Wall clock time and date at job start Mon Mar 30 2020 03:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.53007 * 109.47208 * 120.00268 * 2 1 3 5 5 C 1.53001 * 109.46745 * 239.99964 * 2 1 3 6 6 C 1.52997 * 109.47004 * 65.52058 * 5 2 1 7 7 C 1.50693 * 110.43659 * 307.02289 * 6 5 2 8 8 H 1.08006 * 119.99879 * 114.37448 * 7 6 5 9 9 C 1.37881 * 120.00262 * 294.37908 * 7 6 5 10 10 N 1.31515 * 119.99588 * 3.67290 * 9 7 6 11 11 Si 1.86797 * 120.00080 * 183.67910 * 9 7 6 12 12 H 1.48501 * 109.47399 * 59.99526 * 11 9 7 13 13 H 1.48500 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46799 * 299.99565 * 11 9 7 15 15 C 1.54816 * 110.48385 * 184.47906 * 6 5 2 16 16 C 1.55231 * 101.98595 * 220.51981 * 15 6 5 17 17 O 1.44383 * 103.56697 * 36.87855 * 16 15 6 18 18 C 1.43740 * 106.97431 * 320.01600 * 17 16 15 19 19 H 1.08997 * 109.46736 * 39.36132 * 1 2 3 20 20 H 1.09002 * 109.46617 * 279.36661 * 1 2 3 21 21 H 1.09000 * 109.47040 * 159.37163 * 1 2 3 22 22 H 1.09005 * 109.46819 * 64.31209 * 3 2 1 23 23 H 1.09001 * 109.47528 * 184.31531 * 3 2 1 24 24 H 1.09001 * 109.47020 * 304.31464 * 3 2 1 25 25 H 1.08993 * 109.47149 * 59.99534 * 4 2 1 26 26 H 1.09000 * 109.46815 * 180.02562 * 4 2 1 27 27 H 1.09005 * 109.46933 * 299.99670 * 4 2 1 28 28 H 1.09008 * 109.46551 * 185.52000 * 5 2 1 29 29 H 1.08999 * 109.47032 * 305.51488 * 5 2 1 30 30 H 0.96997 * 119.99822 * 180.02562 * 10 9 7 31 31 H 1.08999 * 110.90732 * 338.64062 * 15 6 5 32 32 H 1.09004 * 110.90659 * 102.24953 * 15 6 5 33 33 H 1.09001 * 110.51609 * 278.38527 * 16 15 6 34 34 H 1.08995 * 110.77552 * 155.50586 * 16 15 6 35 35 H 1.09001 * 109.88041 * 267.07990 * 18 17 16 36 36 H 1.09004 * 109.87677 * 145.93230 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 2.0400 -0.7213 -1.2493 6 6 1.6464 0.0756 -2.4946 7 6 0.1657 0.3559 -2.4937 8 1 -0.1916 1.3714 -2.4070 9 6 -0.7329 -0.6841 -2.6036 10 7 -0.3007 -1.9258 -2.6364 11 14 -2.5640 -0.3294 -2.7061 12 1 -2.8396 0.5104 -3.8994 13 1 -3.3105 -1.6083 -2.8171 14 1 -2.9977 0.3917 -1.4824 15 6 2.0524 -0.6892 -3.7780 16 6 2.5851 0.4558 -4.6807 17 8 3.2559 1.3349 -3.7523 18 6 2.4444 1.3919 -2.5672 19 1 -0.3633 0.7945 -0.6517 20 1 -0.3633 0.1673 1.0140 21 1 -0.3633 -0.9618 -0.3621 22 1 1.7412 1.9335 0.9262 23 1 3.1274 1.4434 -0.0773 24 1 1.6150 1.9781 -0.8488 25 1 1.6767 -1.7489 1.2493 26 1 3.1301 -0.7209 1.2494 27 1 1.6768 -0.2075 2.1393 28 1 3.1255 -0.8077 -1.2012 29 1 1.5982 -1.7164 -1.3000 30 1 -0.9328 -2.6574 -2.7140 31 1 2.8378 -1.4147 -3.5663 32 1 1.1881 -1.1746 -4.2313 33 1 1.7592 0.9723 -5.1698 34 1 3.2870 0.0705 -5.4201 35 1 1.7596 2.2377 -2.6273 36 1 3.0801 1.4889 -1.6871 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261155817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:20 Heat of formation + Delta-G solvation = -40.707142 kcal Electronic energy + Delta-G solvation = -15948.055620 eV Core-core repulsion = 13625.684749 eV Total energy + Delta-G solvation = -2322.370871 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.13952 -36.32171 -33.04090 -30.57214 -28.71959 -26.74296 -26.48448 -25.13809 -23.87529 -21.26923 -19.13162 -17.88840 -16.26503 -15.21096 -14.88805 -14.16303 -13.96866 -13.35549 -13.34390 -13.05929 -12.32111 -11.92373 -11.89390 -11.34190 -11.19339 -10.99144 -10.66022 -10.58115 -10.40922 -10.35147 -10.13113 -9.86731 -9.56622 -9.46119 -9.12694 -8.95567 -8.76520 -8.50435 -8.07560 -6.03486 -3.98158 3.27338 3.32675 3.36483 4.37737 5.09732 5.23818 5.79187 5.81576 5.87268 6.08443 6.24502 6.29142 6.30404 6.41374 6.44819 6.52025 6.59026 6.67468 6.72462 6.76365 6.83765 6.97418 7.06953 7.18477 7.25789 7.30364 7.42526 7.60216 7.69996 7.78677 7.85394 7.97078 8.07803 8.45182 8.86961 9.52227 11.00671 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.018280 C = 0.012451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.458261 B = 1531.334527 C = 2248.239282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C -0.148 4.148 4 C -0.138 4.138 5 C -0.084 4.084 6 C 0.051 3.949 7 C -0.492 4.492 8 H 0.056 0.944 9 C 0.070 3.930 10 N -0.880 5.880 11 Si 0.876 3.124 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.274 1.274 15 C -0.126 4.126 16 C 0.046 3.954 17 O -0.405 6.405 18 C 0.036 3.964 19 H 0.086 0.914 20 H 0.001 0.999 21 H 0.066 0.934 22 H 0.033 0.967 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.017 0.983 29 H 0.083 0.917 30 H 0.260 0.740 31 H 0.040 0.960 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.482 2.118 2.370 4.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.050 4.050 3 C -0.204 4.204 4 C -0.195 4.195 5 C -0.122 4.122 6 C 0.051 3.949 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.131 4.131 10 N -0.518 5.518 11 Si 0.703 3.297 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.164 4.164 16 C -0.030 4.030 17 O -0.325 6.325 18 C -0.039 4.039 19 H 0.105 0.895 20 H 0.020 0.980 21 H 0.085 0.915 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.600 2.029 2.328 4.037 hybrid contribution -1.289 -0.047 0.010 1.290 sum 1.311 1.983 2.338 3.334 Atomic orbital electron populations 1.22350 0.94039 1.05289 0.97024 1.20268 0.96822 0.93756 0.94196 1.22399 0.99146 0.97853 1.01049 1.21916 0.99585 1.00231 0.97789 1.21610 0.95600 1.01403 0.93600 1.19350 0.94496 0.89487 0.91607 1.20826 0.89654 0.92844 1.49629 0.92549 1.24799 0.97872 0.95152 0.95282 1.69913 1.34026 0.98131 1.49706 0.86930 0.86285 0.77634 0.78806 1.20418 1.21365 1.19932 1.23058 0.99939 0.96035 0.97415 1.23526 0.95239 0.91542 0.92740 1.88689 1.47830 1.68274 1.27744 1.24338 0.93502 0.99486 0.86608 0.89549 0.98037 0.91547 0.94803 0.93861 0.90732 0.93351 0.94059 0.94116 0.96389 0.89846 0.92991 0.94145 0.89043 0.93363 0.91674 0.93807 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 6.85 37.16 0.25 -2.56 16 2 C -0.05 -1.01 0.77 -154.50 -0.12 -1.13 16 3 C -0.15 -2.72 6.67 37.16 0.25 -2.47 16 4 C -0.14 -2.45 8.38 37.16 0.31 -2.13 16 5 C -0.08 -1.87 3.28 -26.73 -0.09 -1.96 16 6 C 0.05 1.17 0.30 -154.13 -0.05 1.12 16 7 C -0.49 -11.96 4.17 -34.44 -0.14 -12.10 16 8 H 0.06 1.40 6.91 -52.48 -0.36 1.04 16 9 C 0.07 1.74 2.66 -17.82 -0.05 1.69 16 10 N -0.88 -22.51 9.78 55.43 0.54 -21.97 16 11 Si 0.88 19.92 29.29 -169.99 -4.98 14.95 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 15 C -0.13 -2.89 5.74 -24.59 -0.14 -3.03 16 16 C 0.05 0.96 7.72 38.34 0.30 1.26 16 17 O -0.41 -9.03 11.52 -35.23 -0.41 -9.44 16 18 C 0.04 0.78 4.97 37.73 0.19 0.97 16 19 H 0.09 1.97 4.71 -51.93 -0.24 1.72 16 20 H 0.00 0.01 7.96 -51.93 -0.41 -0.40 16 21 H 0.07 1.57 5.84 -51.93 -0.30 1.27 16 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.04 0.75 6.81 -51.93 -0.35 0.40 16 24 H 0.07 1.45 4.47 -51.93 -0.23 1.22 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 28 H 0.02 0.38 8.13 -51.92 -0.42 -0.04 16 29 H 0.08 2.06 6.53 -51.93 -0.34 1.72 16 30 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 31 H 0.04 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.09 2.27 6.33 -51.93 -0.33 1.94 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.96 6.72 -51.93 -0.35 0.61 16 36 H 0.08 1.65 4.39 -51.93 -0.23 1.42 16 LS Contribution 257.23 15.07 3.88 3.88 Total: -1.00 -25.01 257.23 -5.91 -30.91 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -5.66 Total: 2.01 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 0.71 Total: -20.34 kcal Atomic # 7 Polarization: -22.51 SS G_CDS: 0.54 Total: -21.97 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.41 Total: -9.44 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.98 Total: 14.95 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.01 -5.91 -30.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.794 kcal (2) G-P(sol) polarization free energy of solvation -25.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds