Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47398 * 2 1 4 4 C 1.50702 * 109.46954 * 240.00127 * 2 1 3 5 5 H 1.07996 * 120.00380 * 240.00257 * 4 2 1 6 6 C 1.37882 * 120.00001 * 59.99919 * 4 2 1 7 7 N 1.31519 * 119.99958 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47422 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47239 * 119.99867 * 8 6 4 11 11 H 1.48501 * 109.47347 * 240.00136 * 8 6 4 12 12 N 1.46898 * 109.47200 * 120.00741 * 2 1 3 13 13 C 1.46906 * 110.99564 * 274.99322 * 12 2 1 14 14 H 1.09002 * 110.85730 * 325.70209 * 13 12 2 15 15 C 1.54637 * 110.96772 * 89.49375 * 13 12 2 16 16 C 1.51339 * 104.16489 * 93.38375 * 15 13 12 17 17 O 1.21285 * 124.92565 * 196.24857 * 16 15 13 18 18 N 1.34412 * 110.13391 * 16.20052 * 16 15 13 19 19 C 1.46500 * 124.35131 * 180.45871 * 18 16 15 20 20 C 1.46765 * 111.30144 * 0.44000 * 18 16 15 21 21 H 1.08995 * 109.46983 * 59.99231 * 1 2 3 22 22 H 1.08993 * 109.47398 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46557 * 299.99876 * 1 2 3 24 24 H 0.96995 * 120.00096 * 179.97438 * 7 6 4 25 25 H 1.00895 * 111.00703 * 38.94549 * 12 2 1 26 26 H 1.09001 * 110.48391 * 212.03574 * 15 13 12 27 27 H 1.08997 * 110.48457 * 334.67727 * 15 13 12 28 28 H 1.09001 * 109.47402 * 269.98086 * 19 18 16 29 29 H 1.09004 * 109.47207 * 29.97772 * 19 18 16 30 30 H 1.09002 * 109.46987 * 149.97732 * 19 18 16 31 31 H 1.09000 * 110.24541 * 223.98555 * 20 18 16 32 32 H 1.08995 * 110.32113 * 102.02111 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3211 -1.1202 -4.0080 9 1 3.1463 -2.2870 -3.6040 10 1 1.1658 -1.5865 -4.8161 11 1 3.1464 -0.1873 -4.8166 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2225 2.3468 14 1 2.3517 1.2289 2.0263 15 6 0.7458 0.2280 3.1241 16 6 0.9451 -0.8061 4.2110 17 8 0.0543 -1.3095 4.8622 18 7 2.2524 -1.0862 4.3490 19 6 2.7939 -2.0533 5.3070 20 6 3.0677 -0.2990 3.4165 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3632 0.5139 0.8901 24 1 0.7094 1.1619 -3.4844 25 1 1.4496 -1.4980 1.4100 26 1 0.5625 1.2098 3.5607 27 1 -0.0772 -0.0591 2.4696 28 1 3.0138 -1.5487 6.2478 29 1 2.0618 -2.8420 5.4802 30 1 3.7091 -2.4887 4.9056 31 1 3.8270 -0.9298 2.9543 32 1 3.5371 0.5362 3.9361 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306233054.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = -51.044662 kcal Electronic energy + Delta-G solvation = -14434.827130 eV Core-core repulsion = 12008.467647 eV Total energy + Delta-G solvation = -2426.359483 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.45620 -38.28802 -36.72026 -34.58457 -32.41034 -29.63129 -28.12784 -27.26016 -26.76164 -22.43938 -22.05768 -20.53092 -18.44259 -17.60834 -17.42810 -16.62978 -16.47449 -15.62565 -15.16815 -14.94012 -14.52415 -14.22121 -13.85091 -13.42523 -13.34500 -13.18061 -12.84363 -12.80827 -12.71908 -12.36317 -12.17286 -12.08015 -11.80281 -10.94988 -10.86838 -10.45360 -9.68714 -9.04668 -8.07476 -6.17676 1.43428 1.46340 1.51439 1.57317 2.13905 2.46023 3.21603 3.40316 3.44260 3.77950 4.01820 4.35560 4.46494 4.52289 4.66447 4.70027 4.80935 4.85454 4.86739 4.99946 5.04147 5.15730 5.45433 5.59223 5.72951 5.85550 6.08481 6.29507 6.62482 6.75399 6.96212 7.13129 7.52117 8.97798 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052545 B = 0.007301 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.749219 B = 3834.115149 C = 4061.537739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.218 3.782 3 H 0.018 0.982 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.281 1.281 12 N -0.672 5.672 13 C 0.077 3.923 14 H 0.107 0.893 15 C -0.189 4.189 16 C 0.511 3.489 17 O -0.588 6.588 18 N -0.617 5.617 19 C 0.091 3.909 20 C 0.115 3.885 21 H 0.060 0.940 22 H 0.022 0.978 23 H 0.037 0.963 24 H 0.260 0.740 25 H 0.328 0.672 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 -0.795 11.206 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.110 3.890 3 H 0.035 0.965 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.207 1.207 12 N -0.300 5.300 13 C -0.035 4.035 14 H 0.125 0.875 15 C -0.230 4.230 16 C 0.300 3.700 17 O -0.470 6.470 18 N -0.349 5.349 19 C -0.050 4.050 20 C -0.008 4.008 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.110 0.890 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.459 -0.933 11.285 12.570 hybrid contribution -1.021 -0.269 -0.811 1.331 sum 4.438 -1.202 10.474 11.439 Atomic orbital electron populations 1.22422 1.00351 0.98883 1.00609 1.19004 0.89763 0.93178 0.87055 0.96452 1.21514 1.30258 1.12432 0.91161 0.92744 1.25655 0.95528 0.95874 1.01744 1.69999 1.38064 1.24212 1.23866 0.85533 0.77960 0.78675 0.79572 1.19402 1.21069 1.20686 1.60689 1.57368 1.08800 1.03123 1.22700 0.92327 0.98161 0.90314 0.87459 1.23328 1.01653 1.00428 0.97622 1.21206 0.82668 0.82558 0.83609 1.90647 1.46760 1.57613 1.52001 1.48338 1.06941 1.41462 1.38194 1.21708 0.99952 0.91356 0.91949 1.22404 0.93575 0.96280 0.88519 0.92074 0.95857 0.94407 0.93071 0.85528 0.85937 0.88989 0.91188 0.92339 0.88569 0.88747 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.53 8.41 71.98 0.61 -6.92 16 2 C 0.22 10.26 2.57 44.17 0.11 10.38 16 3 H 0.02 0.89 7.47 -2.39 -0.02 0.87 16 4 C -0.51 -27.50 8.84 25.60 0.23 -27.27 16 5 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.55 5.30 84.66 0.45 1.00 16 7 N -0.92 -51.63 11.32 21.45 0.24 -51.39 16 8 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 N -0.67 -25.60 6.08 -467.88 -2.85 -28.45 16 13 C 0.08 2.26 3.43 45.97 0.16 2.41 16 14 H 0.11 3.08 7.50 -2.39 -0.02 3.06 16 15 C -0.19 -5.56 5.90 30.61 0.18 -5.38 16 16 C 0.51 16.53 8.02 87.92 0.71 17.24 16 17 O -0.59 -23.59 17.59 -3.04 -0.05 -23.64 16 18 N -0.62 -15.88 3.33 -842.82 -2.81 -18.68 16 19 C 0.09 1.83 10.96 127.77 1.40 3.23 16 20 C 0.11 2.62 7.08 86.83 0.61 3.23 16 21 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 22 H 0.02 1.05 8.13 -2.39 -0.02 1.03 16 23 H 0.04 1.51 5.68 -2.38 -0.01 1.50 16 24 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.33 12.76 8.22 -89.70 -0.74 12.02 16 26 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.09 3.09 5.43 -2.39 -0.01 3.08 16 28 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.34 7.93 -2.39 -0.02 1.32 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 2.16 8.09 -2.39 -0.02 2.14 16 32 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -63.81 262.91 1.39 -62.42 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.38 Total: 16.70 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.45 Total: -2.09 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -5.41 Total: -98.52 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -63.81 1.39 -62.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233054.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.377 kcal (2) G-P(sol) polarization free energy of solvation -63.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds