Wall clock time and date at job start Mon Mar 30 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47063 * 2 1 4 4 C 1.50709 * 109.47065 * 239.99804 * 2 1 3 5 5 H 1.07998 * 119.99891 * 240.00025 * 4 2 1 6 6 C 1.37870 * 119.99757 * 60.00298 * 4 2 1 7 7 N 1.31520 * 120.00249 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99990 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46952 * 90.00142 * 8 6 4 10 10 H 1.48500 * 109.46980 * 209.99806 * 8 6 4 11 11 H 1.48501 * 109.46811 * 329.99849 * 8 6 4 12 12 N 1.46504 * 109.47110 * 120.00375 * 2 1 3 13 13 N 1.40099 * 119.99504 * 269.99745 * 12 2 1 14 14 C 1.28008 * 119.99748 * 174.63130 * 13 12 2 15 15 C 1.51519 * 121.18804 * 353.64798 * 14 13 12 16 16 C 1.53360 * 108.09123 * 228.39677 * 15 14 13 17 17 O 1.42894 * 109.31138 * 307.80020 * 16 15 14 18 18 C 1.42894 * 114.49794 * 64.90764 * 17 16 15 19 19 C 1.51516 * 121.21379 * 173.68797 * 14 13 12 20 20 H 1.08996 * 109.47063 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46748 * 299.99791 * 1 2 3 22 22 H 1.09003 * 109.46672 * 60.00231 * 1 2 3 23 23 H 0.97005 * 120.00100 * 179.97438 * 7 6 4 24 24 H 0.96999 * 120.00289 * 89.99673 * 12 2 1 25 25 H 1.09003 * 109.71450 * 108.76600 * 15 14 13 26 26 H 1.08999 * 109.77166 * 348.05774 * 15 14 13 27 27 H 1.09001 * 109.50813 * 187.84301 * 16 15 14 28 28 H 1.09001 * 109.50617 * 67.75900 * 16 15 14 29 29 H 1.08992 * 109.50127 * 55.01409 * 18 17 16 30 30 H 1.08997 * 109.50393 * 175.09550 * 18 17 16 31 31 H 1.09001 * 109.73904 * 11.91751 * 19 14 13 32 32 H 1.08997 * 109.73602 * 251.21547 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7119 12 7 2.0184 -0.6907 1.1962 13 7 2.2519 0.0299 2.3747 14 6 2.5794 -0.5868 3.4476 15 6 2.5840 -2.1006 3.5123 16 6 1.8323 -2.5254 4.7798 17 8 2.3780 -1.8361 5.9062 18 6 2.1946 -0.4192 5.8797 19 6 2.9755 0.1704 4.6988 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 0.7088 1.1613 -3.4845 24 1 2.1800 -1.6468 1.1721 25 1 3.6109 -2.4637 3.5543 26 1 2.0841 -2.5087 2.6339 27 1 1.9401 -3.6004 4.9239 28 1 0.7761 -2.2761 4.6774 29 1 1.1349 -0.1916 5.7653 30 1 2.5611 0.0127 6.8110 31 1 2.7282 1.2258 4.5842 32 1 4.0457 0.0593 4.8729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306237140.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:55 Heat of formation + Delta-G solvation = -32.423618 kcal Electronic energy + Delta-G solvation = -14116.227813 eV Core-core repulsion = 11690.675799 eV Total energy + Delta-G solvation = -2425.552014 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.23762 -38.00307 -36.06549 -33.67787 -32.29805 -31.35021 -28.42317 -27.28430 -24.76704 -23.94742 -22.26757 -20.13352 -18.70964 -17.70603 -17.08336 -16.89618 -16.04002 -15.64800 -15.59388 -15.17451 -14.60749 -14.41619 -13.90278 -13.30782 -13.23234 -12.91937 -12.72511 -12.61913 -12.41065 -12.24651 -12.14819 -11.95120 -11.53928 -11.14259 -10.71630 -10.58785 -10.50669 -8.54364 -8.19401 -6.36390 1.41125 1.42185 1.48744 1.53240 2.23421 2.48624 2.95607 3.09536 3.72841 3.95299 4.03870 4.23310 4.28813 4.43596 4.65906 4.71031 4.76503 4.84680 4.92754 4.99961 5.08109 5.10039 5.19228 5.42461 5.56149 5.78997 5.88132 6.20886 6.24373 6.43685 6.85284 7.35715 7.86638 8.86072 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.059061 B = 0.006341 C = 0.006114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.973543 B = 4414.790706 C = 4578.528252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.307 3.693 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.270 1.270 12 N -0.652 5.652 13 N -0.258 5.258 14 C 0.013 3.987 15 C -0.143 4.143 16 C 0.078 3.922 17 O -0.392 6.392 18 C 0.068 3.932 19 C -0.081 4.081 20 H 0.029 0.971 21 H 0.015 0.985 22 H 0.068 0.932 23 H 0.267 0.733 24 H 0.371 0.629 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.118 0.882 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.143 -5.068 13.575 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.203 3.797 3 H 0.016 0.984 4 C -0.586 4.586 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.391 5.391 13 N -0.065 5.065 14 C -0.182 4.182 15 C -0.184 4.184 16 C 0.000 4.000 17 O -0.310 6.310 18 C -0.009 4.009 19 C -0.121 4.121 20 H 0.048 0.952 21 H 0.034 0.966 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.210 0.790 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.136 0.864 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.146 0.854 31 H 0.104 0.896 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.904 -4.006 13.021 13.756 hybrid contribution 0.122 -1.127 -1.241 1.681 sum 2.026 -5.133 11.780 13.008 Atomic orbital electron populations 1.22026 0.99059 0.98890 0.99500 1.18067 0.90065 0.91522 0.80041 0.98433 1.21508 1.32453 1.13420 0.91263 0.92328 1.25727 0.94880 0.95640 1.01952 1.70021 1.36914 1.23733 1.24685 0.85360 0.78747 0.78197 0.78103 1.19588 1.20571 1.19466 1.48452 1.76673 1.07753 1.06215 1.73522 1.09395 1.29056 0.94556 1.25085 1.03988 0.94686 0.94451 1.21762 1.03026 0.93468 1.00119 1.22542 0.95614 0.98017 0.83816 1.87834 1.80203 1.19851 1.43121 1.22781 0.99081 0.80369 0.98700 1.21160 1.01839 0.99479 0.89616 0.95233 0.96603 0.91288 0.92376 0.79007 0.89167 0.91609 0.86378 0.93451 0.93108 0.85355 0.89560 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.99 9.29 71.98 0.67 -6.32 16 2 C 0.31 16.60 3.23 44.25 0.14 16.75 16 3 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 4 C -0.55 -30.53 8.74 25.60 0.22 -30.31 16 5 H 0.06 3.18 7.79 -2.91 -0.02 3.16 16 6 C 0.02 1.00 5.30 84.65 0.45 1.45 16 7 N -0.92 -52.60 11.32 21.45 0.24 -52.36 16 8 Si 0.97 43.05 29.54 68.60 2.03 45.07 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 N -0.65 -30.41 5.91 -172.50 -1.02 -31.43 16 13 N -0.26 -10.95 11.44 -39.95 -0.46 -11.41 16 14 C 0.01 0.42 6.61 47.05 0.31 0.73 16 15 C -0.14 -4.00 5.96 30.23 0.18 -3.82 16 16 C 0.08 1.77 6.85 72.10 0.49 2.26 16 17 O -0.39 -9.11 10.68 -148.98 -1.59 -10.70 16 18 C 0.07 1.37 6.85 72.10 0.49 1.87 16 19 C -0.08 -2.00 6.38 30.23 0.19 -1.80 16 20 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 23 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 24 H 0.37 16.11 6.35 -213.32 -1.36 14.76 16 25 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.07 2.00 5.99 -2.39 -0.01 1.98 16 27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 29 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -63.56 265.34 2.11 -61.45 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -0.25 Total: 18.57 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 3.16 Total: -19.19 kcal Atomic # 7 Polarization: -93.96 SS G_CDS: -1.23 Total: -95.20 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.59 Total: -10.70 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -63.56 2.11 -61.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306237140.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.028 kcal (2) G-P(sol) polarization free energy of solvation -63.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds