Wall clock time and date at job start Mon Mar 30 2020 02:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47322 * 2 1 4 4 C 1.50702 * 109.47065 * 119.99641 * 2 1 3 5 5 H 1.08000 * 120.00314 * 119.99918 * 4 2 1 6 6 C 1.37874 * 119.99833 * 299.99939 * 4 2 1 7 7 N 1.31521 * 120.00178 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99911 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47288 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47098 * 120.00287 * 8 6 4 11 11 H 1.48500 * 109.47129 * 240.00150 * 8 6 4 12 12 N 1.46904 * 109.47472 * 239.99495 * 2 1 3 13 13 C 1.46900 * 110.99851 * 85.00052 * 12 2 1 14 14 H 1.09005 * 110.88532 * 37.35693 * 13 12 2 15 15 C 1.54627 * 110.96810 * 273.54866 * 13 12 2 16 16 C 1.51285 * 104.19738 * 217.08185 * 15 13 12 17 17 O 1.21280 * 124.94314 * 196.21659 * 16 15 13 18 18 N 1.34424 * 110.10841 * 16.25598 * 16 15 13 19 19 C 1.46509 * 124.34231 * 180.40836 * 18 16 15 20 20 C 1.46755 * 111.30504 * 0.40398 * 18 16 15 21 21 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47434 * 300.00727 * 1 2 3 23 23 H 1.09001 * 109.47166 * 60.00239 * 1 2 3 24 24 H 0.97001 * 119.99519 * 179.97438 * 7 6 4 25 25 H 1.00894 * 110.99745 * 208.95414 * 12 2 1 26 26 H 1.09001 * 110.48777 * 335.76435 * 15 13 12 27 27 H 1.09000 * 110.48903 * 98.40888 * 15 13 12 28 28 H 1.08996 * 109.46607 * 269.99417 * 19 18 16 29 29 H 1.08998 * 109.47149 * 29.99547 * 19 18 16 30 30 H 1.09006 * 109.46595 * 149.99761 * 19 18 16 31 31 H 1.08999 * 110.24678 * 223.99027 * 20 18 16 32 32 H 1.08996 * 110.32158 * 102.02542 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 0.9426 0.8299 2.6033 8 14 2.3212 -1.1201 4.0080 9 1 3.1463 -2.2868 3.6040 10 1 3.1465 -0.1870 4.8166 11 1 1.1659 -1.5863 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3469 14 1 2.4037 1.2161 -2.0344 15 6 0.7223 0.2855 -3.0794 16 6 1.0932 0.3928 -4.5422 17 8 0.3397 0.7420 -5.4260 18 7 2.3792 0.0441 -4.7196 19 6 3.0644 0.0441 -6.0146 20 6 3.0085 -0.3367 -3.4497 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7080 1.1611 3.4843 25 1 2.9173 -1.1205 -1.0286 26 1 0.1483 -0.6231 -2.8971 27 1 0.1591 1.1635 -2.7634 28 1 2.9490 -0.9315 -6.4867 29 1 2.6303 0.8116 -6.6554 30 1 4.1239 0.2523 -5.8649 31 1 4.0000 0.1093 -3.3715 32 1 3.0763 -1.4217 -3.3711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:46 Heat of formation + Delta-G solvation = -52.583230 kcal Electronic energy + Delta-G solvation = -14297.529772 eV Core-core repulsion = 11871.103571 eV Total energy + Delta-G solvation = -2426.426200 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40505 -38.28667 -36.74272 -34.60849 -32.41115 -30.07671 -28.05169 -27.35333 -26.57622 -22.49639 -21.61796 -20.64150 -18.49582 -17.71975 -17.39826 -16.73936 -16.41599 -15.69204 -15.25348 -15.04479 -14.63918 -14.42666 -13.84627 -13.38399 -13.23947 -13.15956 -12.91525 -12.79543 -12.60057 -12.42140 -12.08740 -11.96192 -11.66442 -11.04500 -10.74403 -10.54091 -9.74041 -9.15104 -8.10320 -6.24087 1.44382 1.47328 1.48900 1.57845 2.05806 2.44264 3.18352 3.29221 3.51897 3.66590 4.08641 4.35552 4.43203 4.52582 4.60296 4.73101 4.84346 4.86049 4.90839 5.02017 5.17547 5.27204 5.50838 5.55258 5.70988 5.89759 6.00970 6.26615 6.46133 6.77737 7.02282 7.09980 7.46715 8.95276 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.064146 B = 0.006729 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.401290 B = 4159.915209 C = 4468.489852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.217 3.783 3 H -0.024 1.024 4 C -0.534 4.534 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.961 3.039 9 H -0.263 1.263 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.670 5.670 13 C 0.076 3.924 14 H 0.051 0.949 15 C -0.140 4.140 16 C 0.515 3.485 17 O -0.582 6.582 18 N -0.618 5.618 19 C 0.090 3.910 20 C 0.112 3.888 21 H 0.027 0.973 22 H 0.052 0.948 23 H 0.028 0.972 24 H 0.261 0.739 25 H 0.345 0.655 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.826 -2.558 -10.477 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.108 3.892 3 H -0.006 1.006 4 C -0.572 4.572 5 H 0.083 0.917 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.302 5.302 13 C -0.035 4.035 14 H 0.069 0.931 15 C -0.181 4.181 16 C 0.304 3.696 17 O -0.463 6.463 18 N -0.351 5.351 19 C -0.050 4.050 20 C -0.010 4.010 21 H 0.046 0.954 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.164 0.836 26 H 0.127 0.873 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.829 -2.530 -11.048 12.745 hybrid contribution 0.634 0.412 1.266 1.475 sum 6.463 -2.118 -9.782 11.914 Atomic orbital electron populations 1.21650 0.97938 0.98913 0.99299 1.18961 0.92655 0.90965 0.86575 1.00640 1.21648 1.31465 1.12711 0.91405 0.91670 1.25718 0.95245 0.95655 1.02096 1.70042 1.37594 1.24225 1.24020 0.85462 0.77976 0.78669 0.79212 1.18717 1.20902 1.21105 1.60652 1.32710 1.32089 1.04766 1.22368 0.93858 0.95623 0.91652 0.93112 1.22447 0.99738 1.04924 0.90967 1.21184 0.82174 0.75095 0.91149 1.90647 1.55466 1.50499 1.49730 1.48301 1.11386 1.65646 1.09766 1.21763 0.98391 1.02524 0.82351 1.22321 0.96758 1.01729 0.80237 0.95366 0.92911 0.95283 0.92987 0.83559 0.87341 0.89470 0.91568 0.91807 0.87959 0.87740 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 9.00 71.98 0.65 -5.07 16 2 C 0.22 10.27 2.60 44.17 0.11 10.39 16 3 H -0.02 -1.26 7.50 -2.39 -0.02 -1.27 16 4 C -0.53 -27.56 8.59 25.60 0.22 -27.34 16 5 H 0.07 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.64 5.30 84.65 0.45 1.08 16 7 N -0.92 -51.68 11.32 21.45 0.24 -51.43 16 8 Si 0.96 41.90 29.54 68.60 2.03 43.92 16 9 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 12 N -0.67 -24.73 6.13 -467.91 -2.87 -27.59 16 13 C 0.08 2.36 3.42 45.97 0.16 2.52 16 14 H 0.05 1.69 7.56 -2.38 -0.02 1.67 16 15 C -0.14 -4.58 4.97 30.59 0.15 -4.43 16 16 C 0.52 16.92 8.02 87.90 0.71 17.63 16 17 O -0.58 -23.15 17.60 -3.03 -0.05 -23.20 16 18 N -0.62 -15.57 3.33 -842.90 -2.81 -18.38 16 19 C 0.09 1.65 10.96 127.77 1.40 3.05 16 20 C 0.11 2.53 6.85 86.83 0.59 3.13 16 21 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.05 2.82 6.07 -2.39 -0.01 2.81 16 23 H 0.03 1.23 5.92 -2.39 -0.01 1.22 16 24 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 25 H 0.34 11.76 8.01 -89.70 -0.72 11.04 16 26 H 0.11 3.69 8.08 -2.39 -0.02 3.67 16 27 H 0.09 2.99 7.43 -2.39 -0.02 2.97 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.30 7.93 -2.39 -0.02 1.28 16 30 H 0.10 1.21 8.14 -2.38 -0.02 1.20 16 31 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 1.94 8.07 -2.39 -0.02 1.92 16 Total: -1.00 -63.44 264.03 1.37 -62.07 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.39 Total: 13.66 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.44 Total: 0.95 kcal Atomic # 7 Polarization: -91.97 SS G_CDS: -5.43 Total: -97.40 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.05 Total: -23.20 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -63.44 1.37 -62.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.487 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds