16 31 H 0.07 3.84 6.90 -2.39 -0.02 3.82 16 32 H 0.04 2.05 7.37 -2.39 -0.02 2.04 16 Total: -1.00 -69.57 258.80 3.97 -65.60 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.27 Total: 8.33 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 4.69 Total: 15.98 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -4.00 Total: -112.23 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.05 Total: -30.12 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.06 Total: 52.44 kcal Total: -69.57 3.97 -65.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261068585.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.147 kcal (2) G-P(sol) polarization free energy of solvation -69.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds