Wall clock time and date at job start Mon Mar 30 2020 03:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.53007 * 109.47208 * 120.00268 * 2 1 3 5 5 C 1.53001 * 109.46745 * 239.99964 * 2 1 3 6 6 C 1.52997 * 109.47004 * 65.52058 * 5 2 1 7 7 C 1.50693 * 110.43659 * 307.02289 * 6 5 2 8 8 H 1.08006 * 119.99879 * 114.37448 * 7 6 5 9 9 C 1.37881 * 120.00262 * 294.37908 * 7 6 5 10 10 N 1.31515 * 119.99588 * 3.67290 * 9 7 6 11 11 Si 1.86797 * 120.00080 * 183.67910 * 9 7 6 12 12 H 1.48501 * 109.47399 * 59.99526 * 11 9 7 13 13 H 1.48500 * 109.47071 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.46799 * 299.99565 * 11 9 7 15 15 C 1.54816 * 110.48385 * 184.47906 * 6 5 2 16 16 C 1.55231 * 101.98595 * 220.51981 * 15 6 5 17 17 O 1.44383 * 103.56697 * 36.87855 * 16 15 6 18 18 C 1.43740 * 106.97431 * 320.01600 * 17 16 15 19 19 H 1.08997 * 109.46736 * 39.36132 * 1 2 3 20 20 H 1.09002 * 109.46617 * 279.36661 * 1 2 3 21 21 H 1.09000 * 109.47040 * 159.37163 * 1 2 3 22 22 H 1.09005 * 109.46819 * 64.31209 * 3 2 1 23 23 H 1.09001 * 109.47528 * 184.31531 * 3 2 1 24 24 H 1.09001 * 109.47020 * 304.31464 * 3 2 1 25 25 H 1.08993 * 109.47149 * 59.99534 * 4 2 1 26 26 H 1.09000 * 109.46815 * 180.02562 * 4 2 1 27 27 H 1.09005 * 109.46933 * 299.99670 * 4 2 1 28 28 H 1.09008 * 109.46551 * 185.52000 * 5 2 1 29 29 H 1.08999 * 109.47032 * 305.51488 * 5 2 1 30 30 H 0.96997 * 119.99822 * 180.02562 * 10 9 7 31 31 H 1.08999 * 110.90732 * 338.64062 * 15 6 5 32 32 H 1.09004 * 110.90659 * 102.24953 * 15 6 5 33 33 H 1.09001 * 110.51609 * 278.38527 * 16 15 6 34 34 H 1.08995 * 110.77552 * 155.50586 * 16 15 6 35 35 H 1.09001 * 109.88041 * 267.07990 * 18 17 16 36 36 H 1.09004 * 109.87677 * 145.93230 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 2.0400 -0.7213 -1.2493 6 6 1.6464 0.0756 -2.4946 7 6 0.1657 0.3559 -2.4937 8 1 -0.1916 1.3714 -2.4070 9 6 -0.7329 -0.6841 -2.6036 10 7 -0.3007 -1.9258 -2.6364 11 14 -2.5640 -0.3294 -2.7061 12 1 -2.8396 0.5104 -3.8994 13 1 -3.3105 -1.6083 -2.8171 14 1 -2.9977 0.3917 -1.4824 15 6 2.0524 -0.6892 -3.7780 16 6 2.5851 0.4558 -4.6807 17 8 3.2559 1.3349 -3.7523 18 6 2.4444 1.3919 -2.5672 19 1 -0.3633 0.7945 -0.6517 20 1 -0.3633 0.1673 1.0140 21 1 -0.3633 -0.9618 -0.3621 22 1 1.7412 1.9335 0.9262 23 1 3.1274 1.4434 -0.0773 24 1 1.6150 1.9781 -0.8488 25 1 1.6767 -1.7489 1.2493 26 1 3.1301 -0.7209 1.2494 27 1 1.6768 -0.2075 2.1393 28 1 3.1255 -0.8077 -1.2012 29 1 1.5982 -1.7164 -1.3000 30 1 -0.9328 -2.6574 -2.7140 31 1 2.8378 -1.4147 -3.5663 32 1 1.1881 -1.1746 -4.2313 33 1 1.7592 0.9723 -5.1698 34 1 3.2870 0.0705 -5.4201 35 1 1.7596 2.2377 -2.6273 36 1 3.0801 1.4889 -1.6871 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261155817.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:19 Heat of formation + Delta-G solvation = -53.908650 kcal Electronic energy + Delta-G solvation = -15948.628081 eV Core-core repulsion = 13625.684749 eV Total energy + Delta-G solvation = -2322.943331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87227 -37.98842 -34.85769 -32.38913 -30.40241 -28.45653 -28.10463 -26.79693 -25.66147 -22.99643 -20.94707 -19.51572 -18.11576 -17.01155 -16.65985 -15.95457 -15.67938 -15.01208 -14.92674 -14.67227 -14.05253 -13.69224 -13.57567 -12.95442 -12.84792 -12.73862 -12.43833 -12.30995 -12.18179 -12.06501 -11.86153 -11.58206 -11.20622 -11.10905 -10.89672 -10.67777 -10.61463 -10.24233 -9.94579 -7.95839 -5.92617 1.43297 1.47594 1.50099 2.49131 3.31195 3.40478 4.20305 4.24601 4.33939 4.44834 4.51724 4.58100 4.74936 4.77473 4.90857 4.99538 5.02767 5.06329 5.12723 5.19766 5.25874 5.28556 5.37285 5.46596 5.52439 5.61114 5.67702 5.77124 5.92176 5.96160 6.07188 6.21002 6.28663 6.57204 6.95866 7.58767 9.07018 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.018280 C = 0.012451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.458261 B = 1531.334527 C = 2248.239282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.133 4.133 5 C -0.078 4.078 6 C 0.043 3.957 7 C -0.489 4.489 8 H 0.050 0.950 9 C 0.043 3.957 10 N -0.897 5.897 11 Si 0.914 3.086 12 H -0.280 1.280 13 H -0.293 1.293 14 H -0.270 1.270 15 C -0.127 4.127 16 C 0.050 3.950 17 O -0.412 6.412 18 C 0.041 3.959 19 H 0.071 0.929 20 H 0.017 0.983 21 H 0.039 0.961 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.022 0.978 29 H 0.053 0.947 30 H 0.255 0.745 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.151 3.066 3.102 5.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.054 4.054 3 C -0.200 4.200 4 C -0.190 4.190 5 C -0.116 4.116 6 C 0.043 3.957 7 C -0.527 4.527 8 H 0.068 0.932 9 C -0.156 4.156 10 N -0.536 5.536 11 Si 0.742 3.258 12 H -0.206 1.206 13 H -0.219 1.219 14 H -0.195 1.195 15 C -0.165 4.165 16 C -0.026 4.026 17 O -0.333 6.333 18 C -0.034 4.034 19 H 0.090 0.910 20 H 0.036 0.964 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.267 2.988 3.060 5.382 hybrid contribution -1.502 -0.350 -0.225 1.558 sum 1.765 2.638 2.835 4.256 Atomic orbital electron populations 1.22201 0.95336 1.03094 0.97397 1.20286 0.95743 0.95085 0.94271 1.22306 0.99759 0.96332 1.01585 1.21849 1.00457 0.99560 0.97164 1.21490 0.95536 0.99994 0.94543 1.19423 0.93990 0.90385 0.91948 1.20914 0.90578 0.92312 1.48855 0.93237 1.25160 0.99988 0.95073 0.95430 1.70015 1.34385 0.98483 1.50712 0.86316 0.83761 0.77077 0.78649 1.20599 1.21894 1.19536 1.22971 0.98945 0.96571 0.97994 1.23560 0.95917 0.90499 0.92648 1.88681 1.48058 1.68455 1.28066 1.24322 0.93548 0.98443 0.87090 0.91013 0.96443 0.94201 0.92835 0.92628 0.91990 0.94261 0.92668 0.92315 0.95964 0.92810 0.93535 0.94460 0.91395 0.93518 0.88881 0.94082 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.19 6.85 71.98 0.49 -4.70 16 2 C -0.05 -2.06 0.77 -52.18 -0.04 -2.10 16 3 C -0.14 -4.86 6.67 71.98 0.48 -4.38 16 4 C -0.13 -4.38 8.38 71.98 0.60 -3.78 16 5 C -0.08 -3.38 3.28 30.59 0.10 -3.28 16 6 C 0.04 1.94 0.30 -51.94 -0.02 1.92 16 7 C -0.49 -23.65 4.17 25.60 0.11 -23.54 16 8 H 0.05 2.44 6.91 -2.91 -0.02 2.42 16 9 C 0.04 2.14 2.66 84.66 0.23 2.36 16 10 N -0.90 -46.61 9.78 21.45 0.21 -46.40 16 11 Si 0.91 40.87 29.29 68.60 2.01 42.88 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 15 C -0.13 -5.75 5.74 31.98 0.18 -5.57 16 16 C 0.05 2.01 7.72 72.75 0.56 2.58 16 17 O -0.41 -17.54 11.52 -148.98 -1.72 -19.26 16 18 C 0.04 1.71 4.97 72.35 0.36 2.07 16 19 H 0.07 3.20 4.71 -2.39 -0.01 3.19 16 20 H 0.02 0.64 7.96 -2.39 -0.02 0.62 16 21 H 0.04 1.87 5.84 -2.39 -0.01 1.86 16 22 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.05 1.75 6.81 -2.39 -0.02 1.73 16 24 H 0.06 2.27 4.47 -2.39 -0.01 2.26 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.71 8.13 -2.38 -0.02 1.69 16 28 H 0.02 0.92 8.13 -2.38 -0.02 0.90 16 29 H 0.05 2.67 6.53 -2.39 -0.02 2.65 16 30 H 0.26 13.12 8.31 -92.71 -0.77 12.34 16 31 H 0.04 1.67 7.87 -2.39 -0.02 1.65 16 32 H 0.07 3.40 6.33 -2.38 -0.02 3.39 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.04 1.73 6.72 -2.39 -0.02 1.71 16 36 H 0.10 3.70 4.39 -2.39 -0.01 3.69 16 Total: -1.00 -51.60 257.23 4.61 -46.99 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.05 Total: 14.21 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.06 Total: -38.42 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.21 Total: -46.40 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -1.72 Total: -19.26 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.01 Total: 42.88 kcal Total: -51.60 4.61 -46.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155817.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.920 kcal (2) G-P(sol) polarization free energy of solvation -51.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds