Wall clock time and date at job start Mon Mar 30 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99660 * 2 1 4 4 H 1.08003 * 120.00056 * 203.16683 * 3 2 1 5 5 C 1.38808 * 120.00225 * 23.16835 * 3 2 1 6 6 N 1.31627 * 119.99804 * 13.77028 * 5 3 2 7 7 Si 1.86800 * 120.00248 * 193.77032 * 5 3 2 8 8 H 1.48492 * 109.47435 * 84.99110 * 7 5 3 9 9 H 1.48504 * 109.47130 * 204.99191 * 7 5 3 10 10 H 1.48506 * 109.46970 * 324.98843 * 7 5 3 11 11 C 1.46499 * 120.00416 * 180.02562 * 2 1 3 12 12 N 1.46501 * 109.47057 * 90.00107 * 11 2 1 13 13 C 1.45761 * 117.94482 * 269.74041 * 12 11 2 14 14 C 1.53096 * 110.38593 * 160.74458 * 13 12 11 15 15 C 1.53351 * 108.53099 * 51.11486 * 14 13 12 16 16 C 1.53079 * 108.42136 * 292.30981 * 15 14 13 17 17 C 1.33351 * 117.95001 * 90.00187 * 12 11 2 18 18 O 1.21280 * 118.24548 * 2.24380 * 17 12 11 19 19 H 1.09001 * 109.47245 * 275.15524 * 1 2 3 20 20 H 1.09000 * 109.47514 * 35.16217 * 1 2 3 21 21 H 1.08997 * 109.46662 * 155.15930 * 1 2 3 22 22 H 0.97000 * 119.99672 * 179.97438 * 6 5 3 23 23 H 1.08996 * 109.47213 * 209.99953 * 11 2 1 24 24 H 1.08998 * 109.46780 * 330.00191 * 11 2 1 25 25 H 1.08996 * 109.29855 * 281.23709 * 13 12 11 26 26 H 1.08997 * 109.30062 * 40.61509 * 13 12 11 27 27 H 1.09004 * 109.81133 * 291.32625 * 14 13 12 28 28 H 1.08997 * 109.67955 * 170.82467 * 14 13 12 29 29 H 1.08995 * 109.67901 * 172.57724 * 15 14 13 30 30 H 1.08998 * 109.70314 * 52.05817 * 15 14 13 31 31 H 1.08994 * 109.40113 * 288.76817 * 16 15 14 32 32 H 1.08994 * 109.32739 * 168.98773 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1643 1.2237 -0.3680 5 6 1.5395 2.3396 0.4729 6 7 0.4225 2.2572 1.1644 7 14 2.3035 4.0089 0.1281 8 1 1.8595 4.4909 -1.2044 9 1 1.8750 4.9746 1.1717 10 1 3.7836 3.8885 0.1430 11 6 2.1976 -1.2687 -0.0006 12 7 2.4418 -1.6909 -1.3820 13 6 1.4433 -2.5365 -2.0244 14 6 1.6010 -2.4855 -3.5464 15 6 3.0671 -2.7702 -3.8943 16 6 3.9186 -1.5999 -3.3958 17 6 3.5661 -1.2820 -1.9710 18 8 4.3458 -0.6182 -1.3213 19 1 -0.3634 0.0923 1.0235 20 1 -0.3634 0.8401 -0.5918 21 1 -0.3632 -0.9326 -0.4317 22 1 -0.0036 3.0634 1.4952 23 1 3.1499 -1.1385 0.5133 24 1 1.6085 -2.0285 0.5129 25 1 1.5655 -3.5634 -1.6802 26 1 0.4471 -2.1856 -1.7553 27 1 1.3232 -1.4976 -3.9138 28 1 0.9628 -3.2397 -4.0070 29 1 3.1756 -2.8690 -4.9744 30 1 3.3882 -3.6911 -3.4076 31 1 3.7321 -0.7252 -4.0188 32 1 4.9730 -1.8693 -3.4565 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306187068.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:56 Heat of formation + Delta-G solvation = -13.957715 kcal Electronic energy + Delta-G solvation = -14905.904268 eV Core-core repulsion = 12481.152996 eV Total energy + Delta-G solvation = -2424.751272 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71999 -35.89738 -35.41954 -32.89873 -30.54982 -29.20992 -26.20110 -25.45894 -23.77550 -22.18920 -20.75490 -18.09767 -16.79722 -15.92953 -15.66186 -15.40894 -14.54435 -13.93399 -13.75307 -13.44224 -13.11685 -12.85093 -12.76672 -11.83642 -11.40844 -11.21580 -11.01254 -10.86028 -10.79259 -10.74527 -10.56191 -10.34354 -9.90061 -9.82731 -8.96345 -8.51049 -7.99974 -6.81992 -5.67111 -3.13365 3.38509 3.45371 3.50991 3.56837 3.83054 4.60332 4.90552 4.92237 4.96160 5.14218 5.52470 5.55258 5.62229 5.75687 5.82245 5.85438 5.99872 6.00623 6.05906 6.16167 6.35068 6.67628 6.71591 7.16563 7.40383 7.70245 8.03211 8.26082 8.47951 8.97950 9.32086 9.90666 10.36821 11.38512 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.037835 B = 0.010463 C = 0.009212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.878498 B = 2675.562326 C = 3038.782191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.587 5.587 3 C -0.250 4.250 4 H 0.083 0.917 5 C 0.000 4.000 6 N -0.912 5.912 7 Si 0.905 3.095 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.278 1.278 11 C 0.345 3.655 12 N -0.611 5.611 13 C 0.113 3.887 14 C -0.135 4.135 15 C -0.119 4.119 16 C -0.138 4.138 17 C 0.514 3.486 18 O -0.551 6.551 19 H 0.036 0.964 20 H 0.039 0.961 21 H -0.003 1.003 22 H 0.251 0.749 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -11.165 -8.944 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.309 5.309 3 C -0.380 4.380 4 H 0.101 0.899 5 C -0.198 4.198 6 N -0.557 5.557 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.203 1.203 11 C 0.136 3.864 12 N -0.350 5.350 13 C -0.011 4.011 14 C -0.173 4.173 15 C -0.157 4.157 16 C -0.178 4.178 17 C 0.301 3.699 18 O -0.429 6.429 19 H 0.054 0.946 20 H 0.058 0.942 21 H 0.016 0.984 22 H 0.061 0.939 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.124 -10.654 -8.472 13.658 hybrid contribution 0.091 0.994 -0.346 1.057 sum 1.215 -9.659 -8.817 13.135 Atomic orbital electron populations 1.20906 0.82884 0.95282 0.99708 1.44511 1.02021 1.01548 1.82818 1.19550 0.98721 0.85094 1.34638 0.89933 1.25043 0.97925 0.98626 0.98204 1.70082 1.20307 1.27172 1.38150 0.86246 0.79077 0.83894 0.77276 1.21642 1.21819 1.20295 1.20856 0.97110 0.87296 0.81140 1.49255 1.19281 1.49352 1.17074 1.21326 0.93360 0.94123 0.92315 1.21882 0.96784 1.02782 0.95846 1.21613 0.95013 0.98078 1.00966 1.21689 1.01345 0.99947 0.94827 1.19948 0.81786 0.79459 0.88736 1.90696 1.48990 1.39026 1.64219 0.94565 0.94188 0.98402 0.93895 0.90108 0.92535 0.92803 0.91049 0.91056 0.90720 0.91387 0.91547 0.89027 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 8.98 59.85 0.54 4.39 16 2 N -0.59 -15.27 3.16 -184.86 -0.58 -15.86 16 3 C -0.25 -7.35 9.57 -15.06 -0.14 -7.49 16 4 H 0.08 2.55 6.48 -52.48 -0.34 2.21 16 5 C 0.00 -0.01 5.08 -17.43 -0.09 -0.10 16 6 N -0.91 -27.37 10.76 55.49 0.60 -26.77 16 7 Si 0.90 23.36 29.58 -169.99 -5.03 18.33 16 8 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 9 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 10 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 11 C 0.34 7.54 5.73 -63.75 -0.37 7.18 16 12 N -0.61 -11.52 3.05 -178.57 -0.54 -12.07 16 13 C 0.11 1.62 6.32 -4.39 -0.03 1.59 16 14 C -0.14 -1.59 6.03 -26.50 -0.16 -1.75 16 15 C -0.12 -1.32 6.03 -26.51 -0.16 -1.48 16 16 C -0.14 -2.00 6.03 -28.10 -0.17 -2.16 16 17 C 0.51 10.19 7.47 -11.87 -0.09 10.11 16 18 O -0.55 -13.51 14.75 5.56 0.08 -13.43 16 19 H 0.04 0.96 7.33 -51.93 -0.38 0.58 16 20 H 0.04 1.07 7.37 -51.93 -0.38 0.68 16 21 H 0.00 -0.05 6.50 -51.93 -0.34 -0.39 16 22 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.08 1.94 7.03 -51.93 -0.37 1.57 16 24 H 0.06 1.09 7.94 -51.93 -0.41 0.67 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.07 6.57 -51.93 -0.34 0.73 16 27 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 258.37 15.07 3.89 3.89 Total: -1.00 -33.41 258.37 -6.90 -40.31 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -4.65 Total: -4.68 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -0.67 Total: 10.27 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.53 Total: -54.69 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.43 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -5.03 Total: 18.33 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.41 -6.90 -40.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306187068.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.354 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds