Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46886 * 2 1 4 4 C 1.33488 * 117.59524 * 275.12476 * 3 2 1 5 5 O 1.21277 * 118.69387 * 357.22301 * 4 3 2 6 6 C 1.50491 * 122.61920 * 177.21945 * 4 3 2 7 7 C 1.53312 * 109.06709 * 16.23159 * 6 4 3 8 8 C 1.53411 * 108.00125 * 314.20792 * 7 6 4 9 9 N 1.35552 * 117.59533 * 95.12952 * 3 2 1 10 10 C 1.46901 * 110.99800 * 326.82440 * 9 3 2 11 11 C 1.50698 * 109.47098 * 173.61074 * 10 9 3 12 12 H 1.07999 * 120.00129 * 354.59120 * 11 10 9 13 13 C 1.37876 * 120.00019 * 174.86408 * 11 10 9 14 14 N 1.31509 * 120.00068 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00084 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47550 * 89.99790 * 15 13 11 17 17 H 1.48499 * 109.47327 * 210.00021 * 15 13 11 18 18 H 1.48501 * 109.47135 * 329.99525 * 15 13 11 19 19 H 1.09005 * 109.47090 * 60.00354 * 1 2 3 20 20 H 1.09003 * 109.47078 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47455 * 299.99628 * 1 2 3 22 22 H 1.09007 * 109.47148 * 240.00767 * 2 1 3 23 23 H 1.08993 * 109.47207 * 120.00032 * 2 1 3 24 24 H 1.08997 * 109.53667 * 256.35057 * 6 4 3 25 25 H 1.08997 * 109.60196 * 136.14354 * 6 4 3 26 26 H 1.09003 * 109.75838 * 194.58857 * 7 6 4 27 27 H 1.08994 * 109.80209 * 73.85996 * 7 6 4 28 28 H 1.08998 * 109.57458 * 305.99958 * 8 7 6 29 29 H 1.08998 * 109.67863 * 185.68051 * 8 7 6 30 30 H 1.08999 * 109.47091 * 53.61156 * 10 9 3 31 31 H 1.09004 * 109.46933 * 293.60972 * 10 9 3 32 32 H 0.97002 * 120.00411 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1248 1.9995 -1.1783 5 8 1.8643 1.3788 -2.1871 6 6 2.5551 3.4360 -1.3048 7 6 3.2076 3.8809 0.0093 8 6 2.3190 3.4038 1.1652 9 7 2.3288 1.9375 1.1965 10 6 1.4505 1.4276 2.2579 11 6 1.9227 1.9445 3.5923 12 1 2.8376 2.5148 3.6575 13 6 1.1898 1.6847 4.7309 14 7 0.0784 0.9861 4.6523 15 14 1.7749 2.3260 6.3849 16 1 1.2018 3.6750 6.6236 17 1 1.3305 1.4022 7.4593 18 1 3.2575 2.4106 6.3867 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 1.8934 -0.5137 -0.8901 23 1 1.8933 -0.5138 0.8899 24 1 1.6854 4.0603 -1.5097 25 1 3.2731 3.5323 -2.1192 26 1 3.2884 4.9677 0.0311 27 1 4.1986 3.4360 0.0986 28 1 1.2998 3.7590 1.0130 29 1 2.7038 3.7918 2.1083 30 1 1.4779 0.3380 2.2600 31 1 0.4297 1.7651 2.0781 32 1 -0.4371 0.8029 5.4533 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261273960.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = -0.729516 kcal Electronic energy + Delta-G solvation = -14910.117449 eV Core-core repulsion = 12485.939795 eV Total energy + Delta-G solvation = -2424.177654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33527 -36.96897 -34.46228 -33.17392 -31.25073 -29.90505 -27.13043 -25.24256 -23.72126 -21.89144 -21.31917 -18.13599 -17.00148 -16.35970 -16.13325 -15.10239 -14.62455 -14.25341 -13.62583 -13.36335 -13.23439 -13.08220 -12.27951 -12.14753 -12.04449 -11.54640 -11.25341 -10.95528 -10.92384 -10.71333 -10.61788 -10.31760 -10.16287 -9.75439 -9.19906 -9.12763 -8.56214 -6.85692 -6.20940 -4.24106 3.04221 3.22112 3.27860 3.30613 3.37661 4.30525 4.65688 5.11772 5.15289 5.18005 5.32667 5.59899 5.69566 5.79589 5.85466 5.93622 5.96550 6.13982 6.35880 6.37186 6.42208 6.55017 6.61456 6.72253 7.09848 7.30606 7.64555 7.87510 8.06632 8.50085 8.81933 9.09976 9.40760 10.90085 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039731 B = 0.009927 C = 0.008286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.572774 B = 2819.888241 C = 3378.532941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.436 5.436 4 C 0.499 3.501 5 O -0.577 6.577 6 C -0.134 4.134 7 C -0.125 4.125 8 C 0.041 3.959 9 N -0.307 5.307 10 C 0.168 3.832 11 C -0.516 4.516 12 H 0.068 0.932 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.902 3.098 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.271 1.271 19 H 0.051 0.949 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.006 0.994 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 3.556 -6.023 7.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.252 5.252 4 C 0.286 3.714 5 O -0.456 6.456 6 C -0.174 4.174 7 C -0.163 4.163 8 C -0.087 4.087 9 N -0.125 5.125 10 C 0.044 3.956 11 C -0.556 4.556 12 H 0.086 0.914 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.730 3.270 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.196 1.196 19 H 0.070 0.930 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.100 0.900 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.360 3.019 -6.369 7.808 hybrid contribution -0.736 0.643 0.985 1.388 sum 2.624 3.662 -5.384 7.020 Atomic orbital electron populations 1.22306 0.95907 1.02283 1.02666 1.21608 0.94406 0.82278 1.03512 1.47304 1.62296 1.12903 1.02669 1.20179 0.79201 0.89482 0.82519 1.90647 1.53689 1.66444 1.34847 1.21735 1.02380 0.93228 1.00015 1.21840 1.00175 1.01003 0.93268 1.22521 0.98360 0.87767 1.00091 1.63796 1.50134 1.06194 0.92415 1.20502 0.90272 0.97092 0.87766 1.21000 1.08926 1.35161 0.90478 0.91409 1.24965 0.94772 0.95056 0.99439 1.69946 1.14858 1.38769 1.29505 0.86422 0.79180 0.78598 0.82824 1.20598 1.21119 1.19582 0.92996 0.91823 0.91090 0.90035 0.88953 0.89049 0.88707 0.90676 0.90424 0.94646 0.87454 0.93653 0.97578 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.89 37.16 0.37 -2.80 16 2 C 0.10 1.98 5.20 -4.04 -0.02 1.96 16 3 N -0.44 -8.72 3.10 -60.69 -0.19 -8.91 16 4 C 0.50 9.58 7.40 -11.66 -0.09 9.50 16 5 O -0.58 -12.41 16.29 5.56 0.09 -12.32 16 6 C -0.13 -1.99 6.16 -27.82 -0.17 -2.16 16 7 C -0.12 -1.79 6.27 -26.36 -0.17 -1.95 16 8 C 0.04 0.74 5.28 -3.74 -0.02 0.72 16 9 N -0.31 -6.45 5.07 -115.00 -0.58 -7.04 16 10 C 0.17 4.08 3.50 -4.98 -0.02 4.07 16 11 C -0.52 -13.41 8.38 -34.44 -0.29 -13.70 16 12 H 0.07 1.71 6.89 -52.49 -0.36 1.35 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 15 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 19 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 20 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 21 H 0.07 1.45 5.90 -51.93 -0.31 1.15 16 22 H 0.08 1.49 7.30 -51.93 -0.38 1.11 16 23 H 0.09 1.77 6.23 -51.93 -0.32 1.45 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.11 1.99 6.64 -51.93 -0.34 1.64 16 30 H 0.05 1.15 5.66 -51.93 -0.29 0.86 16 31 H 0.01 0.17 6.87 -51.93 -0.36 -0.19 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 256.90 15.07 3.87 3.87 Total: -1.00 -29.38 256.90 -6.05 -35.43 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -4.46 Total: 0.68 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.50 Total: -2.85 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.03 Total: -40.16 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.38 -6.05 -35.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261273960.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.698 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds