Wall clock time and date at job start Mon Mar 30 2020 02:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46826 * 111.00243 * 2 1 4 4 C 1.53294 * 109.40339 * 189.75555 * 3 2 1 5 5 C 1.51436 * 108.24378 * 306.20543 * 4 3 2 6 6 N 1.27950 * 121.11539 * 228.75601 * 5 4 3 7 7 O 1.41604 * 120.00417 * 179.97438 * 6 5 4 8 8 C 1.42894 * 113.99965 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.46677 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00251 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99636 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99753 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 120.00186 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47200 * 89.99419 * 13 11 9 15 15 H 1.48496 * 109.47213 * 209.99693 * 13 11 9 16 16 H 1.48506 * 109.47097 * 329.99825 * 13 11 9 17 17 C 1.51436 * 117.77455 * 49.02699 * 5 4 3 18 18 C 1.46826 * 111.00293 * 124.68655 * 2 1 3 19 19 H 1.08993 * 109.47512 * 60.00000 * 1 2 3 20 20 H 1.09003 * 109.47061 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47158 * 299.99658 * 1 2 3 22 22 H 1.09008 * 109.48165 * 69.77577 * 3 2 1 23 23 H 1.09007 * 109.49243 * 309.74134 * 3 2 1 24 24 H 1.09002 * 109.71148 * 186.52155 * 4 3 2 25 25 H 1.08993 * 109.74483 * 65.91285 * 4 3 2 26 26 H 1.08998 * 109.47318 * 299.99918 * 8 7 6 27 27 H 1.08997 * 109.47156 * 60.00373 * 8 7 6 28 28 H 0.96998 * 119.99751 * 180.02562 * 12 11 9 29 29 H 1.08995 * 109.71362 * 70.66199 * 17 5 4 30 30 H 1.08999 * 109.70863 * 191.28670 * 17 5 4 31 31 H 1.08997 * 109.48553 * 290.22469 * 18 2 1 32 32 H 1.09002 * 109.48419 * 50.26958 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3707 0.0000 4 6 3.5080 1.3354 -0.2450 5 6 4.1319 0.4063 0.7752 6 7 5.1552 0.7628 1.4556 7 8 5.7193 -0.1247 2.4038 8 6 6.8564 0.4033 3.0894 9 6 7.3720 -0.6195 4.0689 10 1 6.8807 -1.5771 4.1584 11 6 8.4716 -0.3331 4.8499 12 7 8.9218 -1.2259 5.7042 13 14 9.3218 1.3228 4.6945 14 1 8.7073 2.2858 5.6433 15 1 10.7649 1.1699 5.0096 16 1 9.1691 1.8294 3.3069 17 6 3.5081 -0.9614 0.9586 18 6 1.9952 -0.7801 1.1271 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.7938 1.8374 0.9643 23 1 1.5122 1.9457 -0.7902 24 1 3.9223 2.3372 -0.1315 25 1 3.7097 0.9660 -1.2504 26 1 7.6376 0.6417 2.3676 27 1 6.5695 1.3074 3.6263 28 1 9.6951 -1.0242 6.2539 29 1 3.7091 -1.5777 0.0824 30 1 3.9224 -1.4382 1.8469 31 1 1.7939 -0.2528 2.0596 32 1 1.5123 -1.7570 1.1500 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306165599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:49 Heat of formation + Delta-G solvation = -13.555882 kcal Electronic energy + Delta-G solvation = -13905.807653 eV Core-core repulsion = 11481.073806 eV Total energy + Delta-G solvation = -2424.733847 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05276 -38.16888 -35.76992 -34.66091 -32.21218 -31.32259 -29.58051 -26.15693 -24.63089 -23.88035 -22.57633 -20.10997 -18.96740 -17.69111 -17.04560 -16.23136 -16.16050 -16.12222 -15.57471 -15.13835 -14.91417 -14.82424 -14.38363 -13.57724 -13.27122 -13.16091 -12.90928 -12.75846 -12.45135 -12.21374 -12.13527 -11.94465 -11.89567 -11.66361 -10.96844 -10.53598 -10.30782 -9.33232 -8.46292 -6.56283 1.10049 1.29503 1.32042 1.44727 1.83771 2.23904 2.86209 2.92753 3.52893 3.89595 4.01729 4.08859 4.24965 4.39712 4.51838 4.57848 4.59464 4.71367 4.80870 4.87030 4.88481 4.91434 5.07119 5.10159 5.13550 5.29083 5.50267 6.01787 6.06126 6.16007 6.45761 6.71730 7.07624 8.70168 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.063439 B = 0.005941 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.264218 B = 4712.107890 C = 5001.318785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.063 3.937 4 C -0.053 4.053 5 C 0.128 3.872 6 N -0.383 5.383 7 O -0.259 6.259 8 C 0.198 3.802 9 C -0.552 4.552 10 H 0.035 0.965 11 C 0.024 3.976 12 N -0.934 5.934 13 Si 0.954 3.046 14 H -0.257 1.257 15 H -0.265 1.265 16 H -0.253 1.253 17 C -0.115 4.115 18 C 0.072 3.928 19 H 0.088 0.912 20 H 0.076 0.924 21 H 0.024 0.976 22 H 0.029 0.971 23 H 0.119 0.881 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.011 0.989 27 H 0.009 0.991 28 H 0.277 0.723 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.223 6.672 -13.871 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.276 5.276 3 C -0.066 4.066 4 C -0.091 4.091 5 C -0.065 4.065 6 N -0.130 5.130 7 O -0.272 6.272 8 C 0.122 3.878 9 C -0.590 4.590 10 H 0.053 0.947 11 C -0.175 4.175 12 N -0.572 5.572 13 Si 0.775 3.225 14 H -0.182 1.182 15 H -0.189 1.189 16 H -0.177 1.177 17 C -0.155 4.155 18 C -0.057 4.057 19 H 0.107 0.893 20 H 0.095 0.905 21 H 0.043 0.957 22 H 0.047 0.953 23 H 0.137 0.863 24 H 0.112 0.888 25 H 0.135 0.865 26 H 0.029 0.971 27 H 0.027 0.973 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.325 6.889 -13.896 21.804 hybrid contribution 0.180 -0.138 1.372 1.391 sum -15.145 6.752 -12.524 20.780 Atomic orbital electron populations 1.22432 0.85200 1.03071 1.01533 1.61813 1.09274 1.13598 1.42888 1.22195 0.93168 0.89472 1.01776 1.20898 0.94337 0.97780 0.96117 1.26095 0.90130 0.97105 0.93202 1.75997 1.12544 1.21059 1.03369 1.89832 1.47352 1.37974 1.52037 1.20186 0.83096 0.94353 0.90159 1.21010 1.14635 1.01735 1.21658 0.94702 1.25713 0.96445 1.02002 0.93370 1.69990 1.25734 1.37088 1.24416 0.85623 0.78354 0.78316 0.80194 1.18185 1.18920 1.17701 1.21342 0.96351 0.94539 1.03237 1.21967 0.92811 0.99439 0.91523 0.89316 0.90541 0.95694 0.95282 0.86324 0.88824 0.86457 0.97126 0.97339 0.91349 0.87828 0.92567 0.95897 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 127.69 1.22 1.55 16 2 N -0.55 -10.32 4.83 -921.64 -4.45 -14.77 16 3 C 0.06 1.09 5.50 86.42 0.48 1.57 16 4 C -0.05 -1.14 6.34 30.18 0.19 -0.94 16 5 C 0.13 4.21 6.61 47.01 0.31 4.52 16 6 N -0.38 -16.54 11.31 -40.10 -0.45 -16.99 16 7 O -0.26 -13.78 9.99 -38.79 -0.39 -14.17 16 8 C 0.20 11.06 5.22 71.24 0.37 11.43 16 9 C -0.55 -35.07 9.99 25.60 0.26 -34.81 16 10 H 0.03 2.45 8.06 -2.91 -0.02 2.42 16 11 C 0.02 1.47 5.47 84.66 0.46 1.93 16 12 N -0.93 -59.30 13.96 21.45 0.30 -59.00 16 13 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 15 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.25 -11.50 6.54 99.48 0.65 -10.85 16 17 C -0.11 -3.49 6.11 30.18 0.18 -3.30 16 18 C 0.07 1.68 5.51 86.42 0.48 2.15 16 19 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 20 H 0.08 0.91 8.04 -2.39 -0.02 0.89 16 21 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 22 H 0.03 0.57 8.10 -2.38 -0.02 0.55 16 23 H 0.12 1.32 8.07 -2.38 -0.02 1.30 16 24 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.01 0.60 7.20 -2.39 -0.02 0.58 16 27 H 0.01 0.47 7.57 -2.39 -0.02 0.46 16 28 H 0.28 16.02 8.31 -92.71 -0.77 15.25 16 29 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.06 2.12 6.99 -2.39 -0.02 2.10 16 31 H 0.02 0.60 8.10 -2.39 -0.02 0.58 16 32 H 0.10 1.93 8.01 -2.39 -0.02 1.92 16 Total: -1.00 -74.44 267.75 1.87 -72.57 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 1.03 Total: 1.28 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 3.95 Total: -15.90 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -4.60 Total: -90.76 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.39 Total: -14.17 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -74.44 1.87 -72.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306165599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.012 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds