Wall clock time and date at job start Mon Mar 30 2020 02:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47234 * 2 1 4 4 C 1.50705 * 109.46772 * 119.99642 * 2 1 3 5 5 H 1.07997 * 119.99961 * 120.00208 * 4 2 1 6 6 C 1.37874 * 119.99893 * 299.99620 * 4 2 1 7 7 N 1.31510 * 119.99983 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 120.00178 * 0.02562 * 6 4 2 9 9 H 1.48505 * 109.46951 * 89.99775 * 8 6 4 10 10 H 1.48503 * 109.47237 * 209.99629 * 8 6 4 11 11 H 1.48500 * 109.46878 * 329.99789 * 8 6 4 12 12 N 1.46891 * 109.47123 * 239.99376 * 2 1 3 13 13 C 1.46902 * 111.00068 * 85.00474 * 12 2 1 14 14 H 1.09003 * 110.85185 * 328.78358 * 13 12 2 15 15 C 1.54618 * 111.00512 * 92.60102 * 13 12 2 16 16 C 1.51284 * 104.19819 * 142.93139 * 15 13 12 17 17 O 1.21284 * 124.94089 * 163.77039 * 16 15 13 18 18 N 1.34413 * 110.11346 * 343.74895 * 16 15 13 19 19 C 1.46500 * 124.34722 * 179.85759 * 18 16 15 20 20 C 1.46766 * 111.30232 * 359.58991 * 18 16 15 21 21 H 1.08997 * 109.47299 * 300.00542 * 1 2 3 22 22 H 1.08999 * 109.47089 * 60.00633 * 1 2 3 23 23 H 1.09004 * 109.47456 * 180.02562 * 1 2 3 24 24 H 0.97007 * 119.99971 * 180.02562 * 7 6 4 25 25 H 1.00907 * 111.00475 * 321.04591 * 12 2 1 26 26 H 1.09008 * 110.48943 * 261.60984 * 15 13 12 27 27 H 1.08998 * 110.49021 * 24.25091 * 15 13 12 28 28 H 1.08999 * 109.47196 * 269.69702 * 19 18 16 29 29 H 1.08997 * 109.47154 * 29.69859 * 19 18 16 30 30 H 1.09002 * 109.47147 * 149.69648 * 19 18 16 31 31 H 1.09008 * 110.24439 * 136.01733 * 20 18 16 32 32 H 1.08998 * 110.24767 * 257.92806 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4827 7 7 2.1379 -0.8588 3.5566 8 14 0.6248 1.2793 2.6540 9 1 -0.8029 0.8730 2.6996 10 1 0.9758 1.9955 3.9067 11 1 0.8472 2.1766 1.4919 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3468 14 1 1.3066 0.9849 -2.2781 15 6 3.4829 0.8670 -2.4656 16 6 3.7288 0.9483 -3.9561 17 8 4.5777 1.6354 -4.4836 18 7 2.8699 0.1480 -4.6106 19 6 2.8322 -0.0090 -6.0667 20 6 1.9789 -0.5533 -3.6787 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.9032 -0.5274 4.4376 25 1 1.4495 -1.4981 -1.4099 26 1 3.4828 1.8637 -2.0240 27 1 4.2343 0.2377 -1.9887 28 1 2.1470 0.7235 -6.4934 29 1 3.8308 0.1466 -6.4748 30 1 2.4907 -1.0139 -6.3151 31 1 0.9538 -0.5321 -4.0489 32 1 2.3094 -1.5832 -3.5437 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306233055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:52 Heat of formation + Delta-G solvation = -22.023507 kcal Electronic energy + Delta-G solvation = -14324.408561 eV Core-core repulsion = 11899.307530 eV Total energy + Delta-G solvation = -2425.101031 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.21980 -37.00692 -35.44339 -32.88613 -31.39189 -28.72126 -27.17368 -25.71198 -25.05863 -21.20609 -20.35386 -19.30023 -16.86813 -16.62452 -16.23462 -15.30513 -14.95420 -14.39720 -13.85163 -13.52616 -13.33658 -13.05207 -12.61352 -12.47884 -12.37533 -12.23201 -11.93813 -11.27517 -11.12578 -10.84880 -10.48553 -10.17745 -9.71473 -9.54711 -9.20843 -8.70301 -8.62143 -7.66422 -6.08990 -4.07242 2.74399 3.06539 3.21735 3.31784 3.35589 4.35940 4.46420 4.61776 4.78871 5.15104 5.21089 5.23122 5.31433 5.48550 5.56520 5.63399 5.79075 6.02597 6.10380 6.20023 6.28133 6.40834 6.53433 6.67345 7.01076 7.13336 7.61990 7.77506 8.13119 8.29364 8.61220 9.01962 9.52893 11.04377 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.052530 B = 0.007323 C = 0.007156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.897042 B = 3822.901559 C = 3911.903295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.182 3.818 3 H 0.037 0.963 4 C -0.500 4.500 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.658 5.658 13 C 0.074 3.926 14 H 0.061 0.939 15 C -0.144 4.144 16 C 0.520 3.480 17 O -0.543 6.543 18 N -0.626 5.626 19 C 0.096 3.904 20 C 0.101 3.899 21 H 0.046 0.954 22 H 0.026 0.974 23 H 0.055 0.945 24 H 0.264 0.736 25 H 0.336 0.664 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 0.920 -14.430 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.074 3.926 3 H 0.054 0.946 4 C -0.539 4.539 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.537 5.537 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.195 1.195 12 N -0.289 5.289 13 C -0.038 4.038 14 H 0.079 0.921 15 C -0.185 4.185 16 C 0.309 3.691 17 O -0.420 6.420 18 N -0.361 5.361 19 C -0.046 4.046 20 C -0.022 4.022 21 H 0.065 0.935 22 H 0.045 0.955 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.155 0.845 26 H 0.115 0.885 27 H 0.138 0.862 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.400 1.344 -14.427 14.687 hybrid contribution -1.766 0.840 0.043 1.956 sum -4.167 2.185 -14.384 15.134 Atomic orbital electron populations 1.22880 1.01352 1.01040 0.99018 1.19716 0.88638 0.95239 0.89055 0.94557 1.20931 1.31455 1.13880 0.87612 0.89914 1.24934 0.95947 0.96559 0.95889 1.69876 1.45684 1.40296 0.97884 0.86913 0.80535 0.83948 0.77027 1.20795 1.22357 1.19463 1.60720 1.58050 1.08223 1.01900 1.22389 0.95975 0.95370 0.90053 0.92101 1.22479 0.99809 1.04027 0.92196 1.21184 0.79713 0.77906 0.90318 1.90680 1.34894 1.42150 1.74301 1.48191 1.36328 1.45072 1.06523 1.21493 1.02754 1.01378 0.78935 1.22342 0.93892 0.96962 0.89034 0.93520 0.95485 0.92542 0.92612 0.84498 0.88533 0.86225 0.92891 0.90861 0.91197 0.90804 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 8.63 37.16 0.32 -3.32 16 2 C 0.18 3.96 2.03 -68.87 -0.14 3.82 16 3 H 0.04 0.83 6.92 -51.93 -0.36 0.47 16 4 C -0.50 -13.45 9.42 -34.44 -0.32 -13.77 16 5 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 6 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 7 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 8 Si 0.88 21.28 24.37 -169.99 -4.14 17.14 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 12 N -0.66 -11.74 6.06 -99.25 -0.60 -12.34 16 13 C 0.07 1.09 3.23 -66.08 -0.21 0.88 16 14 H 0.06 0.91 7.25 -51.93 -0.38 0.53 16 15 C -0.14 -2.28 6.59 -26.75 -0.18 -2.45 16 16 C 0.52 8.41 8.02 -10.86 -0.09 8.32 16 17 O -0.54 -10.52 17.59 5.55 0.10 -10.42 16 18 N -0.63 -8.18 3.33 -180.28 -0.60 -8.78 16 19 C 0.10 0.97 10.97 59.85 0.66 1.62 16 20 C 0.10 1.19 6.81 -3.12 -0.02 1.17 16 21 H 0.05 1.00 3.27 -51.93 -0.17 0.83 16 22 H 0.03 0.45 7.53 -51.93 -0.39 0.06 16 23 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 25 H 0.34 5.42 8.13 -39.29 -0.32 5.10 16 26 H 0.10 1.52 8.14 -51.92 -0.42 1.10 16 27 H 0.12 1.99 8.08 -51.93 -0.42 1.57 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.79 7.92 -51.93 -0.41 0.37 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 32 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 LS Contribution 261.14 15.07 3.94 3.94 Total: -1.00 -31.40 261.14 -5.20 -36.61 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.58 Total: 1.96 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.43 Total: -47.30 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.10 Total: -10.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.40 -5.20 -36.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306233055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.582 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds