Wall clock time and date at job start Mon Mar 30 2020 02:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47410 * 2 1 4 4 C 1.50701 * 109.47085 * 239.99520 * 2 1 3 5 5 H 1.07993 * 120.00640 * 240.00033 * 4 2 1 6 6 C 1.37884 * 119.99653 * 60.00356 * 4 2 1 7 7 N 1.31516 * 120.00142 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99758 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47277 * 60.00226 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47069 * 299.99858 * 8 6 4 12 12 N 1.46901 * 109.47105 * 120.00222 * 2 1 3 13 13 C 1.46904 * 110.99636 * 275.00038 * 12 2 1 14 14 H 1.09000 * 110.88721 * 31.18660 * 13 12 2 15 15 C 1.54861 * 111.03638 * 267.29121 * 13 12 2 16 16 C 1.51282 * 104.20513 * 217.09867 * 15 13 12 17 17 O 1.21284 * 124.94166 * 196.28279 * 16 15 13 18 18 N 1.34415 * 110.11730 * 16.26751 * 16 15 13 19 19 C 1.46510 * 124.34968 * 180.38698 * 18 16 15 20 20 C 1.46760 * 111.30303 * 0.40627 * 18 16 15 21 21 H 1.08997 * 109.47165 * 300.00366 * 1 2 3 22 22 H 1.09003 * 109.47113 * 59.99872 * 1 2 3 23 23 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 24 24 H 0.96999 * 120.00041 * 180.02562 * 7 6 4 25 25 H 1.00891 * 111.00483 * 151.04740 * 12 2 1 26 26 H 1.08998 * 110.46775 * 98.42770 * 15 13 12 27 27 H 1.08993 * 110.60550 * 335.83923 * 15 13 12 28 28 H 1.09008 * 109.46474 * 270.02434 * 19 18 16 29 29 H 1.08995 * 109.46834 * 30.01620 * 19 18 16 30 30 H 1.08996 * 109.46956 * 150.02297 * 19 18 16 31 31 H 1.09002 * 110.24740 * 101.98470 * 20 18 16 32 32 H 1.09002 * 110.24616 * 223.89995 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3224 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8279 -0.4194 -5.2205 11 1 3.8074 -1.1192 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 1 1.3069 0.9855 2.2784 15 6 3.4854 0.8668 2.4681 16 6 3.7294 0.9472 3.9589 17 8 4.5778 1.6339 4.4879 18 7 2.8691 0.1472 4.6120 19 6 2.8261 -0.0065 6.0684 20 6 1.9788 -0.5530 3.6789 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 0.7090 1.1613 -3.4845 25 1 2.9172 -1.1205 1.0288 26 1 3.4866 1.8635 2.0271 27 1 4.2382 0.2389 1.9917 28 1 3.4888 -0.8185 6.3678 29 1 3.1507 0.9204 6.5413 30 1 1.8069 -0.2357 6.3796 31 1 2.3095 -1.5826 3.5426 32 1 0.9535 -0.5325 4.0484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:42 Heat of formation + Delta-G solvation = -53.656801 kcal Electronic energy + Delta-G solvation = -14264.170366 eV Core-core repulsion = 11837.697612 eV Total energy + Delta-G solvation = -2426.472754 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.42351 -38.28038 -36.74237 -34.65036 -32.49744 -29.59027 -28.31593 -27.31090 -26.58263 -22.69258 -21.55866 -20.53866 -18.62904 -17.69316 -17.42489 -16.70097 -16.42294 -15.60912 -15.14538 -14.88766 -14.61931 -14.36934 -14.06498 -13.43395 -13.27019 -13.16372 -12.85141 -12.77271 -12.68372 -12.17949 -12.14782 -12.12137 -11.83819 -11.05504 -10.87344 -10.52509 -9.72778 -9.07978 -8.10478 -6.23774 1.46159 1.46431 1.47047 1.54406 2.06059 2.44239 3.18243 3.25247 3.55787 3.74104 4.05339 4.19195 4.43878 4.50838 4.67056 4.70090 4.84302 4.86083 4.94676 4.98782 5.14633 5.26921 5.53654 5.54616 5.70544 5.90096 6.02182 6.26973 6.45600 6.75499 7.01092 7.07623 7.46659 8.94748 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054852 B = 0.006780 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.339883 B = 4128.956382 C = 4294.379470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.216 3.784 3 H -0.023 1.023 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.666 5.666 13 C 0.083 3.917 14 H 0.085 0.915 15 C -0.180 4.180 16 C 0.516 3.484 17 O -0.584 6.584 18 N -0.617 5.617 19 C 0.090 3.910 20 C 0.119 3.881 21 H 0.026 0.974 22 H 0.054 0.946 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.340 0.660 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.372 -3.717 11.677 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 H -0.006 1.006 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.784 3.216 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.296 5.296 13 C -0.030 4.030 14 H 0.103 0.897 15 C -0.222 4.222 16 C 0.304 3.696 17 O -0.466 6.466 18 N -0.350 5.350 19 C -0.050 4.050 20 C -0.003 4.003 21 H 0.045 0.955 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.159 0.841 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.067 -3.542 12.069 12.578 hybrid contribution 1.038 0.457 -1.284 1.714 sum 1.106 -3.085 10.785 11.271 Atomic orbital electron populations 1.21578 0.97575 0.99142 0.99189 1.18920 0.92760 0.91101 0.86413 1.00584 1.21575 1.31654 1.12772 0.91542 0.91963 1.25675 0.95225 0.95630 1.01944 1.70009 1.37478 1.24006 1.24154 0.85607 0.78653 0.78739 0.78581 1.19586 1.21331 1.19786 1.60586 1.32579 1.31619 1.04854 1.22520 0.94202 0.94122 0.92106 0.89663 1.23148 1.01059 1.04598 0.93384 1.21040 0.79976 0.78189 0.90393 1.90650 1.36784 1.44270 1.74858 1.48371 1.34986 1.43580 1.08096 1.21759 1.04252 1.02282 0.76754 1.22206 0.94932 0.96349 0.86844 0.95495 0.92753 0.95000 0.92935 0.84109 0.89346 0.87455 0.91558 0.91841 0.87989 0.89314 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 9.18 71.98 0.66 -4.73 16 2 C 0.22 10.14 2.47 44.17 0.11 10.25 16 3 H -0.02 -1.22 7.86 -2.39 -0.02 -1.24 16 4 C -0.54 -27.81 8.59 25.60 0.22 -27.59 16 5 H 0.06 3.12 7.62 -2.91 -0.02 3.10 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -51.26 11.32 21.45 0.24 -51.02 16 8 Si 0.96 42.11 29.54 68.60 2.03 44.13 16 9 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.67 -24.47 6.16 -467.49 -2.88 -27.35 16 13 C 0.08 2.53 3.24 46.05 0.15 2.68 16 14 H 0.09 2.78 7.25 -2.39 -0.02 2.76 16 15 C -0.18 -5.65 6.55 30.67 0.20 -5.45 16 16 C 0.52 16.68 8.02 87.90 0.71 17.38 16 17 O -0.58 -23.10 17.60 -3.04 -0.05 -23.16 16 18 N -0.62 -15.54 3.33 -842.88 -2.81 -18.35 16 19 C 0.09 1.67 10.96 127.77 1.40 3.07 16 20 C 0.12 2.79 7.08 86.83 0.61 3.40 16 21 H 0.03 1.08 7.53 -2.39 -0.02 1.06 16 22 H 0.05 2.82 6.07 -2.39 -0.01 2.81 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.34 12.18 7.59 -89.70 -0.68 11.50 16 26 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.11 3.29 7.58 -2.39 -0.02 3.27 16 28 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.06 1.30 7.93 -2.39 -0.02 1.29 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.96 8.07 -2.39 -0.02 1.94 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -62.31 267.18 1.46 -60.85 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.43 Total: 14.65 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 4.51 Total: 0.25 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -5.45 Total: -96.72 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -62.31 1.46 -60.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.190 kcal (2) G-P(sol) polarization free energy of solvation -62.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds