Wall clock time and date at job start Mon Mar 30 2020 02:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47063 * 2 1 4 4 C 1.50709 * 109.47065 * 239.99804 * 2 1 3 5 5 H 1.07998 * 119.99891 * 240.00025 * 4 2 1 6 6 C 1.37870 * 119.99757 * 60.00298 * 4 2 1 7 7 N 1.31520 * 120.00249 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46952 * 90.00142 * 8 6 4 10 10 H 1.48500 * 109.46980 * 209.99806 * 8 6 4 11 11 H 1.48501 * 109.46811 * 329.99849 * 8 6 4 12 12 N 1.46504 * 109.47110 * 120.00375 * 2 1 3 13 13 N 1.40099 * 119.99504 * 269.99745 * 12 2 1 14 14 C 1.28008 * 119.99748 * 174.63130 * 13 12 2 15 15 C 1.51519 * 121.18804 * 353.64798 * 14 13 12 16 16 C 1.53360 * 108.09123 * 228.39677 * 15 14 13 17 17 O 1.42894 * 109.31138 * 307.80020 * 16 15 14 18 18 C 1.42894 * 114.49794 * 64.90764 * 17 16 15 19 19 C 1.51516 * 121.21379 * 173.68797 * 14 13 12 20 20 H 1.08996 * 109.47063 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46748 * 299.99791 * 1 2 3 22 22 H 1.09003 * 109.46672 * 60.00231 * 1 2 3 23 23 H 0.97005 * 120.00100 * 179.97438 * 7 6 4 24 24 H 0.96999 * 120.00289 * 89.99673 * 12 2 1 25 25 H 1.09003 * 109.71450 * 108.76600 * 15 14 13 26 26 H 1.08999 * 109.77166 * 348.05774 * 15 14 13 27 27 H 1.09001 * 109.50813 * 187.84301 * 16 15 14 28 28 H 1.09001 * 109.50617 * 67.75900 * 16 15 14 29 29 H 1.08992 * 109.50127 * 55.01409 * 18 17 16 30 30 H 1.08997 * 109.50393 * 175.09550 * 18 17 16 31 31 H 1.09001 * 109.73904 * 11.91751 * 19 14 13 32 32 H 1.08997 * 109.73602 * 251.21547 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0184 -0.6907 1.1962 13 7 2.2519 0.0299 2.3747 14 6 2.5794 -0.5868 3.4476 15 6 2.5840 -2.1006 3.5123 16 6 1.8323 -2.5254 4.7798 17 8 2.3780 -1.8361 5.9062 18 6 2.1946 -0.4192 5.8797 19 6 2.9755 0.1704 4.6988 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 0.7088 1.1613 -3.4845 24 1 2.1800 -1.6468 1.1721 25 1 3.6109 -2.4637 3.5543 26 1 2.0841 -2.5087 2.6339 27 1 1.9401 -3.6004 4.9239 28 1 0.7761 -2.2761 4.6774 29 1 1.1349 -0.1916 5.7653 30 1 2.5611 0.0127 6.8110 31 1 2.7282 1.2258 4.5842 32 1 4.0457 0.0593 4.8729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306237140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:56 Heat of formation + Delta-G solvation = -12.636402 kcal Electronic energy + Delta-G solvation = -14115.369775 eV Core-core repulsion = 11690.675799 eV Total energy + Delta-G solvation = -2424.693976 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.08301 -36.47196 -34.25382 -31.95212 -31.15839 -29.77727 -26.75442 -25.19850 -23.65000 -22.74761 -20.36760 -18.65930 -17.14129 -16.07785 -15.93957 -15.10421 -14.75691 -14.50592 -14.12759 -13.72511 -13.13661 -12.54009 -12.30776 -11.98837 -11.48110 -11.34319 -11.23947 -11.02171 -10.78253 -10.54535 -10.44679 -10.20665 -10.14844 -9.60299 -9.22882 -8.93712 -8.50753 -6.85026 -6.13053 -4.20931 2.91360 3.24010 3.30556 3.33515 3.84034 3.97287 4.37648 4.95470 5.07285 5.13103 5.19345 5.35265 5.40904 5.44708 5.66923 5.74273 5.94779 6.03371 6.15814 6.46062 6.76941 6.99201 7.05923 7.17837 7.23987 7.59304 7.80690 7.88262 8.19690 8.35626 8.88049 9.43716 9.46675 10.93060 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059061 B = 0.006341 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.973543 B = 4414.790706 C = 4578.528252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.298 3.702 3 H 0.040 0.960 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.637 5.637 13 N -0.204 5.204 14 C -0.016 4.016 15 C -0.139 4.139 16 C 0.074 3.926 17 O -0.386 6.386 18 C 0.067 3.933 19 C -0.078 4.078 20 H 0.024 0.976 21 H 0.010 0.990 22 H 0.089 0.911 23 H 0.264 0.736 24 H 0.368 0.632 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.500 -3.858 12.323 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.195 3.805 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.375 5.375 13 N -0.014 5.014 14 C -0.210 4.210 15 C -0.179 4.179 16 C -0.004 4.004 17 O -0.305 6.305 18 C -0.011 4.011 19 C -0.117 4.117 20 H 0.043 0.957 21 H 0.029 0.971 22 H 0.108 0.892 23 H 0.074 0.926 24 H 0.205 0.795 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.260 -2.792 11.747 12.139 hybrid contribution 0.265 -1.514 -1.059 1.866 sum 1.525 -4.306 10.688 11.623 Atomic orbital electron populations 1.22221 0.99373 0.99013 1.00388 1.18471 0.89869 0.93544 0.78566 0.94212 1.21233 1.32058 1.13182 0.90269 0.92315 1.24863 0.94878 0.95006 0.98939 1.69896 1.36169 1.22566 1.23849 0.86433 0.79187 0.79276 0.82127 1.20549 1.21002 1.19894 1.48946 1.74675 1.07909 1.05978 1.73459 1.05463 1.28415 0.94055 1.24121 1.09474 0.92690 0.94690 1.21641 1.01955 0.95219 0.99109 1.22494 0.96262 0.96504 0.85145 1.87822 1.80214 1.19168 1.43268 1.22634 0.99215 0.81053 0.98215 1.20927 1.00489 0.99540 0.90777 0.95685 0.97089 0.89221 0.92602 0.79472 0.90413 0.90608 0.88994 0.93216 0.93079 0.88714 0.89798 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.29 37.16 0.35 -3.44 16 2 C 0.30 7.78 3.23 -69.07 -0.22 7.56 16 3 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 4 C -0.53 -14.45 8.74 -34.44 -0.30 -14.75 16 5 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.64 -14.51 5.91 -5.88 -0.03 -14.55 16 13 N -0.20 -4.30 11.44 35.99 0.41 -3.89 16 14 C -0.02 -0.27 6.61 -78.11 -0.52 -0.79 16 15 C -0.14 -2.06 5.96 -27.29 -0.16 -2.22 16 16 C 0.07 0.94 6.85 37.34 0.26 1.20 16 17 O -0.39 -5.17 10.68 -35.23 -0.38 -5.54 16 18 C 0.07 0.78 6.85 37.35 0.26 1.04 16 19 C -0.08 -1.05 6.38 -27.29 -0.17 -1.22 16 20 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.37 7.84 6.35 -182.60 -1.16 6.68 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 26 H 0.08 1.18 5.99 -51.93 -0.31 0.87 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 265.34 15.07 4.00 4.00 Total: -1.00 -29.29 265.34 -6.57 -35.85 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.56 Total: 3.49 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.61 Total: -10.92 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 1.00 Total: -42.82 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.38 Total: -5.54 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.29 -6.57 -35.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306237140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.217 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds