Wall clock time and date at job start Mon Mar 30 2020 03:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99916 * 2 1 4 4 C 1.53007 * 109.46857 * 174.45156 * 3 2 1 5 5 C 1.50702 * 109.47019 * 54.45453 * 3 2 1 6 6 H 1.07992 * 120.00085 * 239.99901 * 5 3 2 7 7 C 1.37882 * 119.99991 * 59.99855 * 5 3 2 8 8 N 1.31511 * 119.99954 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99993 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47207 * 59.99951 * 9 7 5 11 11 H 1.48497 * 109.47040 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47170 * 300.00257 * 9 7 5 13 13 C 1.52995 * 109.47187 * 294.45462 * 3 2 1 14 14 C 1.53005 * 109.47114 * 295.02389 * 13 3 2 15 15 C 1.54961 * 110.91876 * 72.51641 * 14 13 3 16 16 C 1.54269 * 104.15832 * 156.29508 * 15 14 13 17 17 C 1.53876 * 106.64184 * 336.44758 * 16 15 14 18 18 C 1.54275 * 106.59542 * 359.97431 * 17 16 15 19 19 H 1.09001 * 109.46933 * 173.55341 * 1 2 3 20 20 H 1.09001 * 109.47341 * 293.55228 * 1 2 3 21 21 H 1.09002 * 109.47531 * 53.55579 * 1 2 3 22 22 H 1.09002 * 109.46814 * 180.02562 * 4 3 2 23 23 H 1.08998 * 109.47250 * 300.00126 * 4 3 2 24 24 H 1.08998 * 109.46864 * 60.00294 * 4 3 2 25 25 H 0.97004 * 120.00041 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47084 * 175.02846 * 13 3 2 27 27 H 1.08997 * 109.47333 * 55.02680 * 13 3 2 28 28 H 1.09003 * 110.67162 * 309.21568 * 14 13 3 29 29 H 1.09000 * 110.48005 * 37.64575 * 15 14 13 30 30 H 1.08998 * 110.53315 * 274.97432 * 15 14 13 31 31 H 1.08998 * 110.03610 * 217.13388 * 16 15 14 32 32 H 1.08997 * 110.03330 * 95.75393 * 16 15 14 33 33 H 1.08995 * 110.03470 * 119.25548 * 17 16 15 34 34 H 1.09001 * 110.03448 * 240.64404 * 17 16 15 35 35 H 1.08998 * 110.48190 * 142.28976 * 18 17 16 36 36 H 1.08999 * 110.48184 * 264.79912 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5293 1.1873 0.1395 5 6 1.4599 2.1003 1.1561 6 1 0.9228 3.0191 0.9726 7 6 1.6422 1.6545 2.4480 8 7 2.2967 0.5359 2.6715 9 14 0.9607 2.6401 3.8811 10 1 -0.5137 2.7553 3.7460 11 1 1.2882 1.9517 5.1554 12 1 1.5652 3.9964 3.8809 13 6 1.6721 2.0142 -1.3130 14 6 2.3355 1.2753 -2.4770 15 6 1.6209 -0.0710 -2.7569 16 6 1.9547 -0.3759 -4.2318 17 6 2.2837 0.9721 -4.8970 18 6 2.1378 2.0504 -3.8033 19 1 -0.3633 -1.0212 -0.1154 20 1 -0.3634 0.4106 0.9421 21 1 -0.3634 0.6105 -0.8267 22 1 3.9726 2.1832 0.1399 23 1 3.7701 0.6824 1.0749 24 1 3.9273 0.6125 -0.6967 25 1 2.4246 0.2221 3.5804 26 1 2.0394 3.0399 -1.2773 27 1 0.5914 2.0201 -1.4550 28 1 3.3951 1.1152 -2.2773 29 1 0.5442 0.0338 -2.6233 30 1 2.0125 -0.8539 -2.1074 31 1 1.0959 -0.8344 -4.7220 32 1 2.8164 -1.0409 -4.2899 33 1 3.3052 0.9616 -5.2770 34 1 1.5849 1.1675 -5.7105 35 1 2.9063 2.8150 -3.9166 36 1 1.1454 2.4997 -3.8407 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261263887.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:33 Heat of formation + Delta-G solvation = -82.841412 kcal Electronic energy + Delta-G solvation = -15383.860686 eV Core-core repulsion = 13059.662736 eV Total energy + Delta-G solvation = -2324.197950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.01155 -37.87328 -34.57757 -33.18172 -29.98418 -29.38113 -27.72316 -26.47806 -25.73382 -21.74431 -20.97524 -20.08335 -18.53367 -17.01944 -16.60600 -15.97357 -15.75300 -15.41489 -15.07238 -14.58945 -14.18448 -13.83427 -13.18133 -13.02663 -12.90212 -12.69909 -12.63869 -12.22225 -12.06312 -12.00448 -11.96245 -11.74610 -11.43168 -11.21986 -11.13797 -10.99362 -10.58752 -10.41348 -9.56147 -7.98553 -6.23915 1.39669 1.40678 1.47569 2.42286 3.18185 3.77559 3.88349 3.93022 3.98358 4.45880 4.61010 4.74580 4.76234 4.83352 4.86117 4.91936 4.92201 5.02590 5.05003 5.11141 5.16247 5.22941 5.25187 5.32614 5.41021 5.44955 5.52301 5.63345 5.68067 5.69382 5.74559 6.18008 6.32137 6.82185 7.25046 7.54732 8.98184 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.052752 B = 0.008994 C = 0.008721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.661985 B = 3112.600121 C = 3210.051189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 O -0.389 6.389 3 C 0.228 3.772 4 C -0.118 4.118 5 C -0.566 4.566 6 H 0.045 0.955 7 C 0.038 3.962 8 N -0.884 5.884 9 Si 0.938 3.062 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.272 1.272 13 C -0.117 4.117 14 C -0.088 4.088 15 C -0.106 4.106 16 C -0.124 4.124 17 C -0.117 4.117 18 C -0.119 4.119 19 H 0.067 0.933 20 H 0.010 0.990 21 H 0.030 0.970 22 H 0.038 0.962 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.257 0.743 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 0.482 -11.070 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.308 6.308 3 C 0.190 3.810 4 C -0.175 4.175 5 C -0.604 4.604 6 H 0.063 0.937 7 C -0.165 4.165 8 N -0.521 5.521 9 Si 0.764 3.236 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.197 1.197 13 C -0.155 4.155 14 C -0.107 4.107 15 C -0.144 4.144 16 C -0.162 4.162 17 C -0.155 4.155 18 C -0.157 4.157 19 H 0.085 0.915 20 H 0.029 0.971 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.834 0.189 -10.940 10.974 hybrid contribution -0.561 0.744 1.318 1.614 sum -1.395 0.933 -9.622 9.768 Atomic orbital electron populations 1.22173 0.83927 0.99328 0.98179 1.87775 1.17841 1.30693 1.94523 1.19033 0.90809 0.80780 0.90375 1.21571 0.96010 0.99063 1.00865 1.21795 1.37197 1.08833 0.92623 0.93697 1.25606 0.94734 0.95362 1.00788 1.70112 1.40114 1.21337 1.20511 0.85946 0.79001 0.79288 0.79351 1.20021 1.21002 1.19749 1.21992 0.99122 0.98624 0.95785 1.22133 0.99286 0.95359 0.93888 1.22307 0.99381 0.96978 0.95720 1.22182 1.01254 0.97645 0.95076 1.22096 1.01843 0.94003 0.97550 1.22427 1.01341 0.97782 0.94111 0.91476 0.97101 0.95129 0.94267 0.92491 0.94551 0.93323 0.93234 0.93553 0.91670 0.92991 0.93048 0.91350 0.91999 0.91348 0.90881 0.91598 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.72 9.52 113.37 1.08 3.79 16 2 O -0.39 -19.53 7.59 -148.98 -1.13 -20.66 16 3 C 0.23 11.21 0.41 -11.54 0.00 11.20 16 4 C -0.12 -5.75 8.17 71.98 0.59 -5.17 16 5 C -0.57 -30.75 6.67 25.60 0.17 -30.57 16 6 H 0.04 2.44 7.74 -2.91 -0.02 2.41 16 7 C 0.04 2.07 5.09 84.66 0.43 2.50 16 8 N -0.88 -50.77 10.87 21.45 0.23 -50.53 16 9 Si 0.94 43.45 29.54 68.60 2.03 45.48 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C -0.12 -4.86 3.75 30.59 0.11 -4.74 16 14 C -0.09 -3.07 2.59 -9.48 -0.02 -3.10 16 15 C -0.11 -3.55 4.73 31.70 0.15 -3.40 16 16 C -0.12 -3.21 6.80 31.32 0.21 -2.99 16 17 C -0.12 -2.74 6.80 31.32 0.21 -2.52 16 18 C -0.12 -3.29 6.27 31.67 0.20 -3.09 16 19 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 20 H 0.01 0.52 7.14 -2.39 -0.02 0.50 16 21 H 0.03 1.25 5.28 -2.39 -0.01 1.23 16 22 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 24 H 0.04 1.61 6.16 -2.39 -0.01 1.59 16 25 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.05 1.91 6.16 -2.39 -0.01 1.90 16 28 H 0.07 2.39 5.93 -2.39 -0.01 2.38 16 29 H 0.05 1.77 6.56 -2.39 -0.02 1.76 16 30 H 0.05 1.95 7.22 -2.39 -0.02 1.94 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 Total: -1.00 -58.79 269.89 5.29 -53.50 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.03 Total: 10.30 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 3.13 Total: -38.09 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.23 Total: -50.53 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.13 Total: -20.66 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -58.79 5.29 -53.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261263887.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.336 kcal (2) G-P(sol) polarization free energy of solvation -58.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds