Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.50697 * 109.47049 * 120.00340 * 2 1 3 5 5 H 1.08007 * 119.99779 * 114.69790 * 4 2 1 6 6 C 1.37877 * 120.00158 * 294.69475 * 4 2 1 7 7 N 1.31511 * 119.99920 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00054 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47198 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46694 * 119.99836 * 8 6 4 11 11 H 1.48500 * 109.47198 * 239.99774 * 8 6 4 12 12 N 1.46906 * 109.46729 * 240.00241 * 2 1 3 13 13 C 1.47902 * 110.99522 * 176.07998 * 12 2 1 14 14 C 1.53999 * 107.05420 * 214.15227 * 13 12 2 15 15 C 1.54594 * 105.14106 * 1.22893 * 14 13 12 16 16 H 1.08991 * 110.72660 * 263.59598 * 15 14 13 17 17 C 1.50703 * 110.72492 * 140.48771 * 15 14 13 18 18 N 1.34783 * 119.99646 * 61.45462 * 17 15 14 19 19 O 1.21283 * 120.00356 * 241.45580 * 17 15 14 20 20 C 1.48531 * 111.00083 * 58.68495 * 12 2 1 21 21 H 1.09008 * 109.46952 * 299.99994 * 1 2 3 22 22 H 1.09005 * 109.47486 * 59.99518 * 1 2 3 23 23 H 1.09004 * 109.47624 * 179.97438 * 1 2 3 24 24 H 0.96997 * 120.00305 * 179.97438 * 7 6 4 25 25 H 1.08989 * 109.92095 * 333.50876 * 13 12 2 26 26 H 1.09003 * 109.91550 * 94.80875 * 13 12 2 27 27 H 1.09003 * 110.30411 * 120.14184 * 14 13 12 28 28 H 1.09001 * 110.31087 * 242.31039 * 14 13 12 29 29 H 0.96997 * 120.00016 * 359.97438 * 18 17 15 30 30 H 0.96999 * 119.99763 * 179.97438 * 18 17 15 31 31 H 1.09002 * 110.66629 * 278.15319 * 20 12 2 32 32 H 1.09004 * 110.66567 * 41.28470 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5808 -1.6359 1.1335 6 6 1.7917 -0.1792 2.4798 7 7 1.1244 0.9479 2.5977 8 14 2.4150 -1.0595 4.0049 9 1 3.1325 -2.2964 3.6040 10 1 3.3427 -0.1681 4.7465 11 1 1.2660 -1.4135 4.8764 12 7 2.0196 -0.6925 -1.1995 13 6 3.4950 -0.6310 -1.2818 14 6 3.8608 -0.5421 -2.7751 15 6 2.5073 -0.5253 -3.5220 16 1 2.2428 -1.5260 -3.8635 17 6 2.5495 0.4376 -4.6806 18 7 3.4256 0.2439 -5.6863 19 8 1.7950 1.3868 -4.7079 20 6 1.5175 -0.0375 -2.4345 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 0.9548 1.3215 3.4766 25 1 3.8597 0.2518 -0.7570 26 1 3.9290 -1.5310 -0.8463 27 1 4.4145 0.3753 -2.9749 28 1 4.4468 -1.4114 -3.0735 29 1 4.0292 -0.5151 -5.6642 30 1 3.4525 0.8634 -6.4321 31 1 0.5038 -0.3685 -2.6606 32 1 1.5564 1.0475 -2.3376 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300331550.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = -68.807334 kcal Electronic energy + Delta-G solvation = -14479.050157 eV Core-core repulsion = 12051.920427 eV Total energy + Delta-G solvation = -2427.129730 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.05272 -39.07967 -35.71105 -34.64372 -33.05181 -30.28477 -29.32361 -27.16796 -24.33855 -22.65114 -21.26212 -20.80545 -18.59683 -18.10154 -17.66442 -17.16706 -16.53538 -15.72737 -15.40465 -14.86171 -14.73352 -14.21712 -14.09390 -13.49973 -13.16237 -12.86669 -12.60475 -12.52561 -12.27756 -12.13756 -11.99989 -11.74893 -11.56622 -10.95065 -10.90214 -10.64108 -10.55006 -9.09104 -8.13201 -6.25093 1.42050 1.43198 1.55957 1.61965 2.41480 2.57302 3.16983 3.41534 3.61810 3.77959 4.09790 4.38290 4.42341 4.62439 4.74317 4.83528 4.87494 4.95633 5.00715 5.09273 5.14957 5.29501 5.41246 5.67474 5.71386 5.92881 6.17528 6.30888 6.48447 6.59064 6.90266 7.37762 7.44763 8.95292 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.057554 B = 0.007565 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.381150 B = 3700.259960 C = 3992.714304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.207 3.793 3 H -0.039 1.039 4 C -0.514 4.514 5 H 0.062 0.938 6 C 0.006 3.994 7 N -0.927 5.927 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.516 5.516 13 C 0.045 3.955 14 C -0.105 4.105 15 C -0.105 4.105 16 H 0.137 0.863 17 C 0.527 3.473 18 N -0.829 5.829 19 O -0.596 6.596 20 C 0.053 3.947 21 H 0.050 0.950 22 H 0.024 0.976 23 H 0.039 0.961 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.420 0.580 30 H 0.408 0.592 31 H 0.074 0.926 32 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.421 -5.498 -13.731 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 H -0.022 1.022 4 C -0.552 4.552 5 H 0.080 0.920 6 C -0.192 4.192 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.208 1.208 11 H -0.206 1.206 12 N -0.241 5.241 13 C -0.084 4.084 14 C -0.143 4.143 15 C -0.127 4.127 16 H 0.155 0.845 17 C 0.312 3.688 18 N -0.393 5.393 19 O -0.476 6.476 20 C -0.076 4.076 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.252 0.748 30 H 0.240 0.760 31 H 0.092 0.908 32 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.649 -5.390 -13.406 15.905 hybrid contribution 0.433 0.943 0.856 1.345 sum 7.082 -4.447 -12.550 15.081 Atomic orbital electron populations 1.21604 0.97604 0.99409 0.99042 1.19243 0.92580 0.90169 0.88025 1.02163 1.21376 1.34827 1.08229 0.90812 0.92016 1.25826 0.95456 0.95670 1.02277 1.70083 1.41686 1.20646 1.24275 0.85391 0.78018 0.78700 0.78832 1.18647 1.20773 1.20618 1.64836 1.06833 1.50837 1.01572 1.22687 0.89008 1.00291 0.96374 1.22422 0.95029 1.04155 0.92699 1.22205 0.97653 1.00349 0.92519 0.84511 1.20625 0.79275 0.84887 0.84012 1.43599 1.39222 1.32953 1.23502 1.90735 1.43494 1.33553 1.79835 1.22927 0.98875 0.95766 0.90042 0.93145 0.95734 0.94139 0.92952 0.96706 0.90333 0.91245 0.86245 0.74790 0.76040 0.90791 0.96601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.16 8.84 71.98 0.64 -5.53 16 2 C 0.21 11.15 1.66 44.17 0.07 11.22 16 3 H -0.04 -2.40 7.98 -2.39 -0.02 -2.42 16 4 C -0.51 -28.99 8.03 25.60 0.21 -28.78 16 5 H 0.06 3.41 7.69 -2.91 -0.02 3.39 16 6 C 0.01 0.33 5.32 84.66 0.45 0.78 16 7 N -0.93 -55.53 11.72 21.45 0.25 -55.28 16 8 Si 0.97 44.25 29.54 68.60 2.03 46.28 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.52 -22.66 5.10 -862.23 -4.40 -27.06 16 13 C 0.04 1.67 5.89 86.45 0.51 2.18 16 14 C -0.10 -2.61 6.44 31.47 0.20 -2.41 16 15 C -0.11 -2.84 3.44 -10.33 -0.04 -2.88 16 16 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 17 C 0.53 14.06 7.31 87.66 0.64 14.70 16 18 N -0.83 -12.28 8.82 -173.52 -1.53 -13.82 16 19 O -0.60 -22.45 16.64 -3.04 -0.05 -22.50 16 20 C 0.05 2.06 4.39 86.65 0.38 2.44 16 21 H 0.05 2.86 6.50 -2.38 -0.02 2.84 16 22 H 0.02 1.15 6.91 -2.38 -0.02 1.14 16 23 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 24 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 25 H 0.01 0.63 7.67 -2.39 -0.02 0.61 16 26 H 0.08 2.83 8.13 -2.39 -0.02 2.81 16 27 H 0.07 1.67 7.84 -2.39 -0.02 1.65 16 28 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.42 3.13 8.82 -92.71 -0.82 2.32 16 30 H 0.41 5.13 8.93 -92.71 -0.83 4.30 16 31 H 0.07 2.88 7.66 -2.39 -0.02 2.86 16 32 H 0.02 0.72 7.41 -2.38 -0.02 0.70 16 Total: -1.00 -73.14 262.75 -1.16 -74.30 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -0.52 Total: 6.36 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 3.06 Total: -8.27 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -5.68 Total: -96.16 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.14 -1.16 -74.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300331550.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.488 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds