Wall clock time and date at job start Mon Mar 30 2020 02:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47322 * 2 1 4 4 C 1.50702 * 109.47065 * 119.99641 * 2 1 3 5 5 H 1.08000 * 120.00314 * 119.99918 * 4 2 1 6 6 C 1.37874 * 119.99833 * 299.99939 * 4 2 1 7 7 N 1.31521 * 120.00178 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99911 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47288 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47098 * 120.00287 * 8 6 4 11 11 H 1.48500 * 109.47129 * 240.00150 * 8 6 4 12 12 N 1.46904 * 109.47472 * 239.99495 * 2 1 3 13 13 C 1.46900 * 110.99851 * 85.00052 * 12 2 1 14 14 H 1.09005 * 110.88532 * 37.35693 * 13 12 2 15 15 C 1.54627 * 110.96810 * 273.54866 * 13 12 2 16 16 C 1.51285 * 104.19738 * 217.08185 * 15 13 12 17 17 O 1.21280 * 124.94314 * 196.21659 * 16 15 13 18 18 N 1.34424 * 110.10841 * 16.25598 * 16 15 13 19 19 C 1.46509 * 124.34231 * 180.40836 * 18 16 15 20 20 C 1.46755 * 111.30504 * 0.40398 * 18 16 15 21 21 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47434 * 300.00727 * 1 2 3 23 23 H 1.09001 * 109.47166 * 60.00239 * 1 2 3 24 24 H 0.97001 * 119.99519 * 179.97438 * 7 6 4 25 25 H 1.00894 * 110.99745 * 208.95414 * 12 2 1 26 26 H 1.09001 * 110.48777 * 335.76435 * 15 13 12 27 27 H 1.09000 * 110.48903 * 98.40888 * 15 13 12 28 28 H 1.08996 * 109.46607 * 269.99417 * 19 18 16 29 29 H 1.08998 * 109.47149 * 29.99547 * 19 18 16 30 30 H 1.09006 * 109.46595 * 149.99761 * 19 18 16 31 31 H 1.08999 * 110.24678 * 223.99027 * 20 18 16 32 32 H 1.08996 * 110.32158 * 102.02542 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 0.9426 0.8299 2.6033 8 14 2.3212 -1.1201 4.0080 9 1 3.1463 -2.2868 3.6040 10 1 3.1465 -0.1870 4.8166 11 1 1.1659 -1.5863 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3469 14 1 2.4037 1.2161 -2.0344 15 6 0.7223 0.2855 -3.0794 16 6 1.0932 0.3928 -4.5422 17 8 0.3397 0.7420 -5.4260 18 7 2.3792 0.0441 -4.7196 19 6 3.0644 0.0441 -6.0146 20 6 3.0085 -0.3367 -3.4497 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7080 1.1611 3.4843 25 1 2.9173 -1.1205 -1.0286 26 1 0.1483 -0.6231 -2.8971 27 1 0.1591 1.1635 -2.7634 28 1 2.9490 -0.9315 -6.4867 29 1 2.6303 0.8116 -6.6554 30 1 4.1239 0.2523 -5.8649 31 1 4.0000 0.1093 -3.3715 32 1 3.0763 -1.4217 -3.3711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:46 Heat of formation + Delta-G solvation = -31.517634 kcal Electronic energy + Delta-G solvation = -14296.616299 eV Core-core repulsion = 11871.103571 eV Total energy + Delta-G solvation = -2425.512727 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.12995 -36.78853 -35.22308 -32.90909 -30.87672 -28.46184 -26.85537 -25.76513 -24.94322 -21.00155 -19.92169 -19.38488 -16.70587 -16.37879 -16.10855 -15.17791 -14.84998 -14.19964 -13.74272 -13.44715 -13.34262 -13.08656 -12.39339 -12.24593 -12.10274 -11.48056 -11.29959 -11.03356 -10.93913 -10.70167 -10.28166 -10.15082 -9.98701 -9.58504 -8.87375 -8.62376 -8.53078 -7.51629 -6.08684 -4.15914 2.81068 3.14930 3.25022 3.33483 3.36696 4.33971 4.61189 4.75880 4.95956 5.23093 5.25496 5.33892 5.41744 5.60341 5.64880 5.79383 5.91317 6.19140 6.35575 6.61690 6.82892 7.09400 7.15122 7.21010 7.41108 7.71019 7.80680 8.18305 8.25724 8.35802 8.53291 8.93370 9.50613 10.97446 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.064146 B = 0.006729 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.401290 B = 4159.915209 C = 4468.489852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.211 3.789 3 H 0.004 0.996 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.675 5.675 13 C 0.077 3.923 14 H 0.059 0.941 15 C -0.142 4.142 16 C 0.519 3.481 17 O -0.545 6.545 18 N -0.625 5.625 19 C 0.097 3.903 20 C 0.102 3.898 21 H 0.032 0.968 22 H 0.080 0.920 23 H 0.010 0.990 24 H 0.261 0.739 25 H 0.336 0.664 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -1.488 -9.940 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.104 3.896 3 H 0.022 0.978 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.308 5.308 13 C -0.034 4.034 14 H 0.077 0.923 15 C -0.182 4.182 16 C 0.308 3.692 17 O -0.423 6.423 18 N -0.361 5.361 19 C -0.045 4.045 20 C -0.021 4.021 21 H 0.051 0.949 22 H 0.099 0.901 23 H 0.029 0.971 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.133 0.867 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.049 -1.436 -10.495 11.341 hybrid contribution 1.150 0.074 1.149 1.628 sum 5.199 -1.362 -9.346 10.782 Atomic orbital electron populations 1.21807 0.97650 0.99506 0.99797 1.19200 0.92868 0.92326 0.85195 0.97802 1.21277 1.31656 1.12629 0.90386 0.92075 1.24920 0.94983 0.94968 0.99107 1.69908 1.36446 1.22854 1.23483 0.86461 0.78620 0.79581 0.82835 1.19751 1.21106 1.20950 1.60838 1.32094 1.32077 1.05779 1.22400 0.93038 0.96252 0.91714 0.92337 1.22535 0.99556 1.05666 0.90464 1.21249 0.81262 0.75008 0.91709 1.90669 1.54212 1.48445 1.48950 1.48203 1.12384 1.67255 1.08221 1.21492 0.96977 1.01947 0.84119 1.22316 0.96644 1.00867 0.82262 0.94921 0.90124 0.97066 0.92895 0.84507 0.86721 0.88471 0.92870 0.90977 0.91274 0.90834 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.00 37.15 0.33 -2.73 16 2 C 0.21 5.00 2.60 -68.86 -0.18 4.82 16 3 H 0.00 0.11 7.50 -51.93 -0.39 -0.28 16 4 C -0.52 -13.56 8.59 -34.44 -0.30 -13.86 16 5 H 0.06 1.56 7.62 -52.49 -0.40 1.16 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.68 -12.90 6.13 -99.25 -0.61 -13.51 16 13 C 0.08 1.26 3.42 -66.08 -0.23 1.03 16 14 H 0.06 1.00 7.56 -51.93 -0.39 0.61 16 15 C -0.14 -2.35 4.97 -26.74 -0.13 -2.48 16 16 C 0.52 8.78 8.02 -10.86 -0.09 8.69 16 17 O -0.55 -10.88 17.60 5.56 0.10 -10.78 16 18 N -0.63 -8.71 3.33 -180.29 -0.60 -9.31 16 19 C 0.10 1.04 10.96 59.85 0.66 1.69 16 20 C 0.10 1.33 6.85 -3.13 -0.02 1.30 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 23 H 0.01 0.22 5.92 -51.93 -0.31 -0.08 16 24 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 25 H 0.34 6.08 8.01 -39.30 -0.31 5.77 16 26 H 0.11 1.97 8.08 -51.93 -0.42 1.55 16 27 H 0.10 1.64 7.43 -51.93 -0.39 1.26 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.81 7.93 -51.93 -0.41 0.40 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 LS Contribution 264.03 15.07 3.98 3.98 Total: -1.00 -29.60 264.03 -6.15 -35.75 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.58 Total: 2.30 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.05 Total: 0.04 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: -0.58 Total: -46.85 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.10 Total: -10.78 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.60 -6.15 -35.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.237 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds