Wall clock time and date at job start Mon Mar 30 2020 02:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46826 * 111.00243 * 2 1 4 4 C 1.53294 * 109.40339 * 189.75555 * 3 2 1 5 5 C 1.51436 * 108.24378 * 306.20543 * 4 3 2 6 6 N 1.27950 * 121.11539 * 228.75601 * 5 4 3 7 7 O 1.41604 * 120.00417 * 179.97438 * 6 5 4 8 8 C 1.42894 * 113.99965 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.46677 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00251 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99636 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99753 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 120.00186 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47200 * 89.99419 * 13 11 9 15 15 H 1.48496 * 109.47213 * 209.99693 * 13 11 9 16 16 H 1.48506 * 109.47097 * 329.99825 * 13 11 9 17 17 C 1.51436 * 117.77455 * 49.02699 * 5 4 3 18 18 C 1.46826 * 111.00293 * 124.68655 * 2 1 3 19 19 H 1.08993 * 109.47512 * 60.00000 * 1 2 3 20 20 H 1.09003 * 109.47061 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47158 * 299.99658 * 1 2 3 22 22 H 1.09008 * 109.48165 * 69.77577 * 3 2 1 23 23 H 1.09007 * 109.49243 * 309.74134 * 3 2 1 24 24 H 1.09002 * 109.71148 * 186.52155 * 4 3 2 25 25 H 1.08993 * 109.74483 * 65.91285 * 4 3 2 26 26 H 1.08998 * 109.47318 * 299.99918 * 8 7 6 27 27 H 1.08997 * 109.47156 * 60.00373 * 8 7 6 28 28 H 0.96998 * 119.99751 * 180.02562 * 12 11 9 29 29 H 1.08995 * 109.71362 * 70.66199 * 17 5 4 30 30 H 1.08999 * 109.70863 * 191.28670 * 17 5 4 31 31 H 1.08997 * 109.48553 * 290.22469 * 18 2 1 32 32 H 1.09002 * 109.48419 * 50.26958 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3707 0.0000 4 6 3.5080 1.3354 -0.2450 5 6 4.1319 0.4063 0.7752 6 7 5.1552 0.7628 1.4556 7 8 5.7193 -0.1247 2.4038 8 6 6.8564 0.4033 3.0894 9 6 7.3720 -0.6195 4.0689 10 1 6.8807 -1.5771 4.1584 11 6 8.4716 -0.3331 4.8499 12 7 8.9218 -1.2259 5.7042 13 14 9.3218 1.3228 4.6945 14 1 8.7073 2.2858 5.6433 15 1 10.7649 1.1699 5.0096 16 1 9.1691 1.8294 3.3069 17 6 3.5081 -0.9614 0.9586 18 6 1.9952 -0.7801 1.1271 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.7938 1.8374 0.9643 23 1 1.5122 1.9457 -0.7902 24 1 3.9223 2.3372 -0.1315 25 1 3.7097 0.9660 -1.2504 26 1 7.6376 0.6417 2.3676 27 1 6.5695 1.3074 3.6263 28 1 9.6951 -1.0242 6.2539 29 1 3.7091 -1.5777 0.0824 30 1 3.9224 -1.4382 1.8469 31 1 1.7939 -0.2528 2.0596 32 1 1.5123 -1.7570 1.1500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306165599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:49 Heat of formation + Delta-G solvation = 10.829190 kcal Electronic energy + Delta-G solvation = -13904.750237 eV Core-core repulsion = 11481.073806 eV Total energy + Delta-G solvation = -2423.676431 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.95989 -36.54588 -34.22366 -32.55109 -31.16233 -29.91827 -27.62382 -25.20247 -23.49021 -21.92871 -21.41990 -18.66706 -17.01987 -16.16871 -15.36934 -15.22706 -14.76232 -14.46606 -14.39513 -13.75899 -13.56758 -13.28663 -12.64519 -12.40417 -12.23395 -11.84629 -11.31245 -11.26353 -11.15327 -11.04278 -10.80718 -10.42190 -10.01093 -9.51778 -8.91184 -8.82327 -8.54012 -8.36022 -6.16870 -4.17481 2.52500 3.25321 3.31487 3.36935 3.50681 3.80005 4.33677 4.68112 4.89073 5.06850 5.10157 5.15709 5.29162 5.36312 5.38644 5.47035 5.55459 5.67696 5.71002 5.87677 5.97606 6.13682 6.46215 6.68369 6.86787 6.93465 7.01787 7.23954 7.53515 8.14774 8.55572 8.90583 9.40735 10.95500 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063439 B = 0.005941 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.264218 B = 4712.107890 C = 5001.318785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.061 3.939 4 C -0.056 4.056 5 C 0.107 3.893 6 N -0.346 5.346 7 O -0.220 6.220 8 C 0.180 3.820 9 C -0.524 4.524 10 H 0.082 0.918 11 C 0.078 3.922 12 N -0.893 5.893 13 Si 0.877 3.123 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.263 1.263 17 C -0.111 4.111 18 C 0.064 3.936 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.024 0.976 22 H 0.038 0.962 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.012 0.988 27 H 0.006 0.994 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.036 0.964 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.994 4.644 -11.898 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.068 4.068 4 C -0.094 4.094 5 C -0.087 4.087 6 N -0.088 5.088 7 O -0.238 6.238 8 C 0.105 3.895 9 C -0.563 4.563 10 H 0.100 0.900 11 C -0.125 4.125 12 N -0.531 5.531 13 Si 0.703 3.297 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.188 1.188 17 C -0.151 4.151 18 C -0.065 4.065 19 H 0.086 0.914 20 H 0.087 0.913 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.030 0.970 27 H 0.024 0.976 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.055 0.945 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.083 4.896 -11.939 19.101 hybrid contribution 0.011 0.608 0.888 1.077 sum -14.072 5.504 -11.051 18.720 Atomic orbital electron populations 1.22338 0.87206 1.02124 1.00546 1.61790 1.07536 1.13585 1.44272 1.22114 0.94552 0.89304 1.00845 1.20626 0.93405 0.98473 0.96913 1.24988 0.92616 0.95856 0.95217 1.75836 1.09552 1.21696 1.01696 1.89918 1.47625 1.36000 1.50224 1.20623 0.82353 0.95744 0.90816 1.20803 1.13635 1.02379 1.19478 0.89976 1.24686 0.96144 0.97218 0.94456 1.69860 1.24984 1.34514 1.23695 0.86821 0.79174 0.84273 0.79440 1.19795 1.20651 1.18777 1.21298 0.94200 0.95386 1.04192 1.22079 0.95041 0.98084 0.91299 0.91351 0.91315 0.95724 0.94405 0.89909 0.89683 0.88891 0.97025 0.97568 0.92169 0.89460 0.89006 0.94530 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.57 60.06 0.57 0.79 16 2 N -0.55 -6.02 4.83 -242.66 -1.17 -7.19 16 3 C 0.06 0.64 5.50 -3.71 -0.02 0.62 16 4 C -0.06 -0.68 6.34 -27.37 -0.17 -0.85 16 5 C 0.11 1.81 6.61 -78.21 -0.52 1.29 16 6 N -0.35 -7.40 11.31 35.93 0.41 -7.00 16 7 O -0.22 -5.58 9.99 -11.47 -0.11 -5.70 16 8 C 0.18 4.89 5.22 36.01 0.19 5.07 16 9 C -0.52 -15.87 9.99 -34.43 -0.34 -16.21 16 10 H 0.08 2.68 8.06 -52.49 -0.42 2.25 16 11 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 12 N -0.89 -27.63 13.96 55.43 0.77 -26.86 16 13 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 17 C -0.11 -1.69 6.11 -27.36 -0.17 -1.86 16 18 C 0.06 0.79 5.51 -3.71 -0.02 0.77 16 19 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 20 H 0.07 0.53 8.04 -51.93 -0.42 0.11 16 21 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 22 H 0.04 0.43 8.10 -51.92 -0.42 0.01 16 23 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 27 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 28 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.64 6.99 -51.93 -0.36 1.27 16 31 H 0.04 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 LS Contribution 267.75 15.07 4.03 4.03 Total: -1.00 -32.81 267.75 -6.24 -39.05 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -4.93 Total: -5.36 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.58 Total: -8.17 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.01 Total: -41.04 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.11 Total: -5.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.81 -6.24 -39.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306165599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.884 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds