Wall clock time and date at job start Mon Mar 30 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47410 * 2 1 4 4 C 1.50701 * 109.47085 * 239.99520 * 2 1 3 5 5 H 1.07993 * 120.00640 * 240.00033 * 4 2 1 6 6 C 1.37884 * 119.99653 * 60.00356 * 4 2 1 7 7 N 1.31516 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99758 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47277 * 60.00226 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47069 * 299.99858 * 8 6 4 12 12 N 1.46901 * 109.47105 * 120.00222 * 2 1 3 13 13 C 1.46904 * 110.99636 * 275.00038 * 12 2 1 14 14 H 1.09000 * 110.88721 * 31.18660 * 13 12 2 15 15 C 1.54861 * 111.03638 * 267.29121 * 13 12 2 16 16 C 1.51282 * 104.20513 * 217.09867 * 15 13 12 17 17 O 1.21284 * 124.94166 * 196.28279 * 16 15 13 18 18 N 1.34415 * 110.11730 * 16.26751 * 16 15 13 19 19 C 1.46510 * 124.34968 * 180.38698 * 18 16 15 20 20 C 1.46760 * 111.30303 * 0.40627 * 18 16 15 21 21 H 1.08997 * 109.47165 * 300.00366 * 1 2 3 22 22 H 1.09003 * 109.47113 * 59.99872 * 1 2 3 23 23 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00041 * 180.02562 * 7 6 4 25 25 H 1.00891 * 111.00483 * 151.04740 * 12 2 1 26 26 H 1.08998 * 110.46775 * 98.42770 * 15 13 12 27 27 H 1.08993 * 110.60550 * 335.83923 * 15 13 12 28 28 H 1.09008 * 109.46474 * 270.02434 * 19 18 16 29 29 H 1.08995 * 109.46834 * 30.01620 * 19 18 16 30 30 H 1.08996 * 109.46956 * 150.02297 * 19 18 16 31 31 H 1.09002 * 110.24740 * 101.98470 * 20 18 16 32 32 H 1.09002 * 110.24616 * 223.89995 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3224 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8279 -0.4194 -5.2205 11 1 3.8074 -1.1192 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 1 1.3069 0.9855 2.2784 15 6 3.4854 0.8668 2.4681 16 6 3.7294 0.9472 3.9589 17 8 4.5778 1.6339 4.4879 18 7 2.8691 0.1472 4.6120 19 6 2.8261 -0.0065 6.0684 20 6 1.9788 -0.5530 3.6789 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.7090 1.1613 -3.4845 25 1 2.9172 -1.1205 1.0288 26 1 3.4866 1.8635 2.0271 27 1 4.2382 0.2389 1.9917 28 1 3.4888 -0.8185 6.3678 29 1 3.1507 0.9204 6.5413 30 1 1.8069 -0.2357 6.3796 31 1 2.3095 -1.5826 3.5426 32 1 0.9535 -0.5325 4.0484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:43 Heat of formation + Delta-G solvation = -33.118488 kcal Electronic energy + Delta-G solvation = -14263.279757 eV Core-core repulsion = 11837.697612 eV Total energy + Delta-G solvation = -2425.582146 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15353 -36.79170 -35.23029 -32.97172 -30.92686 -28.01432 -27.12180 -25.67891 -25.02857 -21.21508 -19.87264 -19.30257 -16.92506 -16.21373 -16.14917 -15.19942 -14.85894 -13.99106 -13.67372 -13.49885 -13.43382 -12.81843 -12.51182 -12.21761 -12.20908 -11.60805 -11.34695 -10.98191 -10.90608 -10.68114 -10.43176 -10.23843 -10.06932 -9.64401 -8.93912 -8.60558 -8.53325 -7.46194 -6.08888 -4.16006 2.76794 3.15983 3.28101 3.33062 3.35386 4.34117 4.55987 4.83552 5.04149 5.22515 5.24621 5.31193 5.39096 5.61716 5.66736 5.81059 5.83741 6.12840 6.27417 6.62282 6.77717 7.04849 7.11465 7.21624 7.39654 7.70110 7.79218 8.16756 8.24378 8.33225 8.51852 8.92619 9.50433 10.97370 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054852 B = 0.006780 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.339883 B = 4128.956382 C = 4294.379470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.006 0.994 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.674 5.674 13 C 0.083 3.917 14 H 0.093 0.907 15 C -0.183 4.183 16 C 0.520 3.480 17 O -0.546 6.546 18 N -0.626 5.626 19 C 0.097 3.903 20 C 0.109 3.891 21 H 0.004 0.996 22 H 0.082 0.918 23 H 0.033 0.967 24 H 0.262 0.738 25 H 0.336 0.664 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -2.339 10.769 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.023 0.977 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.030 4.030 14 H 0.111 0.889 15 C -0.225 4.225 16 C 0.308 3.692 17 O -0.424 6.424 18 N -0.361 5.361 19 C -0.045 4.045 20 C -0.014 4.014 21 H 0.023 0.977 22 H 0.100 0.900 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.155 0.845 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.300 -2.130 11.129 11.335 hybrid contribution 0.986 0.031 -1.062 1.449 sum 1.286 -2.099 10.067 10.364 Atomic orbital electron populations 1.21751 0.97747 0.99495 0.99486 1.19145 0.92645 0.92569 0.85173 0.97668 1.21187 1.31830 1.12689 0.90383 0.92184 1.24909 0.94945 0.94943 0.99079 1.69876 1.36384 1.22735 1.23727 0.86569 0.79109 0.79758 0.82023 1.20174 1.21286 1.20300 1.60683 1.32357 1.31676 1.05791 1.22523 0.94500 0.94207 0.91722 0.88879 1.23225 1.00969 1.05081 0.93260 1.21034 0.79917 0.78019 0.90231 1.90671 1.34994 1.42415 1.74308 1.48275 1.36256 1.44908 1.06637 1.21490 1.01877 1.02102 0.79048 1.22252 0.93689 0.96676 0.88786 0.97659 0.89989 0.94826 0.92765 0.84468 0.88247 0.87737 0.92895 0.91053 0.91151 0.90474 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.18 37.16 0.34 -2.61 16 2 C 0.21 4.98 2.47 -68.87 -0.17 4.81 16 3 H 0.01 0.14 7.86 -51.93 -0.41 -0.26 16 4 C -0.52 -13.60 8.59 -34.44 -0.30 -13.90 16 5 H 0.06 1.53 7.62 -52.49 -0.40 1.13 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.67 -12.83 6.16 -99.11 -0.61 -13.44 16 13 C 0.08 1.33 3.24 -65.95 -0.21 1.12 16 14 H 0.09 1.57 7.25 -51.93 -0.38 1.20 16 15 C -0.18 -2.92 6.55 -26.62 -0.17 -3.10 16 16 C 0.52 8.66 8.02 -10.86 -0.09 8.57 16 17 O -0.55 -10.84 17.60 5.55 0.10 -10.75 16 18 N -0.63 -8.67 3.33 -180.28 -0.60 -9.27 16 19 C 0.10 1.04 10.96 59.85 0.66 1.70 16 20 C 0.11 1.45 7.08 -3.12 -0.02 1.43 16 21 H 0.00 0.09 7.53 -51.93 -0.39 -0.30 16 22 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.34 6.25 7.59 -39.30 -0.30 5.95 16 26 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 27 H 0.10 1.62 7.58 -51.93 -0.39 1.23 16 28 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.81 7.93 -51.93 -0.41 0.39 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -29.30 267.18 -6.20 -35.50 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -4.66 Total: 2.63 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -0.06 Total: -0.37 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.58 Total: -46.67 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.10 Total: -10.75 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.30 -6.20 -35.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.385 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds