Wall clock time and date at job start Mon Mar 30 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.47192 * 119.78683 * 2 1 4 4 C 1.52985 * 108.66810 * 108.03976 * 3 2 1 5 5 C 1.51775 * 110.88307 * 86.46482 * 4 3 2 6 6 C 1.51791 * 113.81435 * 292.99974 * 5 4 3 7 7 N 1.46906 * 109.22038 * 306.48398 * 6 5 4 8 8 C 1.50696 * 109.22508 * 187.13514 * 6 5 4 9 9 H 1.08001 * 119.99676 * 354.88677 * 8 6 5 10 10 C 1.37873 * 120.00037 * 174.89128 * 8 6 5 11 11 N 1.31515 * 120.00047 * 6.11372 * 10 8 6 12 12 Si 1.86798 * 119.99919 * 186.11069 * 10 8 6 13 13 H 1.48500 * 109.47040 * 85.00050 * 12 10 8 14 14 H 1.48503 * 109.47280 * 204.99886 * 12 10 8 15 15 H 1.48502 * 109.47566 * 324.99591 * 12 10 8 16 16 C 1.53057 * 110.74307 * 66.80685 * 6 5 4 17 17 C 1.33375 * 119.78865 * 179.97438 * 2 1 3 18 18 O 1.21281 * 119.89022 * 0.28989 * 17 2 1 19 19 H 1.08998 * 109.46852 * 90.00317 * 1 2 3 20 20 H 1.09002 * 109.47260 * 210.00189 * 1 2 3 21 21 H 1.08998 * 109.47340 * 329.99931 * 1 2 3 22 22 H 1.09004 * 109.60673 * 348.28229 * 3 2 1 23 23 H 1.08998 * 109.74119 * 227.87393 * 3 2 1 24 24 H 1.09005 * 109.19579 * 326.10367 * 4 3 2 25 25 H 1.09002 * 109.15938 * 206.80477 * 4 3 2 26 26 H 1.09006 * 108.61475 * 171.87553 * 5 4 3 27 27 H 1.09001 * 108.61636 * 54.11980 * 5 4 3 28 28 H 1.00900 * 110.99702 * 185.48012 * 7 6 5 29 29 H 1.00903 * 110.99800 * 309.42775 * 7 6 5 30 30 H 0.97004 * 119.99869 * 179.97438 * 11 10 8 31 31 H 1.09001 * 109.63331 * 34.78510 * 16 6 5 32 32 H 1.08999 * 109.63490 * 155.38348 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1962 1.2775 0.0000 4 6 2.8290 1.4795 1.3781 5 6 4.1871 0.8062 1.4538 6 6 4.1248 -0.7089 1.3842 7 7 3.1978 -1.2025 2.4115 8 6 5.4975 -1.2744 1.6431 9 1 6.3424 -0.6110 1.7552 10 6 5.6747 -2.6384 1.7366 11 7 4.6724 -3.4508 1.4816 12 14 7.3385 -3.3327 2.2256 13 1 7.4476 -3.3603 3.7063 14 1 7.4750 -4.7124 1.6934 15 1 8.4158 -2.4775 1.6657 16 6 3.6418 -1.1689 0.0067 17 6 2.1276 -1.1575 0.0005 18 8 1.5153 -2.2044 -0.0043 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3634 0.8899 0.5138 22 1 1.5053 2.0944 -0.2085 23 1 2.9763 1.2551 -0.7609 24 1 2.1748 1.0533 2.1388 25 1 2.9473 2.5469 1.5645 26 1 4.6656 1.0922 2.3906 27 1 4.8010 1.1674 0.6287 28 1 3.2032 -2.2108 2.4489 29 1 3.4138 -0.8060 3.3139 30 1 4.7973 -4.4106 1.5470 31 1 4.0164 -0.4891 -0.7586 32 1 4.0013 -2.1791 -0.1890 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261161781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:33 Heat of formation + Delta-G solvation = -36.771589 kcal Electronic energy + Delta-G solvation = -15331.394660 eV Core-core repulsion = 12905.654104 eV Total energy + Delta-G solvation = -2425.740556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.36383 -36.19392 -34.86394 -32.19422 -30.35569 -28.47992 -27.13811 -25.19567 -24.55024 -21.96763 -18.85261 -17.86210 -16.56983 -15.94971 -15.50202 -14.75726 -14.56289 -13.92361 -13.30131 -13.03210 -12.52704 -12.26383 -12.04714 -11.89669 -11.50150 -11.41999 -11.12612 -10.96396 -10.64938 -10.35828 -10.22579 -10.08376 -9.63785 -9.29367 -8.74903 -8.32564 -7.84412 -7.09786 -6.00126 -4.23712 3.23541 3.32246 3.33478 3.84606 4.02382 4.33465 5.15121 5.37577 5.50704 5.60810 5.76276 5.93727 6.01012 6.11854 6.23087 6.34954 6.40145 6.44386 6.67958 6.72459 6.97393 7.11699 7.30575 7.42932 7.71004 7.80756 8.17416 8.42132 8.67291 9.00211 9.22421 9.41344 9.50197 10.91119 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.045328 B = 0.011613 C = 0.010076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.568759 B = 2410.470536 C = 2778.216760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.619 5.619 3 C 0.121 3.879 4 C -0.133 4.133 5 C -0.101 4.101 6 C 0.246 3.754 7 N -0.847 5.847 8 C -0.551 4.551 9 H 0.056 0.944 10 C 0.067 3.933 11 N -0.874 5.874 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.114 4.114 17 C 0.545 3.455 18 O -0.560 6.560 19 H 0.039 0.961 20 H 0.071 0.929 21 H 0.056 0.944 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.360 0.640 29 H 0.309 0.691 30 H 0.267 0.733 31 H 0.051 0.949 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 8.830 -1.585 9.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.354 5.354 3 C -0.003 4.003 4 C -0.172 4.172 5 C -0.139 4.139 6 C 0.154 3.846 7 N -0.379 5.379 8 C -0.590 4.590 9 H 0.074 0.926 10 C -0.137 4.137 11 N -0.512 5.512 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.155 4.155 17 C 0.335 3.665 18 O -0.437 6.437 19 H 0.057 0.943 20 H 0.090 0.910 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.178 0.822 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.458 8.394 -2.054 9.724 hybrid contribution 1.878 -0.704 0.780 2.152 sum -2.581 7.690 -1.274 8.211 Atomic orbital electron populations 1.21430 0.81494 1.02207 1.00157 1.47709 1.05635 1.06685 1.75389 1.21631 0.95664 0.85021 0.97935 1.21729 0.99021 0.98817 0.97587 1.21222 0.94674 0.97383 1.00630 1.17895 0.89891 0.88685 0.88116 1.59485 1.54389 1.16119 1.07872 1.21852 0.94838 0.91939 1.50390 0.92622 1.25064 0.96858 0.97137 0.94611 1.69745 1.30666 1.03725 1.47017 0.86622 0.84345 0.78304 0.78753 1.20700 1.21191 1.20045 1.22155 0.88608 1.05503 0.99255 1.20814 0.91190 0.81938 0.72522 1.90564 1.70545 1.31907 1.50714 0.94253 0.91047 0.92543 0.91395 0.91456 0.90410 0.93015 0.93288 0.93470 0.82225 0.88276 0.92298 0.93079 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.35 59.85 0.62 2.07 16 2 N -0.62 -11.67 2.86 -181.11 -0.52 -12.19 16 3 C 0.12 1.87 5.87 -3.67 -0.02 1.85 16 4 C -0.13 -2.17 5.60 -27.36 -0.15 -2.32 16 5 C -0.10 -1.96 4.09 -27.97 -0.11 -2.07 16 6 C 0.25 5.74 0.53 -133.34 -0.07 5.67 16 7 N -0.85 -20.13 6.75 -0.67 0.00 -20.14 16 8 C -0.55 -14.21 8.12 -34.44 -0.28 -14.49 16 9 H 0.06 1.43 7.75 -52.49 -0.41 1.03 16 10 C 0.07 1.76 5.02 -17.82 -0.09 1.67 16 11 N -0.87 -24.08 9.62 55.43 0.53 -23.55 16 12 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C -0.11 -2.74 4.66 -27.50 -0.13 -2.86 16 17 C 0.54 12.76 5.80 -11.25 -0.07 12.69 16 18 O -0.56 -15.18 16.60 5.56 0.09 -15.09 16 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.07 1.29 7.38 -51.93 -0.38 0.91 16 21 H 0.06 0.73 8.03 -51.93 -0.42 0.32 16 22 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 23 H 0.07 1.03 6.72 -51.93 -0.35 0.68 16 24 H 0.08 1.41 7.38 -51.93 -0.38 1.02 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.95 8.09 -51.93 -0.42 0.53 16 27 H 0.05 0.88 7.88 -51.93 -0.41 0.47 16 28 H 0.36 9.65 6.67 -39.29 -0.26 9.39 16 29 H 0.31 6.93 8.91 -39.29 -0.35 6.58 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 1.10 6.77 -51.93 -0.35 0.75 16 32 H 0.12 3.20 5.97 -51.93 -0.31 2.89 16 LS Contribution 250.80 15.07 3.78 3.78 Total: -1.00 -29.56 250.80 -5.88 -35.44 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -4.43 Total: 13.90 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.30 Total: 2.21 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.01 Total: -55.87 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.09 Total: -15.09 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.56 -5.88 -35.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261161781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.331 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds