Wall clock time and date at job start Mon Mar 30 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47019 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47128 * 300.00338 * 3 2 1 6 6 H 1.48494 * 109.47116 * 60.00476 * 3 2 1 7 7 C 1.37873 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00129 * 359.97438 * 7 2 1 10 10 O 1.42902 * 109.47205 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00186 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.54246 * 108.89840 * 296.39809 * 12 11 10 14 14 C 1.50551 * 108.48820 * 159.17552 * 13 12 11 15 15 C 1.54059 * 112.41467 * 94.26568 * 14 13 12 16 16 C 1.54072 * 112.81751 * 318.28434 * 15 14 13 17 17 C 1.50475 * 112.49368 * 318.27849 * 16 15 14 18 18 C 1.45539 * 108.90122 * 173.60607 * 12 11 10 19 19 H 0.96998 * 119.99585 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.47017 * 60.00460 * 9 7 2 21 21 H 1.08999 * 109.47472 * 300.00137 * 9 7 2 22 22 H 1.09002 * 109.47259 * 300.00293 * 11 10 9 23 23 H 1.09001 * 109.47074 * 60.00315 * 11 10 9 24 24 H 1.09000 * 108.87638 * 54.99859 * 12 11 10 25 25 H 1.09001 * 109.62686 * 278.97938 * 13 12 11 26 26 H 1.09003 * 109.62383 * 39.54791 * 13 12 11 27 27 H 1.08998 * 108.91961 * 333.51164 * 14 13 12 28 28 H 1.08999 * 108.91653 * 215.01919 * 14 13 12 29 29 H 1.09000 * 108.81846 * 197.42154 * 15 14 13 30 30 H 1.09004 * 108.72528 * 79.08259 * 15 14 13 31 31 H 1.09003 * 108.87842 * 197.50758 * 16 15 14 32 32 H 1.08992 * 108.87850 * 79.05827 * 16 15 14 33 33 H 1.09002 * 109.62942 * 334.45043 * 17 16 15 34 34 H 1.09002 * 109.63043 * 213.86433 * 17 16 15 35 35 H 1.09005 * 108.89099 * 303.44891 * 18 12 11 36 36 H 1.09004 * 108.89303 * 62.02755 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5650 -4.8754 0.0000 12 6 2.6479 -5.9562 0.0006 13 6 3.4599 -5.8505 -1.3065 14 6 4.7903 -6.5237 -1.0978 15 6 4.7837 -7.9936 -1.5591 16 6 3.4939 -8.7380 -1.1641 17 6 3.0421 -8.4057 0.2323 18 6 2.0149 -7.2577 0.1546 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5566 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 0.9451 -4.9822 0.8903 23 1 0.9446 -4.9827 -0.8897 24 1 3.3153 -5.7862 0.8454 25 1 2.9200 -6.3452 -2.1139 26 1 3.6167 -4.8012 -1.5563 27 1 5.0421 -6.4878 -0.0379 28 1 5.5523 -5.9817 -1.6579 29 1 5.6360 -8.5060 -1.1129 30 1 4.8867 -8.0203 -2.6440 31 1 3.6715 -9.8114 -1.2311 32 1 2.7029 -8.4690 -1.8641 33 1 3.8982 -8.0911 0.8290 34 1 2.5783 -9.2819 0.6854 35 1 1.4191 -7.2546 1.0674 36 1 1.3559 -7.4325 -0.6959 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300979726.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:51 Heat of formation + Delta-G solvation = -102.525914 kcal Electronic energy + Delta-G solvation = -14391.003374 eV Core-core repulsion = 12065.951840 eV Total energy + Delta-G solvation = -2325.051534 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28660 -38.17537 -35.04737 -33.87791 -32.91780 -29.65050 -27.38926 -25.58931 -24.51931 -23.62034 -21.20641 -20.08815 -18.67916 -17.35299 -16.82198 -16.61003 -16.32751 -15.58851 -15.33771 -14.90040 -14.39370 -13.89219 -13.82141 -13.62180 -13.08350 -12.94262 -12.89034 -12.78827 -12.56234 -12.14344 -11.59672 -11.48722 -11.44068 -11.23065 -11.16287 -11.15816 -10.97417 -10.85689 -10.24842 -8.34544 -6.47491 1.38731 1.40515 1.55350 2.33353 2.99137 3.12829 3.66161 3.90375 3.97036 4.22041 4.28690 4.33826 4.44034 4.49276 4.50249 4.61697 4.66259 4.80507 4.89680 4.98507 5.09189 5.12021 5.15411 5.20263 5.30591 5.37149 5.40065 5.43083 5.51856 5.54805 5.58998 5.64833 5.93465 6.51591 6.80172 7.24959 8.78288 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.058651 B = 0.005712 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.288460 B = 4901.070281 C = 5226.654915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.208 3.792 10 O -0.407 6.407 11 C 0.055 3.945 12 C -0.071 4.071 13 C -0.106 4.106 14 C -0.115 4.115 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.109 4.109 18 C -0.111 4.111 19 H 0.271 0.729 20 H -0.016 1.016 21 H -0.016 1.016 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.742 -16.352 -1.577 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.587 4.587 8 H 0.080 0.920 9 C 0.133 3.867 10 O -0.326 6.326 11 C -0.022 4.022 12 C -0.090 4.090 13 C -0.144 4.144 14 C -0.153 4.153 15 C -0.150 4.150 16 C -0.156 4.156 17 C -0.146 4.146 18 C -0.149 4.149 19 H 0.080 0.920 20 H 0.002 0.998 21 H 0.002 0.998 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.787 -16.226 -1.580 17.659 hybrid contribution -0.440 1.071 0.038 1.159 sum 6.347 -15.154 -1.542 16.502 Atomic orbital electron populations 1.70082 1.07825 1.28664 1.50482 1.25995 0.95983 1.03478 0.93780 0.85103 0.78613 0.77108 0.78378 1.18825 1.19517 1.19502 1.21417 0.94084 0.90828 1.52338 0.92046 1.19828 0.88688 0.84883 0.93316 1.87801 1.35376 1.14342 1.95129 1.22760 0.96143 0.84345 0.98970 1.20036 0.96309 0.93653 0.98973 1.21277 0.96649 0.99826 0.96607 1.21307 0.96363 0.96218 1.01398 1.21900 0.98190 0.93990 1.00912 1.21358 0.97432 1.00218 0.96628 1.21275 0.98372 0.97362 0.97639 1.20471 0.98735 0.93403 1.02277 0.91974 0.99803 0.99824 0.94574 0.94568 0.91818 0.91395 0.93928 0.92477 0.92578 0.91353 0.92025 0.90876 0.92510 0.91801 0.90338 0.92012 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.99 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -33.71 9.43 25.60 0.24 -33.47 16 8 H 0.06 3.74 7.81 -2.91 -0.02 3.71 16 9 C 0.21 12.20 5.69 71.24 0.41 12.60 16 10 O -0.41 -20.89 9.54 -148.98 -1.42 -22.31 16 11 C 0.05 2.17 5.23 71.98 0.38 2.55 16 12 C -0.07 -2.20 1.94 -12.65 -0.02 -2.23 16 13 C -0.11 -3.18 4.95 30.22 0.15 -3.03 16 14 C -0.12 -2.80 5.32 30.16 0.16 -2.64 16 15 C -0.11 -2.09 5.85 31.32 0.18 -1.91 16 16 C -0.12 -2.07 5.31 30.14 0.16 -1.91 16 17 C -0.11 -2.04 5.61 30.20 0.17 -1.87 16 18 C -0.11 -2.65 4.44 28.74 0.13 -2.52 16 19 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 20 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 21 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 22 H 0.04 1.40 8.05 -2.39 -0.02 1.38 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 2.07 7.46 -2.39 -0.02 2.05 16 25 H 0.07 1.87 6.97 -2.39 -0.02 1.85 16 26 H 0.04 1.57 7.33 -2.39 -0.02 1.55 16 27 H 0.06 1.41 6.63 -2.39 -0.02 1.39 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.05 6.62 -2.39 -0.02 1.04 16 33 H 0.06 1.24 6.98 -2.39 -0.02 1.23 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.43 8.04 -2.38 -0.02 1.41 16 36 H 0.06 1.48 7.46 -2.38 -0.02 1.46 16 Total: -1.00 -66.35 279.71 4.32 -62.03 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.02 Total: 3.53 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 2.41 Total: -33.60 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 0.28 Total: -56.75 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.42 Total: -22.31 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.35 4.32 -62.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300979726.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.495 kcal (2) G-P(sol) polarization free energy of solvation -66.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds