Wall clock time and date at job start Mon Mar 30 2020 03:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46787 * 2 1 4 4 C 1.52995 * 109.46675 * 119.99401 * 2 1 3 5 5 C 1.52993 * 109.49559 * 305.03319 * 4 2 1 6 6 C 1.53095 * 109.47819 * 184.99785 * 4 2 1 7 7 C 1.53185 * 109.16405 * 182.40970 * 6 4 2 8 8 C 1.53176 * 109.03260 * 56.98506 * 7 6 4 9 9 C 1.53091 * 109.16492 * 303.01966 * 8 7 6 10 10 H 1.09003 * 109.48350 * 177.59612 * 9 8 7 11 11 C 1.50701 * 109.48988 * 297.62062 * 9 8 7 12 12 H 1.07999 * 119.99606 * 5.48378 * 11 9 8 13 13 C 1.37875 * 120.00264 * 185.48436 * 11 9 8 14 14 N 1.31509 * 119.99892 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 120.00136 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46801 * 59.99769 * 15 13 11 17 17 H 1.48494 * 109.47059 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46884 * 299.99846 * 15 13 11 19 19 O 1.42901 * 109.41496 * 57.60946 * 9 8 7 20 20 H 1.09000 * 109.47862 * 300.00188 * 1 2 3 21 21 H 1.09004 * 109.47009 * 60.00318 * 1 2 3 22 22 H 1.08998 * 109.47195 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47358 * 239.99861 * 2 1 3 24 24 H 1.08995 * 109.46922 * 299.99812 * 3 2 1 25 25 H 1.08998 * 109.47285 * 59.99817 * 3 2 1 26 26 H 1.09003 * 109.46769 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47062 * 317.38794 * 5 4 2 28 28 H 1.08996 * 109.47218 * 77.38795 * 5 4 2 29 29 H 1.09004 * 109.47313 * 197.39047 * 5 4 2 30 30 H 1.08993 * 109.52575 * 302.32148 * 6 4 2 31 31 H 1.09007 * 109.51854 * 62.50945 * 6 4 2 32 32 H 1.08993 * 109.54123 * 176.85156 * 7 6 4 33 33 H 1.08997 * 109.54403 * 297.11936 * 7 6 4 34 34 H 1.08995 * 109.52378 * 183.11276 * 8 7 6 35 35 H 1.09002 * 109.52221 * 62.92696 * 8 7 6 36 36 H 0.97006 * 120.00278 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.4295 -0.0769 2.4956 6 6 3.5656 -0.6133 1.3140 7 6 4.0733 -1.3882 2.5340 8 6 3.5968 -2.8408 2.4368 9 6 2.0699 -2.8627 2.3286 10 1 1.7281 -3.8916 2.2162 11 6 1.4689 -2.2670 3.5757 12 1 2.1088 -1.8283 4.3270 13 6 0.1023 -2.2821 3.7574 14 7 -0.6769 -2.8159 2.8423 15 14 -0.6427 -1.5431 5.3029 16 1 -0.2857 -0.1040 5.3851 17 1 -2.1202 -1.6842 5.2565 18 1 -0.1143 -2.2531 6.4953 19 8 1.6632 -2.0985 1.1917 20 1 -0.3635 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.4474 1.0078 2.3897 28 1 0.3993 -0.4137 2.6111 29 1 2.0068 -0.3659 3.3738 30 1 3.9995 -1.0357 0.4078 31 1 3.8533 0.4344 1.4025 32 1 5.1627 -1.3625 2.5549 33 1 3.6790 -0.9353 3.4436 34 1 3.9067 -3.3862 3.3281 35 1 4.0313 -3.3083 1.5531 36 1 -1.6385 -2.8262 2.9700 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306167002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:11 Heat of formation + Delta-G solvation = -70.062368 kcal Electronic energy + Delta-G solvation = -16031.721020 eV Core-core repulsion = 13708.077211 eV Total energy + Delta-G solvation = -2323.643809 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88666 -36.51650 -34.43968 -34.04030 -31.05959 -29.47369 -28.01440 -26.09990 -24.74252 -23.61083 -20.88799 -19.69686 -18.07548 -17.11768 -16.51984 -15.90847 -15.65945 -14.98233 -14.83069 -14.47243 -14.17290 -13.76970 -13.37721 -13.17457 -13.03252 -12.75641 -12.69464 -12.38894 -12.31578 -12.03792 -11.86469 -11.76818 -11.51832 -11.40535 -11.05558 -10.89650 -10.34524 -10.23733 -9.49425 -8.01936 -6.05761 1.39309 1.41165 1.46147 2.43573 3.16454 3.64946 4.01182 4.15360 4.28815 4.34537 4.48364 4.54276 4.67174 4.77739 4.84943 4.89741 4.97545 4.99591 5.07964 5.13351 5.17070 5.25680 5.32411 5.35694 5.46206 5.50825 5.54670 5.58708 5.74028 5.79180 5.92332 6.15803 6.30533 6.84750 7.30839 7.55953 9.03326 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.028327 B = 0.015515 C = 0.012644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.228665 B = 1804.328974 C = 2214.000030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.139 4.139 4 C 0.128 3.872 5 C -0.150 4.150 6 C -0.133 4.133 7 C -0.109 4.109 8 C -0.136 4.136 9 C 0.206 3.794 10 H 0.020 0.980 11 C -0.536 4.536 12 H 0.059 0.941 13 C 0.040 3.960 14 N -0.897 5.897 15 Si 0.922 3.078 16 H -0.265 1.265 17 H -0.291 1.291 18 H -0.272 1.272 19 O -0.395 6.395 20 H 0.040 0.960 21 H 0.063 0.937 22 H 0.029 0.971 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 7.382 -3.097 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.100 4.100 3 C -0.196 4.196 4 C 0.089 3.911 5 C -0.207 4.207 6 C -0.171 4.171 7 C -0.146 4.146 8 C -0.174 4.174 9 C 0.150 3.850 10 H 0.038 0.962 11 C -0.574 4.574 12 H 0.077 0.923 13 C -0.161 4.161 14 N -0.535 5.535 15 Si 0.748 3.252 16 H -0.190 1.190 17 H -0.217 1.217 18 H -0.197 1.197 19 O -0.315 6.315 20 H 0.059 0.941 21 H 0.082 0.918 22 H 0.048 0.952 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.089 7.258 -3.299 10.032 hybrid contribution -0.804 -0.130 1.134 1.396 sum 5.285 7.128 -2.165 9.134 Atomic orbital electron populations 1.21621 0.95925 1.00488 1.00543 1.21064 0.95638 0.96668 0.96625 1.21896 1.01591 0.93878 1.02209 1.21162 0.92428 0.83061 0.94473 1.22791 1.02005 0.96430 0.99475 1.22159 0.96111 1.00759 0.98070 1.21501 0.99537 0.95021 0.98567 1.22069 0.97777 0.97545 1.00047 1.19559 0.89578 0.90885 0.85016 0.96175 1.21537 0.91962 1.39127 1.04773 0.92323 1.25461 0.97809 0.95433 0.97431 1.70149 1.03924 1.44677 1.34778 0.86195 0.77374 0.79995 0.81649 1.18968 1.21652 1.19689 1.87846 1.80089 1.19790 1.43810 0.94078 0.91841 0.95180 0.92027 0.91212 0.92629 0.91289 0.94933 0.93844 0.91146 0.92334 0.89948 0.91173 0.92287 0.92386 0.93394 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 8.66 71.98 0.62 -4.29 16 2 C -0.08 -2.91 2.52 -10.79 -0.03 -2.93 16 3 C -0.14 -3.78 8.50 71.98 0.61 -3.17 16 4 C 0.13 5.31 0.57 -10.77 -0.01 5.30 16 5 C -0.15 -6.58 5.82 71.98 0.42 -6.16 16 6 C -0.13 -4.64 4.34 30.69 0.13 -4.51 16 7 C -0.11 -3.91 5.63 30.72 0.17 -3.74 16 8 C -0.14 -5.65 5.60 30.68 0.17 -5.47 16 9 C 0.21 10.52 3.07 29.88 0.09 10.61 16 10 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 11 C -0.54 -28.17 4.70 25.60 0.12 -28.05 16 12 H 0.06 3.01 6.04 -2.91 -0.02 2.99 16 13 C 0.04 2.17 3.41 84.65 0.29 2.46 16 14 N -0.90 -52.51 13.07 21.45 0.28 -52.23 16 15 Si 0.92 42.87 29.25 68.60 2.01 44.87 16 16 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 O -0.40 -20.15 9.39 -148.98 -1.40 -21.54 16 20 H 0.04 1.62 6.75 -2.39 -0.02 1.60 16 21 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 22 H 0.03 1.36 7.82 -2.39 -0.02 1.34 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.05 1.54 6.27 -2.39 -0.01 1.53 16 26 H 0.07 1.67 6.40 -2.39 -0.02 1.65 16 27 H 0.03 1.24 5.98 -2.39 -0.01 1.22 16 28 H 0.04 2.18 4.85 -2.39 -0.01 2.17 16 29 H 0.07 3.20 3.48 -2.38 -0.01 3.19 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 2.43 6.50 -2.38 -0.02 2.42 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.06 2.26 5.33 -2.39 -0.01 2.25 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 Total: -1.00 -59.89 258.73 4.54 -55.35 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.05 Total: 13.49 kcal Atomic # 6 Polarization: -42.54 SS G_CDS: 2.60 Total: -39.94 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.28 Total: -52.23 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -1.40 Total: -21.54 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.01 Total: 44.87 kcal Total: -59.89 4.54 -55.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306167002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.713 kcal (2) G-P(sol) polarization free energy of solvation -59.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds