Wall clock time and date at job start Mon Mar 30 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47128 * 300.00338 * 3 2 1 6 6 H 1.48494 * 109.47116 * 60.00476 * 3 2 1 7 7 C 1.37873 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00129 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.54246 * 108.89840 * 296.39809 * 12 11 10 14 14 C 1.50551 * 108.48820 * 159.17552 * 13 12 11 15 15 C 1.54059 * 112.41467 * 94.26568 * 14 13 12 16 16 C 1.54072 * 112.81751 * 318.28434 * 15 14 13 17 17 C 1.50475 * 112.49368 * 318.27849 * 16 15 14 18 18 C 1.45539 * 108.90122 * 173.60607 * 12 11 10 19 19 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47017 * 60.00460 * 9 7 2 21 21 H 1.08999 * 109.47472 * 300.00137 * 9 7 2 22 22 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 23 23 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 24 24 H 1.09000 * 108.87638 * 54.99859 * 12 11 10 25 25 H 1.09001 * 109.62686 * 278.97938 * 13 12 11 26 26 H 1.09003 * 109.62383 * 39.54791 * 13 12 11 27 27 H 1.08998 * 108.91961 * 333.51164 * 14 13 12 28 28 H 1.08999 * 108.91653 * 215.01919 * 14 13 12 29 29 H 1.09000 * 108.81846 * 197.42154 * 15 14 13 30 30 H 1.09004 * 108.72528 * 79.08259 * 15 14 13 31 31 H 1.09003 * 108.87842 * 197.50758 * 16 15 14 32 32 H 1.08992 * 108.87850 * 79.05827 * 16 15 14 33 33 H 1.09002 * 109.62942 * 334.45043 * 17 16 15 34 34 H 1.09002 * 109.63043 * 213.86433 * 17 16 15 35 35 H 1.09005 * 108.89099 * 303.44891 * 18 12 11 36 36 H 1.09004 * 108.89303 * 62.02755 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 6 3.4599 -5.8505 -1.3065 14 6 4.7903 -6.5237 -1.0978 15 6 4.7837 -7.9936 -1.5591 16 6 3.4939 -8.7380 -1.1641 17 6 3.0421 -8.4057 0.2323 18 6 2.0149 -7.2577 0.1546 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 0.9451 -4.9822 0.8903 23 1 0.9446 -4.9827 -0.8897 24 1 3.3153 -5.7862 0.8454 25 1 2.9200 -6.3452 -2.1139 26 1 3.6167 -4.8012 -1.5563 27 1 5.0421 -6.4878 -0.0379 28 1 5.5523 -5.9817 -1.6579 29 1 5.6360 -8.5060 -1.1129 30 1 4.8867 -8.0203 -2.6440 31 1 3.6715 -9.8114 -1.2311 32 1 2.7029 -8.4690 -1.8641 33 1 3.8982 -8.0911 0.8290 34 1 2.5783 -9.2819 0.6854 35 1 1.4191 -7.2546 1.0674 36 1 1.3559 -7.4325 -0.6959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300979726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:51 Heat of formation + Delta-G solvation = -84.905194 kcal Electronic energy + Delta-G solvation = -14390.239282 eV Core-core repulsion = 12065.951840 eV Total energy + Delta-G solvation = -2324.287442 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.09696 -36.38750 -33.13873 -32.38228 -31.87558 -27.59334 -25.92739 -24.53185 -22.65602 -22.05201 -20.01318 -19.14818 -16.44518 -15.69533 -15.33539 -15.14496 -14.51130 -14.36774 -13.93741 -13.42688 -12.99213 -12.81614 -12.36999 -12.09836 -11.99428 -11.37897 -11.11237 -10.87992 -10.83226 -10.59710 -10.42259 -10.30728 -10.19321 -10.16027 -10.02349 -9.67336 -9.05845 -8.78440 -8.13149 -6.09229 -4.10721 3.30189 3.36521 3.43189 4.35680 4.61585 4.76871 4.91601 5.07320 5.23853 5.27285 5.33159 5.40456 5.52410 5.54254 5.70293 5.82133 5.92129 6.00048 6.09252 6.14362 6.19575 6.25039 6.27252 6.34424 6.39950 6.47045 6.55486 6.75671 6.83145 7.14977 7.46146 7.82027 8.18399 8.62963 9.03907 9.54327 11.02472 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.058651 B = 0.005712 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.288460 B = 4901.070281 C = 5226.654915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.394 6.394 11 C 0.065 3.935 12 C -0.083 4.083 13 C -0.109 4.109 14 C -0.117 4.117 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.111 4.111 19 H 0.263 0.737 20 H 0.004 0.996 21 H 0.004 0.996 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 -15.616 -1.502 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.314 6.314 11 C -0.012 4.012 12 C -0.102 4.102 13 C -0.146 4.146 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.149 4.149 19 H 0.073 0.927 20 H 0.022 0.978 21 H 0.021 0.979 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.810 -15.462 -1.505 16.586 hybrid contribution -0.080 0.893 0.014 0.896 sum 5.730 -14.569 -1.491 15.726 Atomic orbital electron populations 1.69979 1.06116 1.26997 1.50768 1.24955 0.94967 0.99436 0.95194 0.86292 0.80040 0.82633 0.77610 1.19472 1.20847 1.20846 1.21110 0.94084 0.89403 1.50524 0.91517 1.20185 0.88815 0.83715 0.95285 1.87830 1.35452 1.12989 1.95133 1.22371 0.94439 0.85659 0.98771 1.20042 0.97628 0.93547 0.98963 1.21332 0.95022 1.01637 0.96626 1.21347 0.98095 0.94587 1.01434 1.21924 0.97231 0.95783 1.00419 1.21340 0.97919 0.99060 0.97238 1.21296 0.99067 0.97787 0.97050 1.20476 0.98109 0.94419 1.01887 0.92743 0.97813 0.97853 0.94879 0.94777 0.90995 0.92374 0.90316 0.92190 0.92545 0.92794 0.92654 0.92879 0.92066 0.91602 0.92268 0.92338 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -15.38 9.43 -34.44 -0.32 -15.70 16 8 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 9 C 0.19 5.47 5.69 36.00 0.20 5.68 16 10 O -0.39 -9.74 9.54 -35.23 -0.34 -10.08 16 11 C 0.07 1.26 5.23 37.16 0.19 1.46 16 12 C -0.08 -1.29 1.94 -93.49 -0.18 -1.47 16 13 C -0.11 -1.63 4.95 -27.30 -0.14 -1.76 16 14 C -0.12 -1.48 5.32 -27.40 -0.15 -1.63 16 15 C -0.12 -1.22 5.85 -25.62 -0.15 -1.37 16 16 C -0.12 -1.20 5.31 -27.43 -0.15 -1.35 16 17 C -0.11 -1.22 5.61 -27.34 -0.15 -1.38 16 18 C -0.11 -1.40 4.44 -29.60 -0.13 -1.53 16 19 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 20 H 0.00 0.12 8.14 -51.93 -0.42 -0.31 16 21 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 22 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.16 7.46 -51.93 -0.39 0.78 16 25 H 0.06 0.81 6.97 -51.93 -0.36 0.45 16 26 H 0.08 1.40 7.33 -51.93 -0.38 1.02 16 27 H 0.06 0.77 6.63 -51.93 -0.34 0.42 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.65 6.62 -51.93 -0.34 0.30 16 33 H 0.07 0.72 6.98 -51.93 -0.36 0.36 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.72 8.04 -51.93 -0.42 0.30 16 36 H 0.06 0.73 7.46 -51.93 -0.39 0.35 16 LS Contribution 279.71 15.07 4.22 4.22 Total: -1.00 -30.67 279.71 -7.80 -38.47 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -6.33 Total: -5.57 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.07 Total: -17.53 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.34 Total: -10.08 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.67 -7.80 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300979726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.435 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds