Wall clock time and date at job start Mon Mar 30 2020 03:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99916 * 2 1 4 4 C 1.53007 * 109.46857 * 174.45156 * 3 2 1 5 5 C 1.50702 * 109.47019 * 54.45453 * 3 2 1 6 6 H 1.07992 * 120.00085 * 239.99901 * 5 3 2 7 7 C 1.37882 * 119.99991 * 59.99855 * 5 3 2 8 8 N 1.31511 * 119.99954 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99993 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47207 * 59.99951 * 9 7 5 11 11 H 1.48497 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47170 * 300.00257 * 9 7 5 13 13 C 1.52995 * 109.47187 * 294.45462 * 3 2 1 14 14 C 1.53005 * 109.47114 * 295.02389 * 13 3 2 15 15 C 1.54961 * 110.91876 * 72.51641 * 14 13 3 16 16 C 1.54269 * 104.15832 * 156.29508 * 15 14 13 17 17 C 1.53876 * 106.64184 * 336.44758 * 16 15 14 18 18 C 1.54275 * 106.59542 * 359.97431 * 17 16 15 19 19 H 1.09001 * 109.46933 * 173.55341 * 1 2 3 20 20 H 1.09001 * 109.47341 * 293.55228 * 1 2 3 21 21 H 1.09002 * 109.47531 * 53.55579 * 1 2 3 22 22 H 1.09002 * 109.46814 * 180.02562 * 4 3 2 23 23 H 1.08998 * 109.47250 * 300.00126 * 4 3 2 24 24 H 1.08998 * 109.46864 * 60.00294 * 4 3 2 25 25 H 0.97004 * 120.00041 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47084 * 175.02846 * 13 3 2 27 27 H 1.08997 * 109.47333 * 55.02680 * 13 3 2 28 28 H 1.09003 * 110.67162 * 309.21568 * 14 13 3 29 29 H 1.09000 * 110.48005 * 37.64575 * 15 14 13 30 30 H 1.08998 * 110.53315 * 274.97432 * 15 14 13 31 31 H 1.08998 * 110.03610 * 217.13388 * 16 15 14 32 32 H 1.08997 * 110.03330 * 95.75393 * 16 15 14 33 33 H 1.08995 * 110.03470 * 119.25548 * 17 16 15 34 34 H 1.09001 * 110.03448 * 240.64404 * 17 16 15 35 35 H 1.08998 * 110.48190 * 142.28976 * 18 17 16 36 36 H 1.08999 * 110.48184 * 264.79912 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5293 1.1873 0.1395 5 6 1.4599 2.1003 1.1561 6 1 0.9228 3.0191 0.9726 7 6 1.6422 1.6545 2.4480 8 7 2.2967 0.5359 2.6715 9 14 0.9607 2.6401 3.8811 10 1 -0.5137 2.7553 3.7460 11 1 1.2882 1.9517 5.1554 12 1 1.5652 3.9964 3.8809 13 6 1.6721 2.0142 -1.3130 14 6 2.3355 1.2753 -2.4770 15 6 1.6209 -0.0710 -2.7569 16 6 1.9547 -0.3759 -4.2318 17 6 2.2837 0.9721 -4.8970 18 6 2.1378 2.0504 -3.8033 19 1 -0.3633 -1.0212 -0.1154 20 1 -0.3634 0.4106 0.9421 21 1 -0.3634 0.6105 -0.8267 22 1 3.9726 2.1832 0.1399 23 1 3.7701 0.6824 1.0749 24 1 3.9273 0.6125 -0.6967 25 1 2.4246 0.2221 3.5804 26 1 2.0394 3.0399 -1.2773 27 1 0.5914 2.0201 -1.4550 28 1 3.3951 1.1152 -2.2773 29 1 0.5442 0.0338 -2.6233 30 1 2.0125 -0.8539 -2.1074 31 1 1.0959 -0.8344 -4.7220 32 1 2.8164 -1.0409 -4.2899 33 1 3.3052 0.9616 -5.2770 34 1 1.5849 1.1675 -5.7105 35 1 2.9063 2.8150 -3.9166 36 1 1.1454 2.4997 -3.8407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261263887.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:34 Heat of formation + Delta-G solvation = -68.053351 kcal Electronic energy + Delta-G solvation = -15383.219427 eV Core-core repulsion = 13059.662736 eV Total energy + Delta-G solvation = -2323.556691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.42929 -36.28148 -32.55606 -31.42972 -28.37079 -28.13177 -25.76124 -24.58416 -24.06818 -20.11684 -19.81439 -18.42161 -16.52787 -15.54520 -14.65157 -14.38127 -14.24801 -13.58500 -13.34985 -12.95025 -12.90153 -12.12379 -11.46910 -11.19843 -11.13525 -10.88897 -10.78730 -10.76706 -10.53759 -10.38895 -10.19386 -10.13163 -10.05320 -9.91319 -9.62602 -9.30146 -8.58311 -8.42048 -7.65698 -5.91193 -4.09997 3.30357 3.35881 3.38201 4.41971 5.10901 5.13759 5.17270 5.25369 5.67187 5.82765 5.87651 6.01733 6.04833 6.15373 6.24417 6.28636 6.37194 6.50533 6.58606 6.65913 6.70329 6.75603 6.82270 6.92951 7.04492 7.09250 7.14703 7.22749 7.30443 7.60284 7.81138 8.15146 8.36389 8.88410 9.19492 9.62870 11.07578 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.052752 B = 0.008994 C = 0.008721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.661985 B = 3112.600121 C = 3210.051189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.373 6.373 3 C 0.237 3.763 4 C -0.125 4.125 5 C -0.553 4.553 6 H 0.052 0.948 7 C 0.081 3.919 8 N -0.857 5.857 9 Si 0.882 3.118 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.127 4.127 14 C -0.087 4.087 15 C -0.108 4.108 16 C -0.128 4.128 17 C -0.123 4.123 18 C -0.123 4.123 19 H 0.044 0.956 20 H 0.037 0.963 21 H 0.015 0.985 22 H 0.035 0.965 23 H 0.086 0.914 24 H 0.020 0.980 25 H 0.259 0.741 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 0.092 -9.549 9.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.292 6.292 3 C 0.199 3.801 4 C -0.182 4.182 5 C -0.591 4.591 6 H 0.070 0.930 7 C -0.124 4.124 8 N -0.494 5.494 9 Si 0.710 3.290 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.203 1.203 13 C -0.165 4.165 14 C -0.106 4.106 15 C -0.145 4.145 16 C -0.166 4.166 17 C -0.160 4.160 18 C -0.161 4.161 19 H 0.063 0.937 20 H 0.055 0.945 21 H 0.034 0.966 22 H 0.054 0.946 23 H 0.105 0.895 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.477 -0.209 -9.412 9.426 hybrid contribution -0.659 0.876 0.838 1.380 sum -1.136 0.667 -8.574 8.675 Atomic orbital electron populations 1.22143 0.85049 0.97791 0.99040 1.87810 1.16568 1.30441 1.94416 1.18934 0.90997 0.80839 0.89289 1.21676 0.95598 0.99088 1.01853 1.21483 1.37383 1.08867 0.91373 0.92977 1.24966 0.94421 0.94511 0.98539 1.69980 1.39058 1.20055 1.20268 0.86837 0.79608 0.80465 0.82096 1.20328 1.21247 1.20260 1.22159 0.99141 0.98924 0.96266 1.22195 1.00294 0.94656 0.93422 1.22393 1.00124 0.98205 0.93810 1.22212 1.00338 0.96708 0.97336 1.22112 1.00449 0.95626 0.97839 1.22470 1.00864 0.97295 0.95463 0.93699 0.94458 0.96649 0.94557 0.89529 0.96132 0.93104 0.92887 0.93208 0.90675 0.92346 0.90562 0.92851 0.92554 0.92588 0.92824 0.92547 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.28 9.52 101.05 0.96 2.24 16 2 O -0.37 -9.32 7.59 -35.23 -0.27 -9.59 16 3 C 0.24 5.81 0.41 -91.77 -0.04 5.77 16 4 C -0.12 -3.03 8.17 37.16 0.30 -2.72 16 5 C -0.55 -14.90 6.67 -34.44 -0.23 -15.13 16 6 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 7 C 0.08 2.21 5.09 -17.82 -0.09 2.11 16 8 N -0.86 -24.27 10.87 55.43 0.60 -23.66 16 9 Si 0.88 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 C -0.13 -2.67 3.75 -26.73 -0.10 -2.77 16 14 C -0.09 -1.58 2.59 -88.59 -0.23 -1.81 16 15 C -0.11 -1.88 4.73 -25.03 -0.12 -2.00 16 16 C -0.13 -1.84 6.80 -25.61 -0.17 -2.02 16 17 C -0.12 -1.65 6.80 -25.61 -0.17 -1.83 16 18 C -0.12 -1.87 6.27 -25.07 -0.16 -2.03 16 19 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 20 H 0.04 0.91 7.14 -51.93 -0.37 0.54 16 21 H 0.02 0.32 5.28 -51.93 -0.27 0.04 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 24 H 0.02 0.45 6.16 -51.93 -0.32 0.13 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.05 1.05 6.16 -51.93 -0.32 0.73 16 28 H 0.08 1.42 5.93 -51.93 -0.31 1.11 16 29 H 0.06 1.04 6.56 -51.93 -0.34 0.70 16 30 H 0.08 1.47 7.22 -51.93 -0.37 1.10 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 LS Contribution 269.89 15.07 4.07 4.07 Total: -1.00 -27.81 269.89 -6.63 -34.44 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -5.96 Total: -1.13 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -0.05 Total: -20.18 kcal Atomic # 7 Polarization: -24.27 SS G_CDS: 0.60 Total: -23.66 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.27 Total: -9.59 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.81 -6.63 -34.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263887.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.609 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds