Wall clock time and date at job start Mon Mar 30 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 11 11 O 1.42907 * 109.46691 * 59.99721 * 9 7 2 12 12 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 13 13 C 1.53007 * 109.47287 * 299.99955 * 12 9 7 14 14 C 1.52991 * 109.46005 * 164.04540 * 13 12 9 15 15 C 1.52985 * 109.51210 * 315.99203 * 14 13 12 16 16 C 1.53005 * 109.47155 * 112.93191 * 15 14 13 17 17 C 1.53005 * 109.43472 * 284.04285 * 16 15 14 18 18 C 1.52991 * 109.48308 * 75.95971 * 17 16 15 19 19 C 1.52997 * 109.50675 * 247.06790 * 18 17 16 20 20 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 21 21 H 0.96700 * 114.00202 * 60.00567 * 11 9 7 22 22 H 1.08996 * 109.46646 * 60.00565 * 12 9 7 23 23 H 1.09001 * 109.47729 * 284.04220 * 13 12 9 24 24 H 1.09005 * 109.47399 * 44.05287 * 13 12 9 25 25 H 1.08995 * 109.46559 * 195.97412 * 14 13 12 26 26 H 1.08999 * 109.45829 * 75.99484 * 14 13 12 27 27 H 1.09004 * 109.46969 * 352.93373 * 15 14 13 28 28 H 1.08997 * 109.47225 * 232.93219 * 15 14 13 29 29 H 1.09000 * 109.47586 * 164.05972 * 16 15 14 30 30 H 1.08993 * 109.47919 * 44.03555 * 16 15 14 31 31 H 1.09004 * 109.46854 * 315.96105 * 17 16 15 32 32 H 1.08994 * 109.47176 * 195.96766 * 17 16 15 33 33 H 1.09001 * 109.45846 * 127.05497 * 18 17 16 34 34 H 1.08994 * 109.45951 * 7.07454 * 18 17 16 35 35 H 1.09005 * 109.46822 * 284.01634 * 19 18 17 36 36 H 1.09001 * 109.47170 * 164.01278 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8752 -0.6796 -0.8894 11 8 3.9874 -0.5210 1.1675 12 6 4.0216 -2.6365 -0.0001 13 6 3.5111 -3.3581 1.2489 14 6 3.6714 -4.8686 1.0661 15 6 3.2141 -5.2646 -0.3391 16 6 4.4182 -5.7479 -1.1500 17 6 5.2543 -4.5433 -1.5870 18 6 6.0616 -4.0234 -0.3959 19 6 5.5517 -2.6364 0.0005 20 1 -0.4850 0.8400 -0.0004 21 1 3.7018 -0.9251 1.9983 22 1 3.6587 -3.1500 -0.8904 23 1 4.0861 -3.0341 2.1163 24 1 2.4583 -3.1202 1.4012 25 1 3.0646 -5.3904 1.8061 26 1 4.7185 -5.1412 1.1975 27 1 2.7667 -4.4016 -0.8323 28 1 2.4780 -6.0654 -0.2694 29 1 4.0703 -6.2874 -2.0309 30 1 5.0281 -6.4100 -0.5355 31 1 4.5943 -3.7554 -1.9501 32 1 5.9347 -4.8432 -2.3839 33 1 7.1142 -3.9585 -0.6712 34 1 5.9477 -4.7064 0.4458 35 1 5.9154 -1.8978 -0.7139 36 1 5.9148 -2.3871 0.9976 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300794452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:54 Heat of formation + Delta-G solvation = -68.157096 kcal Electronic energy + Delta-G solvation = -15416.980438 eV Core-core repulsion = 13093.419248 eV Total energy + Delta-G solvation = -2323.561190 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23994 -35.87984 -32.42611 -32.16835 -32.06408 -28.13357 -25.60549 -25.17681 -21.92901 -20.99302 -20.28784 -18.33272 -17.12861 -15.60910 -15.02070 -14.74181 -13.88579 -13.75060 -13.66276 -13.29152 -12.92410 -12.78810 -12.17891 -11.91113 -11.42573 -11.23314 -10.92957 -10.83947 -10.68948 -10.55534 -10.36447 -10.25758 -9.98529 -9.61290 -9.32244 -9.27154 -8.87151 -8.60086 -8.25111 -6.07943 -4.17607 3.47548 3.51017 3.64466 4.54567 4.98982 5.16415 5.18973 5.23956 5.46724 5.57804 5.65592 5.70553 5.71972 5.78238 5.99125 6.02322 6.17599 6.29705 6.33254 6.35036 6.40256 6.47987 6.53138 6.57583 6.72332 6.79938 6.83068 6.89279 7.16983 7.22280 7.48075 7.68247 8.35068 8.88591 9.08065 9.57265 11.02364 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.040659 B = 0.010218 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.484419 B = 2739.523955 C = 2996.898357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.079 3.921 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.308 1.308 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.077 0.923 9 C 0.191 3.809 10 H 0.055 0.945 11 O -0.588 6.588 12 C -0.118 4.118 13 C -0.113 4.113 14 C -0.123 4.123 15 C -0.131 4.131 16 C -0.115 4.115 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.109 4.109 20 H 0.263 0.737 21 H 0.358 0.642 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.080 0.920 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.378 -8.988 -0.034 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.125 4.125 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.236 1.236 6 H -0.194 1.194 7 C -0.591 4.591 8 H 0.095 0.905 9 C 0.134 3.866 10 H 0.073 0.927 11 O -0.395 6.395 12 C -0.136 4.136 13 C -0.150 4.150 14 C -0.160 4.160 15 C -0.168 4.168 16 C -0.152 4.152 17 C -0.167 4.167 18 C -0.163 4.163 19 C -0.146 4.146 20 H 0.073 0.927 21 H 0.205 0.795 22 H 0.108 0.892 23 H 0.067 0.933 24 H 0.099 0.901 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.506 -8.507 -0.489 12.766 hybrid contribution 0.040 0.486 0.394 0.627 sum 9.546 -8.021 -0.095 12.469 Atomic orbital electron populations 1.69967 1.06611 1.27263 1.49514 1.25053 0.94649 0.99923 0.92893 0.86266 0.79176 0.81897 0.78365 1.20647 1.23604 1.19421 1.21628 0.90083 0.94613 1.52795 0.90536 1.20025 0.93637 0.87845 0.85060 0.92717 1.86343 1.77633 1.58689 1.16809 1.22142 0.93362 0.98838 0.99254 1.21655 1.02784 0.93287 0.97316 1.21823 1.00596 0.97326 0.96235 1.21845 0.97138 1.01413 0.96396 1.21671 0.97086 0.97203 0.99253 1.21837 0.98820 0.98381 0.97631 1.21870 0.98115 0.98099 0.98195 1.21616 0.96814 0.95305 1.00904 0.92721 0.79511 0.89168 0.93256 0.90127 0.93322 0.91916 0.89817 0.93122 0.92882 0.92584 0.90319 0.93194 0.93414 0.91380 0.92943 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.91 23.53 26.18 -169.99 -4.45 19.08 16 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.27 -6.90 6.54 56.52 0.37 -6.53 16 7 C -0.55 -15.03 8.39 -34.44 -0.29 -15.32 16 8 H 0.08 2.21 7.08 -52.49 -0.37 1.84 16 9 C 0.19 4.43 2.05 -27.88 -0.06 4.37 16 10 H 0.06 1.35 7.20 -51.93 -0.37 0.98 16 11 O -0.59 -13.43 10.63 -35.23 -0.37 -13.81 16 12 C -0.12 -2.20 1.44 -90.61 -0.13 -2.33 16 13 C -0.11 -1.98 4.23 -26.73 -0.11 -2.09 16 14 C -0.12 -1.82 5.48 -26.74 -0.15 -1.96 16 15 C -0.13 -1.92 5.47 -26.74 -0.15 -2.07 16 16 C -0.11 -1.48 5.59 -26.73 -0.15 -1.63 16 17 C -0.13 -1.76 5.47 -26.73 -0.15 -1.91 16 18 C -0.13 -1.73 5.48 -26.74 -0.15 -1.88 16 19 C -0.11 -1.79 4.73 -26.73 -0.13 -1.92 16 20 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 21 H 0.36 7.37 7.74 45.56 0.35 7.72 16 22 H 0.09 1.71 2.83 -51.93 -0.15 1.56 16 23 H 0.05 0.82 7.28 -51.93 -0.38 0.44 16 24 H 0.08 1.64 6.26 -51.93 -0.33 1.31 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.86 4.69 -51.93 -0.24 0.62 16 27 H 0.08 1.43 5.47 -51.93 -0.28 1.15 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.67 7.47 -51.93 -0.39 0.28 16 31 H 0.08 1.21 5.47 -51.93 -0.28 0.92 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.91 4.69 -51.93 -0.24 0.66 16 35 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 36 H 0.06 0.95 7.81 -51.93 -0.41 0.54 16 LS Contribution 256.38 15.07 3.86 3.86 Total: -1.00 -29.38 256.38 -6.53 -35.90 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.79 Total: 5.98 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -1.55 Total: -24.57 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.77 Total: -26.45 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.37 Total: -13.81 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.45 Total: 19.08 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.38 -6.53 -35.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300794452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.256 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds